BOL: Related items

SOAP2 : Short Oligonucleotide Analysis Package 2

Poonam Mahapatra — Wed, 23 May 2018 10:09:22 -0500

SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length. SOAPaligner benefitted in time and space efficiency by a revolution in the basic data structures and algorithms used.The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Computer Science, the University of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu).

Address of the bookmark: http://soap.genomics.org.cn/soapaligner.html

MetaPred2CS

Manisha Mishra — Fri, 03 Mar 2017 05:15:07 -0600

MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component system protein-protein interactions (PPIs). The methods implemented in MetaPred2CS are 2 co-evolutionary methods: in-silico two hybrid (i2h) and mirror tree (MT) methods and 4 genomics context based methods: phylogenetic profiling (PP), gene fusion (GF), gene neighbourhood (GN) and and gene operon methods (GO).

http://metapred2cs.ibers.aber.ac.uk/

Address of the bookmark: https://github.com/martinjvickers/MetaPred2CS

Bioinformatics Faculty at BHARATHIDASAN UNIVERSITY

Sat, 26 Sep 2015 20:34:20 -0500

BHARATHIDASAN UNIVERSITY

(Reaccredited by NAAC with ‘A’ grade)

TIRUCHIRAPPALLI - 620 024

I N V I T E S

APPLICATIONS FOR FACULTY POSITIONS UNDER UGC XII PLAN CREATED POSTS ON CONTRACTUAL BASIS TILL 31.03.2017 IN THE FOLLOWING UNIVERSITY DEPARTMENTS. (Notification No. 31300 /H2/2015, Dt.: 18.09.2015)

ASSISTANT PROFESSOR

1. Bio-Informatics ONE (MBC)

2. Bio-Chemistry ONE G.T.(W)DW

Consolidated Pay of Rs.45,000/- p.m.

Qualification : As per UGC/AICTE/NCTE norms

Application along with other details including specialization can be downloaded from the University website www.bdu.ac.in

LAST DATE FOR RECEIPT OF FILLED IN APPLICATION IS 07.10.2015 BY 5.00 P.M.

More Info : www.bdu.ac.in/adv/UGC_XII_Plan_Contract_Positions.pdf

R.A Bioinformatics at JNU, Delhi

Tue, 10 May 2016 01:50:38 -0500

R.A Jobs opportunity in Jawaharlal Nehru University (JNU) on purely temporary basis

Project Title : "Structural and functional characterization of serine biosynthetic pathway enzymes from Entamoeba histolytica"

No. of Post : 01

Qualification : Ph.D in any computational biology / bioinformatics

Desirable : 1. Experience with docking, simulations and structural biology with proof of publications is preferred. 2. National Eligibility Test cleared [CSIR/UGC] candidate is preferred.

Salary : According to CSIR rules
How to apply

The application on plain paper indicating name, date of birth/age, address, essential/technical/professional qualifications. experience, list of publications should reach The Prof. S. Gourinath, Principal Investigator, [Project Director], School of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, on or before 23rd May 2016.

More at http://www.jnu.ac.in/Career/currentjobs.htm

IgBLAST: a popular NCBI package for classifying and analyzing immunoglobulin (IG) and T cell receptor (TCR) variable domain sequences

BioJoker — Thu, 23 Jan 2020 11:34:37 -0600

NCBI team released a new version of IgBLAST with four new improvements. IgBLAST is a popular NCBI package for classifying and analyzing immunoglobulin (IG) and T cell receptor (TCR) variable domain sequences. Improvements are:

1. Support for the new FWR4 annotation feature in the AIRR format, both in standard format and in the AIRR alignment format.

2. The previous “-penalty” parameter was renamed as -V_penalty to be consistent with other IgBLAST penalty options.

3. Restored constant internal BLAST search parameters for domain annotation (i.e., FWR/CDR) such that this process is not influenced by user parameters.

4. Corrected FWR/CDR annotations for certain mouse VK and rat VH germline genes.

IgBLAST 1.15.0 is available for download from the BLAST FTP area. See the the new manual on GitHub for information about setting up and running IgBLAST.

If you have any questions or concerns, please contact blast-help@ncbi.nlm.nih.gov

Research Trainees recruitment in National Agri-Food Biotechnology Institute (NABI)

Sun, 29 Nov 2015 02:47:28 -0600

Research Trainees recruitment in National Agri-Food Biotechnology Institute (NABI)

Eligibility : Pursuing final year of M.Sc./M.Tech.

Subject category for training : I. Agricultural biotechnology II. Computational biology and bioinformatics III. Food Science & Technology IV. Nutrition Science & Technology

Duration of Training : 6 months (January to June 2016)

Selection Procedure : Through screening and selection based on merit, experience, and expression of interest submitted by candidates
How to apply

The last date of application to reach NABI latest by November 30, 2015 by 5:30 PM

More at http://www.nabi.res.in/Training.aspx

M. D. University, Rohtak is looking for the post of Research Associate

Fri, 13 Nov 2015 02:56:48 -0600

M. D. University, Rohtak - Rohtak, Haryana
M. D. University, Rohtak is looking vacancies for the post of Research Associate

Project entitled: "Establish of Bioinformatics Facility for biology teaching through bioinformatics"

Name of post: Research Associate /Trainees

Number of post: 03

Educational Qualification and Experience: Candidates should have Ph D in relevant subjects with experience in handling computational biology resources and software

Selection mode: Walk in interview

How to apply?
Interested and eligible candidates may appear for a walk-in interview on 14th November 2015 at 11.00 am, in the office of Director, Centre for Bioinformatics along with CV and attested copies of all testimonials and additional qualifications.

Recruitment reference: http://www.mdurohtak.ac.in/pdf/career/adv_research_asso_dbt_bioinfo.pdf

Luigi: a Python package that helps you build complex pipelines of batch jobs.

Neel — Thu, 24 Jun 2021 05:43:31 -0500

Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more.

Run pip install luigi to install the latest stable version from PyPI. Documentation for the latest release is hosted on readthedocs.

Run pip install luigi[toml] to install Luigi with TOML-based configs support.

Address of the bookmark: https://github.com/spotify/luigi

Scientist E-II or F in Bioinformatics & Computational Biology at Rajiv Gandhi Centre for Biotechnology

Fri, 13 Nov 2015 03:10:32 -0600

Advt. No.RGCB Advt./SCI 2015/1

Rajiv Gandhi Centre for Biotechnology (RGCB) invites applications for the following three faculty scientist positions:

Scientist G in any of the following disciplines of disease biology: Cancer Research/Cardiovascular Biology/Diabetes Biology/Pathogen Biology
Scientist E-II or F in Bioinformatics & Computational Biology
Scientist E-I or E-II in Cancer Research with special emphasis on Human Papillomavirus Research

More at http://rgcb.res.in/wp-content/uploads/2015/11/APPLICATION-FORMAT-FOR-SCIENTISTS.docx

Post-doctoral position / Scientist (m/f/d) in Bioinformatics

Mon, 15 Mar 2021 11:34:23 -0500

The Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V. in Dortmund is looking for a Post-doctoral position / Scientist (m/f/d) in Bioinformatics

More at

https://www.isas.de/files/redaktion/jobs/2021/18.60.1_Postdoc_deNBI_06_21_AS.pdf

https://www.isas.de/en/news/062021-post-doctoral-position-scientist-mfd-in-bioinformatics