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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27427?offset=630</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26500/postdoc-at-iiser-tvm</guid>
  <pubDate>Fri, 26 Feb 2016 03:53:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc at IISER -TVM]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship/ Research Associateship</p>

<p>Eligibility : M Phil / Phd</p>

<p>Location : Thiruvananthapuram</p>

<p>Last Date : 30 Apr 2016</p>

<p>Hiring Process : Face to Face Interview<br />IISER -TVM </p>

<p>The Postdoctoral Fellowship/Research Associateship is a full-time, contractual position for highly qualified young scientists to carry out research at CCMS, IISER-TVM.</p>

<p>Research areas at the Centre</p>

<p>Quantum Chemistry/ Computational Fluid Dynamics/Condensed Matter Physics (Theory)/Genomics/Genetics/Gravitational Waves</p>

<p>Qualifications: PhD in Bioinformatics / Biophysics / Physics / Astrophysics / Chemistry / Mathematics / Engineering (Mechanical/Aerospace) Those who are in the final stages of their Ph.D. thesis submission are also eligible to apply. However, those candidates must have submitted the thesis at the time of the interview.</p>

<p>Experience: Applicants should have at least three peer reviewed publications and relevant experience in the research area they are applying for.</p>

<p>No. of positions: 5</p>

<p>Age limit: 35 yrs or below. A relaxation of 5 yrs will be applicable to candidates belonging to SC/ST/OBC and women candidates</p>

<p>Salary: The Fellowship carries a remuneration of INR Rs. 5,18,000 - Rs. 5,76,000 per annum (including HRA). The postdoctoral fellowship may not be held concurrently with any other national or international fellowships. It is also not transferable to any other fellowship<br />How to apply</p>

<p>Applications should reach the Head, CCMS, IISER Thiruvananthapuram,CET Campus, Engineering College PO,Thiruvananthapuram 695016 on or before April 30, 2016 by e-mail to ccms@iisertvm.ac.in by mentioning the research area name in the subject line. </p>

<p>More at http://www.iisertvm.ac.in/openings/read_opening/150.phpx</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38385/decipher-a-software-toolset-for-deciphering-and-managing-biological-sequences-efficiently-using-the-r</guid>
	<pubDate>Sun, 09 Dec 2018 19:06:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38385/decipher-a-software-toolset-for-deciphering-and-managing-biological-sequences-efficiently-using-the-r</link>
	<title><![CDATA[DECIPHER; a software toolset for deciphering and managing biological sequences efficiently using the R]]></title>
	<description><![CDATA[<p><span>DECIPHER is a software toolset that can be used for deciphering and managing biological sequences efficiently using the&nbsp;</span><a href="http://www.r-project.org/">R</a><span>&nbsp;programming language. The&nbsp;</span><a href="http://www.r-project.org/">R</a><span>&nbsp;package is distributed as platform independent source code under the&nbsp;</span><a href="http://www.gnu.org/copyleft/gpl.html">GPL version 3 license</a><span>. Some functionality of the program is accessible online through web tools.</span></p>
<p><span style="font-size: medium; text-align: justify;">&nbsp;</span></p><p>Address of the bookmark: <a href="http://www2.decipher.codes/" rel="nofollow">http://www2.decipher.codes/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26221/project-assistant-at-iiser-mohali</guid>
  <pubDate>Fri, 29 Jan 2016 11:04:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant at IISER Mohali]]></title>
  <description><![CDATA[
<p>Project Assistant Job position in Indian Institute of Science Education &amp; Research (IISER) Mohali </p>

<p>Title : In silico understanding of molecular basis of recognition, binding, and regulation of mRNA by STAR family of transcriptional regulators.</p>

<p>No. of Post : 01</p>

<p>Department : Science and Technology</p>

<p>Qualifications : M.Sc./B.Tech in computational life sciences, computational chemistry, computational natural sciences or allied areas. Working experience in MD simulations, bioinformatics, molecular modeling, and drug designing is desirable and plus</p>

<p>Emoluments : As per DST norms<br />How to apply</p>

<p>Applicants are requested to send application along with bio-data and a summary of previous projects (if any) as a PDF file with the e-mail to Dr. Monika Sharma, Email: mnsharma@iisermohali.ac.in. Last date of applications is 17:00 IST. Feb 15, 2016. Shortlisted candidates will be called for interview on Feb 22, 2016. </p>

<p>More at http://14.139.227.202/tenders/tenderinvite/index.php/iiserm-project-openings/554-applications-are-invited-to-work-as-project-assistant-in-a-dst-inspire-research-project-funded-by-department-of-science-and-technology-india</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39956/alluvial-diagram</guid>
	<pubDate>Sat, 21 Sep 2019 07:31:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39956/alluvial-diagram</link>
	<title><![CDATA[alluvial diagram]]></title>
	<description><![CDATA[<p><span style="color: #000000; font-size: 14px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff; float: none;">Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with blocks on each axis. Observations are represented with<span>&nbsp;</span></span><em style="color: #000000; font-size: 14px; font-weight: 400; text-align: start; background-color: #ffffff;">alluvia</em><span style="color: #000000; font-size: 14px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff; float: none;"><span>&nbsp;</span>(sing. &ldquo;alluvium&rdquo;) spanning across all the axes.</span></p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/alluvial/vignettes/alluvial.html" rel="nofollow">https://cran.r-project.org/web/packages/alluvial/vignettes/alluvial.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40721/efs-an-ensemble-feature-selection-tool-implemented-as-r-package-and-web-application</guid>
	<pubDate>Tue, 28 Jan 2020 05:12:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40721/efs-an-ensemble-feature-selection-tool-implemented-as-r-package-and-web-application</link>
	<title><![CDATA[EFS: an ensemble feature selection tool implemented as R-package and web-application]]></title>
	<description><![CDATA[<p><span>The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance. Currently, eight different feature selection methods have been integrated in EFS, which can be used separately or combined in an ensemble.</span></p>
<p><a href="https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0142-8">https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0142-8</a></p><p>Address of the bookmark: <a href="http://efs.heiderlab.de/" rel="nofollow">http://efs.heiderlab.de/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43254/quasr-quantification-and-annotation-of-short-reads-in-r</guid>
	<pubDate>Fri, 13 Aug 2021 07:44:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43254/quasr-quantification-and-annotation-of-short-reads-in-r</link>
	<title><![CDATA[QuasR: Quantification and annotation of short reads in R]]></title>
	<description><![CDATA[<p>The <em><a href="https://bioconductor.org/packages/3.14/QuasR">QuasR</a></em> package (short for <em>Qu</em>antify and <em>a</em>nnotate <em>s</em>hort reads in <em>R</em>) integrates the functionality of several <strong>R</strong> packages (such as <em><a href="https://bioconductor.org/packages/3.14/IRanges">IRanges</a></em> <span>(Lawrence et al. 2013)</span> and <em><a href="https://bioconductor.org/packages/3.14/Rsamtools">Rsamtools</a></em>) and external software (e.g.&nbsp;<code>bowtie</code>, through the <em><a href="https://bioconductor.org/packages/3.14/Rbowtie">Rbowtie</a></em> package, and <code>HISAT2</code>, through the <em><a href="https://bioconductor.org/packages/3.14/Rhisat2">Rhisat2</a></em> package). The package aims to cover the whole analysis workflow of typical high throughput sequencing experiments, starting from the raw sequence reads, over pre-processing and alignment, up to quantification. A single <strong>R</strong> script can contain all steps of a complete analysis, making it simple to document, reproduce or share the workflow containing all relevant details.</p><p>Address of the bookmark: <a href="https://www.bioconductor.org/packages/devel/bioc/vignettes/QuasR/inst/doc/QuasR.html" rel="nofollow">https://www.bioconductor.org/packages/devel/bioc/vignettes/QuasR/inst/doc/QuasR.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26363/flo</guid>
	<pubDate>Wed, 10 Feb 2016 10:52:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26363/flo</link>
	<title><![CDATA[flo]]></title>
	<description><![CDATA[<p>flo - same species annotations lift over pipeline</p>
<p>Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are available on the old assembly.</p>
<p>The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver).</p>
<p>&nbsp;</p>
<p>https://github.com/wurmlab/flo</p><p>Address of the bookmark: <a href="https://github.com/wurmlab/flo" rel="nofollow">https://github.com/wurmlab/flo</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44648/modern-statistics-with-r</guid>
	<pubDate>Thu, 22 Aug 2024 04:44:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44648/modern-statistics-with-r</link>
	<title><![CDATA[Modern Statistics with R]]></title>
	<description><![CDATA[<p>This is the online version of the second edition of&nbsp;<em>Modern Statistics with R</em>. It is free to use, and always will be.&nbsp;<a href="https://www.routledge.com/Modern-Statistics-with-R-From-Wrangling-and-Exploring-Data-to-Inference-and-Predictive-Modelling/Thulin/p/book/9781032512440">Printed copies</a>&nbsp;are available from CRC Press.</p>
<p><span>Live&nbsp;<a href="https://statistikakademin.se/in-english-r/">online courses on statistics with R</a></span>&nbsp;based on this book, led by the author, are offered regularly; see&nbsp;<a href="https://statistikakademin.se/in-english-r/">this page</a>&nbsp;for more information and dates.</p>
<p>The past decades have transformed the world of statistical data analysis, with new methods, new types of data, and new computational tools. The aim of&nbsp;<em>Modern Statistics with R</em>&nbsp;is to introduce you to key parts of the modern statistical toolkit. It teaches you:</p>
<ul>
<li><span>Data wrangling</span>&nbsp;- importing, formatting, reshaping, merging, and filtering data in R.</li>
<li><span>Exploratory data analysis</span>&nbsp;- using visualisations and multivariate techniques to explore datasets.</li>
<li><span>Statistical inference</span>&nbsp;- modern methods for testing hypotheses and computing confidence intervals.</li>
<li><span>Predictive modelling</span>&nbsp;- regression models and machine learning methods for prediction, classification, and forecasting.</li>
<li><span>Simulation</span>&nbsp;- using simulation techniques for sample size computations and evaluations of statistical methods.</li>
<li><span>Ethics in statistics</span>&nbsp;- ethical issues and good statistical practice.</li>
<li><span>R programming</span>&nbsp;- writing code that is fast, readable, and (hopefully!) free from bugs.</li>
</ul>
<p>The book includes plenty of examples and more than 200 exercises with worked solutions.&nbsp;<a href="http://www.modernstatisticswithr.com/data.zip">The datasets used for the examples and the exercises can be downloaded here.</a></p><p>Address of the bookmark: <a href="https://www.modernstatisticswithr.com/" rel="nofollow">https://www.modernstatisticswithr.com/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26382/project-assistant-jrf-at-north-eastern-hill-university</guid>
  <pubDate>Fri, 12 Feb 2016 09:23:01 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant/ JRF at North Eastern Hill University]]></title>
  <description><![CDATA[
<p>Project Assistant/ JRF</p>

<p>Eligibility : ME/M.Tech, Any Graduate, MSc</p>

<p>Location : Shillong</p>

<p>Last Date : 23 Feb 2016</p>

<p>Hiring Process : Face to Face Interview<br />North Eastern Hill University</p>

<p>Project Assistant/ JRF Jobs recruitment in North Eastern Hill University on temporary basis</p>

<p>Project Title : "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India"</p>

<p>Project Assistant</p>

<p>No. of Post : 01</p>

<p>Qualifications : Graduation</p>

<p>Desirable : Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>JRF</p>

<p>No. of Post : 01</p>

<p>Qualifications : M.Tech/M.Sc in Life Sciences/Botany/Biotechnology/ Bioinformatics;</p>

<p>Desirable : Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis<br />How to apply</p>

<p>The applications through email bicnehu@gmail.com or post must reach the Dr. Devendra Kumar Biswal, Co-Principal Investigator (Co-PI) within 15 days from the date of publication of this advertisement.</p>

<p>More at http://www.nehu.ac.in/Advertisements/projectVacancy.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35896/phylographer-graph-visualization-tool</guid>
	<pubDate>Wed, 07 Mar 2018 18:11:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35896/phylographer-graph-visualization-tool</link>
	<title><![CDATA[PhyloGrapher - Graph Visualization Tool]]></title>
	<description><![CDATA[<p><strong>PhyloGrapher</strong><span>&nbsp;is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;to visualize any type of relations between elements.&nbsp;</span></p>
<p><span>https://www.youtube.com/watch?v=WgufqYMHCvM</span></p><p>Address of the bookmark: <a href="http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html" rel="nofollow">http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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