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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27427?offset=950</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26587/last</guid>
	<pubDate>Wed, 09 Mar 2016 14:27:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26587/last</link>
	<title><![CDATA[LAST]]></title>
	<description><![CDATA[<p style="text-align: center;"><img src="http://last.cbrc.jp/lastwebfig.png" alt="sketch of  similar regions in sequences" style="border: 0px;"></p>
<p>LAST can:</p>
<ul>
<li>Handle <strong>big</strong> sequence data, e.g:
<ul>
<li>Compare two vertebrate genomes</li>
<li>Align billions of DNA reads to a genome</li>
</ul>
</li>
<li>Indicate the <a href="http://lastweb.cbrc.jp/about.html">reliability</a> of each aligned column.</li>
<li>Use sequence quality data <a href="http://nar.oxfordjournals.org/content/38/7/e100.abstract">properly</a>.</li>
<li>Compare DNA to proteins, with frameshifts.</li>
<li>Compare PSSMs to sequences</li>
<li>Calculate the likelihood of chance similarities between random sequences.</li>
<li>Do split and spliced alignment.</li>
<li><a href="http://last.cbrc.jp/doc/last-train.html">Train</a> alignment parameters for unusual kinds of sequence (e.g. nanopore).</li>
</ul><p>Address of the bookmark: <a href="http://last.cbrc.jp/" rel="nofollow">http://last.cbrc.jp/</a></p>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39200/omtools-a-software-package-for-visualizing-and-processing-optical-mapping-data</guid>
	<pubDate>Fri, 29 Mar 2019 01:21:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39200/omtools-a-software-package-for-visualizing-and-processing-optical-mapping-data</link>
	<title><![CDATA[OMTools: a software package for visualizing and processing optical mapping data]]></title>
	<description><![CDATA[<p><span>OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules together form an accessible and convenient pipeline for optical mapping analyses.</span></p>
<p><span><a href="https://github.com/TF-Chan-Lab/OMTools">https://github.com/TF-Chan-Lab/OMTools</a></span></p><p>Address of the bookmark: <a href="https://github.com/TF-Chan-Lab/OMTools" rel="nofollow">https://github.com/TF-Chan-Lab/OMTools</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25308/traineeship-at-biomedical-informatics-centre-pgimer-chandigarh</guid>
  <pubDate>Sun, 29 Nov 2015 03:04:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[Traineeship at Biomedical Informatics Centre  PGIMER  Chandigarh]]></title>
  <description><![CDATA[
<p>Biomedical Informatics Centre</p>

<p>PGIMER</p>

<p>Chandigarh</p>

<p>invites application for a project dissertation program for students who have completed their first year of M.Sc. in Bioinformatics.</p>

<p>This is an exciting opportunity for Master's students to train in modern methods in Bioinformatics. The duration of the training will be four to six months, starting from January 2016.</p>

<p>Education: Pursuing M.Sc. Bioinformatics</p>

<p>Essential: Post graduate applicants should have completed their first year and should be in the third semester or first half of the second year.</p>

<p>Only students who are willing to spend a minimum period of 4 months to a maximum of six months, without any break, would be eligible for the program.</p>

<p>How to Apply: Candidates interested in the above project dissertation program should apply online. Send your CV, Scanned copy of letter of recommendation from Head of Institution along with Registration form in the given format should be sent to: info@bicpgi.org</p>

<p>Please mention clearly “Project dissertation &amp; your Name” in the Subject.</p>

<p>The last date for application is December 23, 2015</p>

<p>Note: Selected candidates may please note that the program is free of cost and would not provide any financial aid for transport and stay. Name of the selected candidates would be posted on the centre website by December 31, 2015.</p>

<p>Incomplete applications will be rejected.</p>

<p>For more information visit our website: http://bic-pgi.org/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25302/ra-bioinformatics-at-jamia-hamdard</guid>
  <pubDate>Sat, 28 Nov 2015 03:37:36 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Jamia Hamdard]]></title>
  <description><![CDATA[
<p>Research Associate, Bioinformatics Facility<br />Jamia Hamdard - New Delhi, Delhi<br />Research Associate, Bioinformatics Facility, Jamia Hamdard.<br />Emoluments: Rs. 22,000 + HRA 30%<br />Qualification: PhD or equivalent or having 3 years of research, teaching and design and development experience after M. Pharm./M.VSc./M.E./M.Tech. PhD in life sciences and related areas with experience in Bioinformatics may apply. Company Info.<br />Jamia Hamdard</p>

<p>Jamia Hamdard New Delhi - 110062 Additional Information States &amp; U.T State &amp; Union Territories Delhi How To Apply Apply Details<br />Last date of application: December 5, 2015 Web/Notification URL http://www.jamiahamdard.ac.in/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42017/gromacs-a-versatile-package-to-perform-molecular-dynamics</guid>
	<pubDate>Thu, 06 Aug 2020 22:40:38 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42017/gromacs-a-versatile-package-to-perform-molecular-dynamics</link>
	<title><![CDATA[GROMACS: a versatile package to perform molecular dynamics]]></title>
	<description><![CDATA[<p><span>GROMACS is a versatile package to perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is able to work with many biochemical molecules like proteins, lipids and nucleic acids. The WeNMR GROMACS web portal combines the versatility of this molecular dynamics package with the calculation power of the eNMR grid. This will enable you to perform many simulations from the comfort of your internet browser anywhere in the world. The server is furthermore aimed to provide a user friendly and efficient MD experience by performing many preparation and optimization steps automatically.</span></p>
<p>GROMACS conda&nbsp;<a href="https://bioconda.github.io/recipes/gromacs/README.html">https://bioconda.github.io/recipes/gromacs/README.html</a>&nbsp;</p><p>Address of the bookmark: <a href="http://haddock.science.uu.nl/enmr/services/GROMACS/main.php" rel="nofollow">http://haddock.science.uu.nl/enmr/services/GROMACS/main.php</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43290/the-snakemake-wrappers-repository</guid>
	<pubDate>Thu, 19 Aug 2021 04:39:34 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43290/the-snakemake-wrappers-repository</link>
	<title><![CDATA[The Snakemake Wrappers repository]]></title>
	<description><![CDATA[<p><span>The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from&nbsp;</span><a href="https://snakemake.readthedocs.io/">Snakemake</a><span>&nbsp;rules and workflows.</span></p>
<p>More at&nbsp;https://github.com/snakemake/snakemake-wrappers</p><p>Address of the bookmark: <a href="https://snakemake-wrappers.readthedocs.io/en/stable/" rel="nofollow">https://snakemake-wrappers.readthedocs.io/en/stable/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25504/uas-dharwad-assistant-professor</guid>
  <pubDate>Fri, 04 Dec 2015 21:06:23 -0600</pubDate>
  <link></link>
  <title><![CDATA[UAS Dharwad Assistant Professor]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF AGRICULTURAL SCIENCES, DHARWAD</p>

<p>Applications are invited in the prescribed form for filling up the following posts of Teachers and Service Personnel from the candidates who are qualified as on the last date fixed for receipt of applications in the University of Agricultural Sciences, Dharwad.</p>

<p>I. ASSISTANT PROFESSOR CADRE (Scale of pay Rs.15600-39100 + AGP Rs. 6000) (UGC / ICAR pay-scales)</p>

<p>I. Re-notified posts:</p>

<p>9. Assistant Professor of Bioinformatics 1 GM-1</p>

<p>More Info : https://sites.google.com/a/uasd.in/recruitment/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41571/wego-simple-but-useful-tool-for-visualizing-comparing-and-plotting-go-gene-ontology-annotation-results</guid>
	<pubDate>Sun, 12 Apr 2020 10:02:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41571/wego-simple-but-useful-tool-for-visualizing-comparing-and-plotting-go-gene-ontology-annotation-results</link>
	<title><![CDATA[WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results]]></title>
	<description><![CDATA[<p><span>WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many researches. Therefore we have updated WEGO 2.0 in 2018. Here are some changes we&rsquo;ve made:</span><br><span>1. The limit of input file numbers was cancelled. Now the users could upload as many files as they want with one operation.</span><br><span>2. We have added the reference data of 9 species for users selection.</span><br><span>3. Besides the traditional WEGO histogram, WEGO 2.0 outputs an additional type of bar graph showing GO terms with significant gene number differences.</span></p><p>Address of the bookmark: <a href="http://wego.genomics.org.cn/" rel="nofollow">http://wego.genomics.org.cn/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40991/jtools-more-efficient-presentation-of-regression-analyses</guid>
	<pubDate>Tue, 11 Feb 2020 23:10:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40991/jtools-more-efficient-presentation-of-regression-analyses</link>
	<title><![CDATA[jtools : more efficient presentation of regression analyses]]></title>
	<description><![CDATA[<p>This package consists of a series of functions created by the author (Jacob) to automate otherwise tedious research tasks. At this juncture, the unifying theme is the more efficient presentation of regression analyses. There are a number of functions for other programming and statistical purposes as well. Support for the&nbsp;<code>survey</code>&nbsp;package&rsquo;s&nbsp;<code>svyglm</code>&nbsp;objects as well as weighted regressions is a common theme throughout.</p>
<p><strong>Notice:</strong>&nbsp;As of&nbsp;<code>jtools</code>&nbsp;version 2.0.0, all functions dealing with interactions (e.g.,&nbsp;<code>interact_plot()</code>,&nbsp;<code>sim_slopes()</code>,&nbsp;<code>johnson_neyman()</code>) have been moved to a new package, aptly named&nbsp;<a href="https://interactions.jacob-long.com/"><code>interactions</code></a>.</p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/jtools/readme/README.html" rel="nofollow">https://cran.r-project.org/web/packages/jtools/readme/README.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25770/fellowship-doctoral-research-in-biomedical-genomics-including-statistical-genomics</guid>
  <pubDate>Sun, 20 Dec 2015 06:03:43 -0600</pubDate>
  <link></link>
  <title><![CDATA[Fellowship (Doctoral Research In Biomedical Genomics, Including Statistical Genomics)]]></title>
  <description><![CDATA[
<p>Fellowship (Doctoral Research In Biomedical Genomics, Including Statistical Genomics)<br />Eligibility : MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech, Mathematics / Applied Mathematics, Stati, Zoology)<br />Location : Kolkata<br />Last Date : 31 Dec 2015<br />Hiring Process : Written-test</p>

<p>NO: 340/ESTB/ADMN/NIBMG/2015-16 <br />Doctoral Research In Biomedical Genomics, Including Statistical Genomics conduct National Institute of Biomedical Genomics (NIBMG)<br />Information For Students Interested To Pursue Doctoral Research In Biomedical Genomics, Including Statistical Genomics, At The National Institute Of Biomedical Genomics (Nibmg), Kalyan<br />Eligibility conditions for specific areas of research are :<br />Statistical Genomics : An applicant who wishes to pursue research in Statistical Genomics should hold a Master's degree (First class or equivalent) in a relevant discipline (Statistics, Mathematics, Bioinformatics, or a related discipline)<br />Biomedical Genomics : An applicant who wishes to pursue research in any area of biomedical genomics, other than statistical genomics, should hold a Master's degree (First class or equivalent) in a relevant discipline (Biochemistry, Biotechnology, Molecular Biology, Genetics, Zoology, Physiology, or a related discipline)<br />Fellowship : An applicant should have passed the NET conducted by CSIR/UGC/ICMR/DBT within the past ONE year AND should have been awarded a valid Junior Research Fellowship from CSIR, UGC, ICMR, DBT (Category-I only), DST (INSPIRE), NBHM. Preference will be given to candidates with demonstrable research training in the form of summer training or short-term courses in established research laboratories in preparation for a research career in biomedical sciences<br />How to apply<br />Online application will be accepted until 5 PM of December 31, 2015. A formal interview of the short-listed candidates will be held on January 12, 2016</p>

<p>More at http://www.nibmg.ac.in/?q=Career%20Opportunities</p>
]]></description>
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