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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27430?offset=1190</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22429/walk-ins-for-jrf-ans-srf-post-in-nirrh-mumbai</guid>
  <pubDate>Thu, 28 May 2015 19:04:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-ins for JRF ans SRF post in NIRRH, Mumbai]]></title>
  <description><![CDATA[
<p>Title of project- "EXPLORING THE HINGE AND TRANSMEMBRANE REGION OF HUMAN FSHR FOR DESIGN OF SMALL MOLECULE AND PEPTIDOMIMETIC MODULATORS"<br />Name of the Post- Junior Research Fellow<br />No. of vacancy- One<br />Stipend- Rs. 25000/ +30% HRA<br />Essential qualification- Candidate should be Post Graduate Degree in Life Sciences / Bioinformatics /Pharmacology/ Chemistry or any other relevant area of Biology or Graduate Degree in Professional Course with NET qualification or Post Graduate Degree in Professional Course.<br />Desirable- Candidate with Good knowledge of protein structures, docking, MD simulations will be preferred.<br />Age Limit- Not exceeding 28 Years<br />Duration of project- Upto May 2018</p>

<p>Title of project- "Analysis of the structures of known antimicrobial peptides using machine learning algorithms and molecular dynamics simulations".<br />Name of the Post- Senior Research Fellow<br />No. of vacancy- One<br />Stipend- Rs. 14000/ +30% HRA<br />Essential qualification- Candidate should be having M.Sc. degree in Life Sciences / Bioinformatics / Pharmacology/ Chemistry or any other relevant area of Biology and 2 years of research experience.<br />Desirable- Candidate with Good knowledge of protein structures, docking, MD simulations will be preferred.<br />Age Limit- Not exceeding 35 Years<br />Duration of project- Upto April 2016<br />How to Apply- Interested candidates can download the application form from below mentioned link- http://www.nirrh.res.in/links/BiodataForm.pdf<br />Candidate must bring the filled up application form along with all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph.</p>

<p>Ref. - http://www.nirrh.res.in/links/job_jrf-srf.htm</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41046/iseqqc-a-tool-for-expression-based-quality-control-in-rna-sequencing</guid>
	<pubDate>Sun, 16 Feb 2020 08:47:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41046/iseqqc-a-tool-for-expression-based-quality-control-in-rna-sequencing</link>
	<title><![CDATA[iSeqQC: a tool for expression-based quality control in RNA sequencing]]></title>
	<description><![CDATA[<p><span>iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering, agglomerative hierarchical clustering and correlation coefficients to provide insight into outliers.</span></p>
<p><a href="http://cancerwebpa.jefferson.edu/iSeqQC/">http://cancerwebpa.jefferson.edu/iSeqQC/</a></p>
<p><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3399-8">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3399-8</a></p><p>Address of the bookmark: <a href="https://github.com/gkumar09/iSeqQC" rel="nofollow">https://github.com/gkumar09/iSeqQC</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22286/jrf-bioinformatics-pune-university</guid>
  <pubDate>Wed, 06 May 2015 06:21:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ Pune University]]></title>
  <description><![CDATA[
<p>Pune University is inviting applications from indian citizens for recruiting following posts:</p>

<p>Vacancies:<br />Junior Research Fellow-04<br />Age Limits:<br />Candidates age should be not more than 28 years.<br />Qualification:<br />Candidates should possess M.Sc in Microbiology/ Marine microbiology/Marine Biotechnology/ Bioinformatics/Zoology or equivalent degree with minimum 60% marks.<br />Selection Process:<br />Shortlisted candidates will be called for interview.<br />How to Apply:<br />Eligible candidates may send their applications in the prescribed format along with CV in an envelope should be superscribed as the "Application for the post of JRF" to Head Department of Zoology, Savitribai Phule Pune University on or before 10-05-2015.<br />Last Date:<br />10-05-2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41571/wego-simple-but-useful-tool-for-visualizing-comparing-and-plotting-go-gene-ontology-annotation-results</guid>
	<pubDate>Sun, 12 Apr 2020 10:02:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41571/wego-simple-but-useful-tool-for-visualizing-comparing-and-plotting-go-gene-ontology-annotation-results</link>
	<title><![CDATA[WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results]]></title>
	<description><![CDATA[<p><span>WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many researches. Therefore we have updated WEGO 2.0 in 2018. Here are some changes we&rsquo;ve made:</span><br><span>1. The limit of input file numbers was cancelled. Now the users could upload as many files as they want with one operation.</span><br><span>2. We have added the reference data of 9 species for users selection.</span><br><span>3. Besides the traditional WEGO histogram, WEGO 2.0 outputs an additional type of bar graph showing GO terms with significant gene number differences.</span></p><p>Address of the bookmark: <a href="http://wego.genomics.org.cn/" rel="nofollow">http://wego.genomics.org.cn/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42139/mixtures-a-novel-tool-for-bacterial-strain-reconstruction-from-reads</guid>
	<pubDate>Fri, 21 Aug 2020 08:23:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42139/mixtures-a-novel-tool-for-bacterial-strain-reconstruction-from-reads</link>
	<title><![CDATA[mixtureS: a novel tool for bacterial strain reconstruction from reads]]></title>
	<description><![CDATA[<div>
<p>mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS reliably identified the strains, their numbers and their abundance. Compared with three tools, mixtureS showed better performance in almost all simulated datasets and the vast majority of experimental datasets.</p>
</div>
<div>
<div>Availability</div>
<p>The source code and tool mixtureS is available at&nbsp;<a href="http://www.cs.ucf.edu/~xiaoman/mixtureS/" target="_blank">http://www.cs.ucf.edu/&tilde;xiaoman/mixtureS/</a>.</p>
</div><p>Address of the bookmark: <a href="http://www.cs.ucf.edu/~xiaoman/mixtureS/" rel="nofollow">http://www.cs.ucf.edu/~xiaoman/mixtureS/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42362/magic-a-tool-for-predicting-transcription-factors-and-cofactors-driving-gene-sets-using-encode-data</guid>
	<pubDate>Thu, 26 Nov 2020 11:05:04 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42362/magic-a-tool-for-predicting-transcription-factors-and-cofactors-driving-gene-sets-using-encode-data</link>
	<title><![CDATA[MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data]]></title>
	<description><![CDATA[<p><span>The algorithm presented herein,&nbsp;</span><strong>M</strong><span>ining&nbsp;</span><strong>A</strong><span>lgorithm for&nbsp;</span><strong>G</strong><span>enet</span><strong>I</strong><span>c&nbsp;</span><strong>C</strong><span>ontrollers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without an&nbsp;</span><em>a priori</em><span>&nbsp;binary classification of genes as targets or non-targets. When compared to other TF mining resources, MAGIC displayed favourable performance in predicting TFs and cofactors that drive gene changes in 4 settings: </span></p>
<p><span>1) A cell line expressing or lacking single TF, </span></p>
<p><span>2) Breast tumors divided along PAM50 designations </span></p>
<p><span>3) Whole brain samples from WT mice or mice lacking a single TF in a particular neuronal subtype </span></p>
<p><span>4) Single cell RNAseq analysis of neurons divided by Immediate Early Gene expression levels. </span></p>
<p><span>In summary, MAGIC is a standalone application that produces meaningful predictions of TFs and cofactors in transcriptomic experiments.</span></p>
<p><span>More at&nbsp;https://uwmadison.app.box.com/s/8j90e5h2rjrsz3bacaxnq8kor2o64vyg</span></p><p>Address of the bookmark: <a href="https://github.com/asroopra/MAGIC" rel="nofollow">https://github.com/asroopra/MAGIC</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43867/genomeqc-a-quality-assessment-tool-for-genome-assemblies-and-gene-structure-annotations</guid>
	<pubDate>Thu, 19 May 2022 04:29:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43867/genomeqc-a-quality-assessment-tool-for-genome-assemblies-and-gene-structure-annotations</link>
	<title><![CDATA[GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations]]></title>
	<description><![CDATA[<p><span>The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at&nbsp;</span><a href="https://genomeqc.maizegdb.org/">https://genomeqc.maizegdb.org/</a><span>&nbsp;under the GPL license. All source code and a containerized version of the GenomeQC pipeline is available in the GitHub repository&nbsp;</span><a href="https://github.com/HuffordLab/GenomeQC">https://github.com/HuffordLab/GenomeQC</a><span>.</span></p>
<p>https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6568-2</p><p>Address of the bookmark: <a href="https://github.com/HuffordLab/GenomeQC" rel="nofollow">https://github.com/HuffordLab/GenomeQC</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22436/ra-bioinformatics-at-national-bureau-of-animal-genetic-resources</guid>
  <pubDate>Thu, 28 May 2015 19:25:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES]]></title>
  <description><![CDATA[
<p>NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES</p>

<p>Near Basant Vihar G.T. Road Bypass P.O. Box No.129</p>

<p>Karnal - 132001 (Haryana)</p>

<p>WALK-IN-INTERVIEW</p>

<p>A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at 10:30 AM on 10.06.2015 to select One Research Associate as per details given below:</p>

<p>1. One post of Research Associate under National Fellow project entitled “Genome data mining to unravel molecular basis of thermotolerance and adaptation to diverse environments in native cattle and buffaloes”.</p>

<p>The post duration is Upto 22.05.2016 or earlier &amp; Co-terminus with the project.</p>

<p>Essential Qualifications: Master’s degree (M.Sc. / M.V.Sc.) in Biotechnology/ Animal Genetics and Breeding/ Life Sciences/ Bioinformatics with 2 Years research experience in relevant subject or Ph.D in any of the above subjects.</p>

<p>Desirable: Working Experience in molecular biology, gene expression/ microarray data analysis, SNP genotyping and sequence data analysis, mammalian cell-culture handling etc.</p>

<p>Emolument: Rs. 23,000/- per month + HRA as per admissibility</p>

<p>Research Associate: ONE</p>

<p>Duration of engagement: Upto 22.05.2016 or earlier Co-terminus with the project</p>

<p>Age Limit:  40 years for Men  45 years for women as on date of interview</p>

<p>Note: Relaxation in age will be admissible for SC/ST &amp; OBC candidates as per Govt. of India /ICAR norms</p>

<p>1. The applicants must bring with them original documents and brief of research work done during post graduation along with a set of photocopy and latest two passport size photographs. 2. A panel of selected candidates will also be made which may be utilized for filling of positions of shorter durations in future if demand arises. 3. Experience certificate in original, if any 4. The above positions are purely on temporary basis and are coterminus with the project. No TA/DA will be paid to attend the interview. 5. Any other clarifications can be had on the date of interview. 6. The Director’s decision will be final and binding on all respects.</p>

<p>Advertisement: http://210.212.93.85/RAadvertisiment.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44491/cgviewjs-is-a-circular-genome-viewing-tool</guid>
	<pubDate>Wed, 27 Mar 2024 11:16:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44491/cgviewjs-is-a-circular-genome-viewing-tool</link>
	<title><![CDATA[CGView.js is a Circular Genome Viewing tool]]></title>
	<description><![CDATA[<p>CGView.js is a&nbsp;<span>C</span>ircular&nbsp;<span>G</span>enome&nbsp;<span>View</span>ing tool for visualizing and interacting with small genomes. This software is an adaptation of the Java program&nbsp;<a href="https://paulstothard.github.io/cgview/">CGView</a>.</p>
<div>
<p>CGView.js is the genome viewer of Proksee, an expert system for genome assembly, annotation and visualization.</p>
<a href="https://proksee.ca/"></a></div>
<h1 id="features">Features</h1>
<ul>
<li>
<p>Circular and linear views of genomes</p>
</li>
<li>
<p>Capable of drawing genomes up to 10 Mbp with 1000's of features and 100's contigs</p>
</li>
<li>
<p>Smooth zooming down to the sequence level</p>
</li>
<li>
<p>Easily generate features and plots directly form the sequence (e.g. ORFs, GC-content and GC-Skew)</p>
</li>
<li>
<p>Save high resolution PNG maps up to 8000x8000px</p>
</li>
<li>
<p>Fully documented API for interacting with CGView.js maps</p>
</li>
</ul><p>Address of the bookmark: <a href="https://js.cgview.ca/" rel="nofollow">https://js.cgview.ca/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22615/jrf-position-%E2%80%93-bioinformatics-department-aravind-medical-research-foundation-amrf-madurai</guid>
  <pubDate>Fri, 12 Jun 2015 05:42:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Position – Bioinformatics Department, Aravind Medical Research Foundation (AMRF), Madurai.]]></title>
  <description><![CDATA[
<p>Applications are invited from eligible candidates for the post of Junior Research Fellow (JRF) to work at the Department of Bioinformatics, Aravind Medical Research Foundation in the following DST-SERB funded project “Clinical exome analysis pipeline for eye disease next-generation sequencing panel”.</p>

<p>Post: Junior Research Fellow (1 Position)</p>

<p>Duration: Three years</p>

<p>Qualification: First class in M.Sc/M.tech in Bioinformatics/Life Sciences/Biophysics/ Biostatistics/Bioengineering. Experience in Database development, NGS data analysis, Systems Biology and Structural Bioinformatics is desired. Preference will be given to the candidates with good computer programming skills in C, C++, R, Perl, PHP, Unix Scripting etc.</p>

<p>Selected candidates will be paid fellowship as per existing DST norms.</p>

<p>How to apply:</p>

<p>Candidates are requested to apply through one of the two modes given below<br />1. Online application – Click here to submit the online application https://docs.google.com/forms/d/16h2GLnQ-Ny-tLtlgfY3Bx3sCjeHJE30cfhJaDqW_uRs/viewform?c=0&amp;w=1<br />2. Application forms can be downloaded from here.https://docs.google.com/file/d/0BwwJEudQStxFWXdNWXl4NWtDaWc/edit<br /> Filled in application form should be sent by post to Dr. D. Bharanidharan, Department of Bioinformatics, Aravind Medical Research Foundation No 1, Anna Nagar Madurai – 625 020,</p>

<p>Candidates should apply by online or submit their applications by post on or before 15th June, 2015. Only Short listed candidates will be called for an interview. No TA/DA will be paid.</p>
]]></description>
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