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	<link>https://bioinformaticsonline.com/related/27818?offset=1290</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26221/project-assistant-at-iiser-mohali</guid>
  <pubDate>Fri, 29 Jan 2016 11:04:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant at IISER Mohali]]></title>
  <description><![CDATA[
<p>Project Assistant Job position in Indian Institute of Science Education &amp; Research (IISER) Mohali </p>

<p>Title : In silico understanding of molecular basis of recognition, binding, and regulation of mRNA by STAR family of transcriptional regulators.</p>

<p>No. of Post : 01</p>

<p>Department : Science and Technology</p>

<p>Qualifications : M.Sc./B.Tech in computational life sciences, computational chemistry, computational natural sciences or allied areas. Working experience in MD simulations, bioinformatics, molecular modeling, and drug designing is desirable and plus</p>

<p>Emoluments : As per DST norms<br />How to apply</p>

<p>Applicants are requested to send application along with bio-data and a summary of previous projects (if any) as a PDF file with the e-mail to Dr. Monika Sharma, Email: mnsharma@iisermohali.ac.in. Last date of applications is 17:00 IST. Feb 15, 2016. Shortlisted candidates will be called for interview on Feb 22, 2016. </p>

<p>More at http://14.139.227.202/tenders/tenderinvite/index.php/iiserm-project-openings/554-applications-are-invited-to-work-as-project-assistant-in-a-dst-inspire-research-project-funded-by-department-of-science-and-technology-india</p>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26336/project-fellow-bioinformatics-at-central-university-of-himachal-pradesh</guid>
  <pubDate>Tue, 09 Feb 2016 03:58:00 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Fellow Bioinformatics at Central University of Himachal Pradesh]]></title>
  <description><![CDATA[
<p>Project Fellow Bioinformatics</p>

<p>Eligibility : MSc(Bio-Chemistry, Bio-Informatics)</p>

<p>Location : Kulu</p>

<p>Last Date : 07 Mar 2016</p>

<p>Hiring Process : Face to Face Interview<br />Central University of Himachal Pradesh</p>

<p>Project Fellow Bioinformatics Job in Central University of Himachal Pradesh</p>

<p>Project (MRP) entitled: “A project proposal on targeting novel prokaryotic ubiquitin like post-translational modification pathway for therapeutic interventions against Mycobacterium tuberculosis” (No. MRP-MAJOR-MICR-2013-26840)</p>

<p>Essential Qualification: 1. Master degree in Bioinformatics/Biochemistry/Biotechnology/Environmental Science/Microbiology or any branch of Life Sciences with a minimum of 55% marks for general category (50% in case of SC/ST/PH) 2. UGC/CSIR NET, GATE qualified candidates will be given preference. Desirable Qualification: Experience in basic Bioinformatics and Molecular Biology techniques.</p>

<p>Age: Below 40 years as on 01/10/2015.</p>

<p>No.of Post: 1</p>

<p>Salary: NET/GATE qualified candidate: Rs. 16,000/-p.m. for initial two years and Rs. 18,000/- p.m. for the third year. Non-NET/GATE candidates: Rs. 14,000/-p.m. for initial two years and Rs. 16,000/-p.m. for the third year.</p>

<p>Mode of Selection: The selection shall be made on the basis of merit. The eligible candidates are required to appear for interview before the duly constituted Selection Committee for the purpose. The scheduled date, time and venue for the interview shall be intimated to the eligible candidates through phone/ e-mail.<br />How to apply</p>

<p>Last date for the receipt of applications is 07.03.2016. </p>

<p>More at http://www.cuhimachal.ac.in/news_all.aspx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26378/centurion</guid>
	<pubDate>Fri, 12 Feb 2016 04:45:41 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26378/centurion</link>
	<title><![CDATA[Centurion]]></title>
	<description><![CDATA[<p>Although centromeres are essential for life and are the subject of extensive research, centromere locations in yeast genomes are difficult to infer, and in most species they are still unknown. Recently, the chromatin conformation assay Hi-C has been re-purposed for diverse applications, including de novo genome assembly, deconvolution of metagenomic samples, and inference of centromere locations. We describe a method, Centurion, that jointly infers the locations of all centromeres in a single yeast genome by exploiting the centromeres&rsquo; tendency to cluster in 3D space. We first demonstrate the accuracy of Centurion in identifying known centromere locations from high coverage Hi-C data of budding yeast and a human malaria parasite. We then use two metagenomic samples with relatively low coverage Hi-C data to infer centromere locations for each chromosome in 14 different yeast species. For yeasts with large centromeres (e.g., S. pombe) Centurion predicts the exact centromere locations. For seven yeasts with point centromeres, Centurion predicts most of the centromeres at an average of 5~kb distance from their known locations. Finally, we predict centromere coordinates for six yeast species that currently lack centromere annotations. These results suggest that Centurion can be used for centromere identification for a large number of yeast species, even with a limited amount of Hi-C sequencing.</p>
<p>Paper:http://www.ncbi.nlm.nih.gov/pubmed/25940625</p>
<p>More at http://cbio.ensmp.fr/centurion/</p><p>Address of the bookmark: <a href="http://cbio.ensmp.fr/centurion/" rel="nofollow">http://cbio.ensmp.fr/centurion/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/26391/radka-reifova-lab</guid>
  <pubDate>Mon, 15 Feb 2016 06:00:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Radka Reifová Lab]]></title>
  <description><![CDATA[
<p>We are generally interested in the mechanisms of species origin from a molecular and ecological perspective. Particularly, we are interested in the role of sex chromosomes in speciation. Most of our research is done on birds and mammals. Currently, we focus our research on two hybridizing song birds, the Common nightingale (Luscinia megarhynchos) and the Thrush Nightingale (L. luscinia). Combining population genomic and ecological approaches we try to elucidate the genetic architecture of reproductive isolation and understand the role of interspecific competition and song convergence in the evolution of reproductive isolation between the species. </p>

<p>More at http://web.natur.cuni.cz/~radkas/index.php?page=research</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26426/genome-browser-gbrowse</guid>
	<pubDate>Fri, 19 Feb 2016 09:22:43 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26426/genome-browser-gbrowse</link>
	<title><![CDATA[Genome Browser : GBrowse]]></title>
	<description><![CDATA[<p>Generic Genome Browser Version 2: A Tutorial for Administrators</p>
<p>This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the <a href="http://gmod.org/wiki/GBrowse_2.0_HOWTO">GBrowse HOWTO</a> During most of the tutorial, we will be using the "in-memory" GBrowse database (no relational database required!) Later we will show how to set up a genome size database using the berkeleydb and MySQL adaptors.</p>
<p>More at http://elp.ucdavis.edu/tutorial/tutorial.html</p><p>Address of the bookmark: <a href="http://elp.ucdavis.edu/tutorial/tutorial.html" rel="nofollow">http://elp.ucdavis.edu/tutorial/tutorial.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26543/breakseq2</guid>
	<pubDate>Mon, 29 Feb 2016 17:45:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26543/breakseq2</link>
	<title><![CDATA[BreakSeq2]]></title>
	<description><![CDATA[<p>Ultrafast and accurate nucleotide-resolution analysis of structural variants</p>
<p>More at http://bioinform.github.io/breakseq2/</p>
<p>Download BreakSeq2</p>
<p>Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gz<br><br>For other versions, see "releases". https://github.com/bioinform/breakseq2/releases</p><p>Address of the bookmark: <a href="http://bioinform.github.io/breakseq2/" rel="nofollow">http://bioinform.github.io/breakseq2/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</guid>
	<pubDate>Mon, 07 Mar 2016 05:18:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</link>
	<title><![CDATA[Efficient genome searching with Biostrings and the BSgenome data package]]></title>
	<description><![CDATA[<p>Address of the bookmark: <a href="https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf" rel="nofollow">https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf</a></p>]]></description>
	<dc:creator>Aasha</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26712/post-doctoral-fellow-jobs-opportunity-in-srm-university</guid>
  <pubDate>Thu, 17 Mar 2016 11:20:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-Doctoral Fellow Jobs opportunity in SRM University]]></title>
  <description><![CDATA[
<p>Post-Doctoral Fellow Jobs opportunity in SRM University</p>

<p>Essential qualification : Ph.D. in Bioinformatics/Biotechnology/Genetics/Computational Biology.Understanding of genomics data and advanced knowledge of Java, and C/C++ as the programming languages and the scripting language like perl and/or Python, SQL is preferred. Experience in High Performance Computing, data architecture, database development is desirable</p>

<p>Fellowship: Rs 35,000 /-<br /> <br />How to apply</p>

<p>Candidates are requested to send their CV, and a brief summary of research experience by e-mail careers.genetics@ktr.srmuniv.ac.in  on or before 30/03/2016.</p>

<p>More at http://www.srmuniv.ac.in/jobs-applications-for-position-of-post-doctoral-fellow</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26850/wellcome-trustdbt-india-alliance-margdarshi-fellowships-2016</guid>
  <pubDate>Tue, 29 Mar 2016 17:47:39 -0500</pubDate>
  <link></link>
  <title><![CDATA[Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016]]></title>
  <description><![CDATA[
<p>The Wellcome Trust/DBT India Alliance invites application for the Margdarshi Fellowship scheme. The scheme provides a unique opportunity for visionary biomedical scientists to lead and nucleate a cutting edge research program in India in collaboration with Indian Host Institution(s). The potential candidates and the Host Institution are encouraged to make a synergistic effort towards establishing a centre of excellence that aims to improve the existing scientific breadth and utilizes the experience of the lead applicant for developing new research platforms. In addition to this, under this programme two eligible Indian institutions may also come together towards creating a new program under the leadership of a visionary scientist.</p>

<p>Eligibility</p>

<p>Interested applicants must</p>

<p>Have around 10 years of experience as independent investigator, and can be of any age or nationality<br />Have Sponsor(s) at not-for-profit Host Institution(s) in India, who is willing to extend the desired commitment and resources for program implementation<br />Provisions</p>

<p>The 5 year Fellowship provides</p>

<p>Generous personal support for the Fellow<br />Salary support for personnel, which may include Assistant Professors<br />Large quantum of funds for equipment, animals and consumables<br />Funds to attend scientific gatherings, for collaborative visits and to organize meetings<br />Overheads for the Host Institution<br />Process</p>

<p>A joint online application is invited from the Applicant and the Sponsor(s). The details of the scheme and the funding mechanism are available on the website at http://wellcomedbt.org/fellowshiptype/margdarshi-fellowships.</p>

<p>Application form can be accessed at https://fellowships.wellcomedbt.org/Login.aspx</p>

<p>Sponsored applications due by 2 May 2016</p>

<p>Send your inquiries to margdarshi@wellcomedbt.org</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26915/phd-programme-in-computational-biology</guid>
  <pubDate>Wed, 06 Apr 2016 11:47:35 -0500</pubDate>
  <link></link>
  <title><![CDATA[Ph.D. Programme in Computational Biology]]></title>
  <description><![CDATA[
<p>Ph.D. Programme in Computational Biology</p>

<p>For students interested in frontier research at the interface of biology, computation, physics and applied mathematics</p>

<p>IMSc is a leader in India in fundamental research in theoretical physics, mathematics and theoretical computer science, with several members actively pursuing research in interdisciplinary areas including computational biology.   In 2013 IMSc started a unique Ph.D. programme in this subject, training students to apply cutting-edge computational and mathematical techniques to problems in modern biology, in collaboration with leading biology departments and institutions in India and abroad.  <br />IMSc  is an autonomous national research institute under the Department of Atomic Energy, Government of India, and a constituent institution of the Homi Bhabha National Institute (HBNI), Mumbai (a deemed university).   Ph.D. degrees will be awarded by HBNI.<br />STRUCTURE OF PROGRAMME<br />Before embarking on their research, students have three semesters of coursework, which consists of seven core courses, to be carried out at IMSc; elective courses, which may be taken at IMSc or at other institutions by mutual consent; and lab rotations, at collaborating labs in other institutions. The core coursework covers essentials of modern biology, essential techniques from physics, mathematics, statistics and computer science, physics of proteins and biomolecules, biological sequence analysis and algorithms, and systems biology. Elective coursework covers various topics in greater depth. Following the coursework and a comprehensive examination, students will embark on research leading to a Ph.D. degree.<br />Selected candidates will be research fellows at IMSc and will receive fellowships, housing or house rent allowance, and contingency grants.</p>

<p>More at http://www.imsc.res.in/graduate_programme_0</p>
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