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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27839?offset=1110</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19636/google-genomics</guid>
	<pubDate>Thu, 18 Dec 2014 11:05:42 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19636/google-genomics</link>
	<title><![CDATA[Google Genomics]]></title>
	<description><![CDATA[<ul>
<li>
<p><strong>Explore genetic variation interactively.</strong> Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more.</p>
</li>
<li>
<p><strong>Process big genomic data easily.</strong> Run batch analyses like principal component analysis and Hardy-Weinberg equilibrium on as many samples as you like, in minutes or hours, with just a little code.</p>
</li>
<li>
<p><strong>Use Google's infrastructure and big data expertise.</strong> Store one genome or a million using Google Genomics and take advantage of the same infrastructure that powers Search, Maps, YouTube, Gmail and Drive.</p>
</li>
<li>
<p><strong>Support emerging global standards.</strong> Google Genomics is implementing the API defined by the Global Alliance for Genomics and Health for visualization, analysis and more. Compliant software can access Google Genomics, local servers, or any other implementation.</p>
</li>
</ul><p>Address of the bookmark: <a href="https://cloud.google.com/genomics/" rel="nofollow">https://cloud.google.com/genomics/</a></p>]]></description>
	<dc:creator>Tenzin Paul</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</guid>
	<pubDate>Tue, 17 Sep 2013 16:48:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4590/tigers-genome-sequenced</link>
	<title><![CDATA[Tigers genome sequenced]]></title>
	<description><![CDATA[<p>Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic building blocks of nucleic acids, such as DNA). They identified 20,000 genes related to various functions of the tiger.&nbsp;</p><p>The biggest and perhaps most fearsome of the world's big cats, the tiger, shares 95.6 percent of its DNA with humans' cute and furry companions, domestic cats.</p><p>The new research showed that big cats have genetic mutations that enabled them to be carnivores. The team also identified mutations that allow snow leopards to thrive at high altitudes.</p><p>Reference:</p><p><a href="http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690">http://www.nbcnews.com/science/your-cat-ferocious-tigers-share-lot-95-6-percent-their-4B11182690</a></p><p><a href="http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms">http://timesofindia.indiatimes.com/home/environment/flora-fauna/Gene-mapping-of-tiger-completed/articleshow/22671681.cms</a></p><p>Paper:</p><p><a href="http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html">http://www.nature.com/ncomms/2013/130917/ncomms3433/full/ncomms3433.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19600/studentship-at-nagaland-university</guid>
  <pubDate>Tue, 16 Dec 2014 01:35:00 -0600</pubDate>
  <link></link>
  <title><![CDATA[Studentship at Nagaland University]]></title>
  <description><![CDATA[
<p>Nagaland University<br />(A Central University Estd. By the Act of Parliament No. 35 of 1989)<br />Lumami 798 627, Nagaland<br />DBT Sponsored ‘Bioinformatics Infrastructure Facility’ Centre</p>

<p>Applications in plain paper are invited for the posts of (1) Traineeship (2 Nos.) and (2) Studentship – (2 Nos.) in the DBT funded-Bioinformatics Infrastructure Facility (BIF), Nagaland University, Lumami-798627, Nagaland. Details are given below. Interested candidates may submit the application along with self attested copies of certificates in support of the candidature to Prof. Chitta Ranjan Deb, Coordinator or Dr. L. N. Kakati, Deputy Coordinator, BIF Centre, Nagaland University, Lumami-798627, Nagaland on or before 15th January 2015.</p>

<p>The scanned application with relevant documents may be sent by email attachment to bifnulumami@gmail.com. Shortlisted candidates will be informed by email if called for interview. No TA/DA is admissible for attending the interview.</p>

<p>Traineeship (Two nos.)</p>

<p>    Post Graduate degree in any branch of Life Sciences from UGC recognized Universities</p>

<p>    Knowledge of computers and bioinformatics</p>

<p>    Rs.8000/- p.m. fixed.</p>

<p>    6 months</p>

<p>Studentship (Two nos.)</p>

<p>    Pursuing Post Graduate degree in any branch of Life Sciences from UGC recognized Universities</p>

<p>    Knowledge of computers and bioinformatics</p>

<p>    Rs.8000/- p.m. fixed.</p>

<p>    6 months</p>

<p>Terms and Conditions:</p>

<p>i) Applicants need to produce all original documents if call for interview.<br />ii) The posts are purely temporary and the appointment does not confer any entitlement or right over the job and will not be considered as formal service.<br />iii) No TA &amp; DA will be paid for appearing in the walk-in-interview.<br />iv) The stipend/salary amount is subject to the sanction of DBT, New Delhi.</p>

<p>Advertisement: http://www.nagauniv.org.in/files/BIF%20Advt.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/5817/the-first-50-plant-genomes</guid>
	<pubDate>Mon, 21 Oct 2013 11:19:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/5817/the-first-50-plant-genomes</link>
	<title><![CDATA[The First 50 Plant Genomes]]></title>
	<description><![CDATA[<p>Plant scientists can exploit available 50 plant complete genomic data for their resequencing or other related projects for understanding the genetic mechanism behind their different traits and molecular evolution. Complete information about these plant genomes given in paper link.</p>
<p><a href="https://www.crops.org/publications/tpg/articles/6/2/plantgenome2013.03.0001in">https://www.crops.org/publications/tpg/articles/6/2/plantgenome2013.03.0001in</a></p><p>Address of the bookmark: <a href="https://www.crops.org/publications/tpg/pdfs/6/2/plantgenome2013.03.0001in" rel="nofollow">https://www.crops.org/publications/tpg/pdfs/6/2/plantgenome2013.03.0001in</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19729/senior-scientist-agricultural-bio-informatics-one-post</guid>
  <pubDate>Wed, 24 Dec 2014 05:01:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[Senior Scientist (Agricultural Bio-informatics) (One post)]]></title>
  <description><![CDATA[
<p>Agricultural Scientists Recruitment Board</p>

<p>Qualifications Essential:<br />Doctoral degree in Bio-informatics/ Biotechnology/Molecular Biology and Biotechnology/Life Sciences/ Computer Sciences with specialization in Bio-informatics including relevant basic sciences with 8 years’ experience in the relevant subject as Scientist/Lecturer or in an equivalent position in the Pay Band- 3 of 15600-39100 with Grade Pay of 5400/6000/7000/8000 having made contribution to research/teachin/extension education as evidenced by published work/innovations and impact. </p>

<p>OR </p>

<p>Doctoral degree in the above subject(s) including relevant basic sciences with minimum 8 years’ experience of high quality post-doctoral research in an institution/organization as evidenced by at least 6 publications in journals with NAAS rating of 7.5 or above.</p>

<p>Desirable:<br />(i) Specialization and experience: Knowledge of software development and its application in crop bioinformatics, experience in handling ‘omies’data. <br />(ii) Teaching experience in relevant subject</p>

<p>The Secretary, Agricultural Scientists Recruitment Board, Indian Council of Agricultural Research Krishi Anusandhan Bhavan-I, Pusa New Delhi –110 012, India</p>

<p>Detailed eligibility criteria with how to apply information can be had at:<br />http://www.indiastudychannel.com/jobs/333467-Indian-Council-of-Agricultural-Research-looking-for-Assistant-Director-General.aspx</p>

<p>More at http://asrb.org.in/administrator/uploads_dir/1418978057english.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</guid>
	<pubDate>Wed, 05 Jul 2017 16:47:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</link>
	<title><![CDATA[GeneProf: analysis of high-throughput sequencing experiment]]></title>
	<description><![CDATA[<div>GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!</div>
<p>Some of GeneProf's highlights include:</p>
<ul>
<li><strong>Easy-to-use web-based interface:</strong>Access your data at any time from any computer with a working internet connection -- no need to install software! (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_introduction.jsp#section:SystemRequirements">Section 'System Requirements'</a>).</li>
<li><strong>Analysis wizards make your life easy:</strong>Step-by-step workflows make it easy to analyse high-throughput data within a minimum of hands-on time. (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#subconcept:AnalysisWizards">SubConcept 'Analysis Wizards'</a>).</li>
<li><strong>Versatile modules:</strong>Advanced users and data analysis experts benefit from GeneProf's broad range of analysis modules, which can be combined freely into sophisticated workflows (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#concept:Workflows">Concept 'Workflows'</a>).</li>
<li><strong>Integrated Analysis:</strong>Analysis of&nbsp;<em>ChIP-seq</em>&nbsp;and&nbsp;<em>RNA-seq</em>&nbsp;data in one place, plus support for the integration of other external data (e.g. from microarrays).</li>
<li><strong>Comprehensive Resource:</strong>GeneProf provides a comprehensive resource of&nbsp;<em>fully analyzed</em>&nbsp;next-generation sequencing data. Experimental results can be easily accessed and compared and the analysis procedures employed to produce the data are fully transparent (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_tutorials.jsp#tutorial:ExaminingPublicNext-GenDatausingGeneProf">Tutorial 'Examining Public Next-Gen Data..'</a>).</li>
<li><strong>Extensibility:</strong>Algorithm developers and computer programmers can develop their own modules and extend GeneProf. Existing software can be easily wrapped in the workflow framework (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:ModuleDevelopment:AddingnewFunctionalitytoGeneProf">Section 'Module Development: Adding new..'</a>) and data from GeneProf may be used externally (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:WebAPI:RetrievingDatafromGeneProf">Section 'Web API: Retrieving Data from ..'</a>).</li>
</ul>
<p>&nbsp;</p>
<p>GeneProf is academic software developed at the&nbsp;<a href="http://www.crm.ed.ac.uk/">Centre for Regenerative Medicine</a>&nbsp;/&nbsp;<a href="http://www.crm.ed.ac.uk/about/institute-stem-cell-research">Institute for Stem Cell Research</a>,&nbsp;<a href="http://www.ed.ac.uk/">University of Edinburgh</a>&nbsp;and has benefited from funding by the&nbsp;<a href="http://www.mrc.ac.uk/">Medical Research Council</a>&nbsp;and the&nbsp;<a href="http://www.eurosystemproject.eu/">EU Framework 7 Project "EuroSyStem"</a>.</p><p>Address of the bookmark: <a href="https://www.geneprof.org/GeneProf/index.jsp" rel="nofollow">https://www.geneprof.org/GeneProf/index.jsp</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19820/rstudio</guid>
	<pubDate>Sat, 27 Dec 2014 06:50:58 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19820/rstudio</link>
	<title><![CDATA[RStudio]]></title>
	<description><![CDATA[<p>RStudio IDE is a powerful and productive user interface for R. It&rsquo;s free and open source, and works great on Windows, Mac, and Linux.</p>
<p>The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr, lubridate, and others.</p>
<p>More at http://www.rstudio.com/</p>
<p>http://www.rstudio.com/products/RStudio/</p><p>Address of the bookmark: <a href="http://www.rstudio.com/" rel="nofollow">http://www.rstudio.com/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</guid>
	<pubDate>Tue, 19 Dec 2017 18:49:28 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</link>
	<title><![CDATA[1mb long DNA with Nanopore technology]]></title>
	<description><![CDATA[<p>The first continuous DNA read of more than a million bases (&gt;1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19980/seqloc-06</guid>
	<pubDate>Sun, 28 Dec 2014 12:51:29 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19980/seqloc-06</link>
	<title><![CDATA[seqloc 0.6]]></title>
	<description><![CDATA[<p>The <code>Bio.SeqLoc</code> modules in <code>seqloc</code> are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of genes in eukaryotic genomes.</p>
<p>Handle sequence locations for bioinformatics http://www.ingolia-lab.org/seqloc-tutorial.html</p><p>Address of the bookmark: <a href="http://www.stackage.org/snapshot/nightly-2014-12-28/package/seqloc-0.6" rel="nofollow">http://www.stackage.org/snapshot/nightly-2014-12-28/package/seqloc-0.6</a></p>]]></description>
	<dc:creator>Gudiya Pal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/20271/research-associate-tata-memorial-centre-advanced-centre-for-treatment-research-and-education-in-cancer-kharghar-navi-mumbai</guid>
  <pubDate>Thu, 08 Jan 2015 20:53:57 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Associate	@ TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER KHARGHAR, NAVI MUMBAI]]></title>
  <description><![CDATA[
<p>TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER KHARGHAR, NAVI MUMBAI – 410210</p>

<p>Website: www.actrec.gov.in; Ph: 27405000</p>

<p>No. ACTREC/Advt./ 66 /2014 23rd December, 2014<br />Research Associate	</p>

<p>International Cancer Genome Consortium (ICGC) - India Project (IRB Project No. 3 A/c. No. 2408)</p>

<p>Dr. Rajiv Sarin</p>

<p>Duration of the Project: One year Extendable up to Three years.</p>

<p>Consolidated Salary: Rs. 42,000/- p.m.</p>

<p>Application last date: 8th January, 2015.</p>

<p>Interview Date &amp; Time: 21st January, 2015, at 11.00 a.m.</p>

<p>Venue: Conference Room, 3rd floor, Khanolkar Shodhika, ACTREC.</p>

<p>Essential Qualifications and Experience:</p>

<p>Ph.D (any branch of Life Sciences)</p>

<p>The candidate must have at least one year experience after Ph.D., preferably in Genomics and Molecular Biology.</p>

<p>Candidates fulfilling these requirements should pre register themselves by sending their application in the prescribed format with recent CV and contact details of 2 referees by e-mail to icgc@actrec.gov.in latest 8th January, 2015 by 10.00 a.m.</p>

<p>Candidates shortlisted for the interview will be intimated by email on or before 9th January, 2015.</p>

<p>The interviews would be held on 21st January 2015 and will be only for the pre registered candidates who have been shortlisted.<br />No T.A./D.A. will be admissible for attending the interview.</p>

<p>At the time of Interview the candidate should bring original certificates along with CV with contact details of 2 referees and submit the photocopies (attested) of the certificates, with a recent passport size photograph.</p>

<p>Advertisement: www.actrec.gov.in/data%20files/2014/Walk-in-Research-Fellow-26-12-14.doc</p>
]]></description>
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