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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/27841?offset=350</link>
	<atom:link href="https://bioinformaticsonline.com/related/27841?offset=350" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21830/research-associate-bioinformatics-job-position-in-indian-agricultural-statistics-research-institute-iasri</guid>
  <pubDate>Tue, 31 Mar 2015 20:45:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics job position in Indian Agricultural Statistics Research Institute (IASRI)]]></title>
  <description><![CDATA[
<p>Research Associate Bioinformatics job position in Indian Agricultural Statistics Research Institute (IASRI)</p>

<p>Qualification : Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent. Desirable: Knowledge of Statistical and Computational Genomics/ Proteomics/ Bioinformatics OR Post-Graduation in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent with 1st Division or 60% marks or equivalent with at least two years of research experience. Desirable:Expertise on use of various software/ tool.</p>

<p>No.of Post: 2</p>

<p>Emoluments for RA: Consolidated Rs. 24000/- per month + 30% HRA for Ph.D holders and consolidated Rs. 23000/- per month + 30% HRA for Master Degree.</p>

<p>Age Limit : Age should not be more than 40 years for the post of Research associate (5 years relaxation for SC/ST/ women candidates) and 3 years for OBC candidates as on date of interview.<br />How to apply</p>

<p>Interested candidates are invited to appear for Walk-In interview at Indian Agricultural Statistics Research Institute, Library Avenue, Pusa, New Delhi -110012, along with filled in application form , all the original certificates from matriculation onwards, Ph.D. or M.Sc. certificate (as the case may be) must be produced at the time of interview in either original or provisional, Bio-Data, attested copies of all experience certificates, testimonials etc., one passport size photograph and one set of the self-attested photocopies of all the required certificates from matriculation onwards and an attested copy of recent passport size photograph pasted onto the application form. Walk-in interview will be held on 16th April, 2015 at 10:30 a.m.</p>

<p>Click Here for Job Details &amp; Application Form http://www.iasri.res.in/employment/employment.htm</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</guid>
	<pubDate>Thu, 18 May 2017 05:31:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</link>
	<title><![CDATA[maf2synteny]]></title>
	<description><![CDATA[<p>A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)</p>
<p>This tool is a standalone version of Ragout module [<a href="http://fenderglass.github./Ragout">http://fenderglass.github./Ragout</a>]</p><p>Address of the bookmark: <a href="https://github.com/fenderglass/maf2synteny" rel="nofollow">https://github.com/fenderglass/maf2synteny</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/33629/list-of-universities-offering-bachelor-master-or-phd-bioinformatics-degree-in-malaysia</guid>
	<pubDate>Thu, 22 Jun 2017 01:34:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/33629/list-of-universities-offering-bachelor-master-or-phd-bioinformatics-degree-in-malaysia</link>
	<title><![CDATA[List of universities offering Bachelor,  Master or PhD bioinformatics degree in Malaysia]]></title>
	<description><![CDATA[<p>Bioinformatics is a newly emerging interdisciplinary research area, which may be defined as the ―interface between biological and computational sciences. Most of the Bioinformatics work that is done can be described as analyzing biological data, although a growing number of projects deal with the organization of biological information. The global Bioinformatics industry has grown at a double-digit growth rate in the past and is expected to follow the same pattern in the next four years. US remains the largest market in the world, but Asia-Pacific countries, particularly India and China, are witnessing the fastest growth and are anticipated to emerge as the dominating forces in future. The Comparison of Bioinformatics Industry between Malaysia, India and other countries&nbsp;are discussed in this&nbsp;<span>http://ijbssnet.com/journals/Vol.%202_No._10;_June_2011/11.pdf paper.</span></p><p>Bioinformatics is full of opportunities. The sector is poised to open new avenues for the other related sectors also. But the biggest opportunity area in the Bioinformatics market will be in the drug discovery sector. Reduction of both the cost and time taken to discover a new drug due to fast development in the Bioinformatics tools and software zone is also making drug discovery an attractive field to venture in. Malaysian bioinformatics growth and future are discuss in this https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723929/ paper.&nbsp;Keeping all such inportance in mind, following universities in Malaysia offering bioinformatics cources:</p><p><strong>3 program(s) at AIMST University<strong>, Malaysia</strong></strong></p><p>Master of Science in Biotechnology (MSc) - Bioinformatics by Research</p><p>Master of Science (M.Sc) in Medical Microbiology (Bioinformatics) by Research</p><p>Doctor of Philosophy in Biotechnology (PhD) - Bioinformatics by Research</p><p>&nbsp;</p><p><strong>1 program(s) at INTI International University and Colleges<strong>, Malaysia</strong></strong></p><p>American Degree Transfer Program (Biosciences) in Bioinformatics</p><p>&nbsp;</p><p><strong>3 program(s) at Management and Science University (MSU)<strong>, Malaysia</strong></strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>1 program(s) at Multimedia University (MMU)<strong>, Malaysia</strong></strong></p><p>Bachelor of Science (Honours) Bioinformatics</p><p>&nbsp;</p><p><strong>1 program(s) at Universiti Industri Selangor (UNISEL) Bestari Jaya Campus<strong>, Malaysia</strong></strong></p><p>Bachelor of Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>2 program(s) at Universiti Malaysia Sabah (UMS)<strong>, Malaysia</strong></strong></p><p>PhD - Doctor of Philosophy in Bioinformatics (By Research)</p><p>MSc - Master of Science in Bioinformatics (By Research)</p><p>&nbsp;</p><p><strong>6 program(s) at Universiti Putra Malaysia (UPM)<strong>, Malaysia</strong></strong></p><p>MSc - Master of Science in Bioinformatics by Research</p><p>Master of Science in Bioinformatics and System Biology by Research</p><p>Master of Science (M.Sc) in Bioinformatics and Systems Biology (With Thesis)</p><p>PhD - Doctor of Philosophy in Bioinformatics by Research</p><p>PhD - Doctor of Philosophy in Bioinformatics and Systems Biology (With Thesis)</p><p>PhD - Doctor of Philosophy in Bioinformatics and System Biology by Research</p><p>&nbsp;</p><p><strong>1 program(s) at Universiti Selangor (UNISEL)<strong>, Malaysia</strong></strong></p><p>Bachelor of Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>3 program(s) at Universiti Teknologi Malaysia (UTM)<strong>, Malaysia</strong></strong></p><p>M.Sc - Master of Science (Bioscience) in Bioinformatics Research Group (BIRG) By Research</p><p>PhD - Doctor of Philosophy (Bioscience) in Bioinformatics Research Group (BIRG) By Research</p><p>Bachelor of Computer Science (BioInformatics)</p><p>&nbsp;</p><p><strong>4 program(s) at University of Malaya (UM)<strong>, Malaysia</strong></strong></p><p>MSc - Master of Science in Bioinformatics by Research</p><p>Master in Bioinformatics by Coursework</p><p>PhD - Doctor of Philosophy in Bioinformatics by Research</p><p>Bachelor of Science (BSc) in Bioinformatics</p><p>&nbsp;</p><p><strong>3 program(s) at Perdana University<strong>, Malaysia</strong></strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><strong>3 program(s) at&nbsp;Monash University, Malaysia</strong></p><p>Master in Bioinformatics (By Research)</p><p>PhD in Bioinformatics</p><p>Bachelor in Bioinformatics (Hons)</p><p>&nbsp;</p><p><span>The real bioinformatics scope lies if there are research labs which work in this field. One has to take account of that. If so then try to get information of those labs and visit them to get a hang of the work they pursue. For detail Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges are discussed in&nbsp;<span>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723929/ paper.</span></span></p>]]></description>
	<dc:creator>sahabuddin</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35896/phylographer-graph-visualization-tool</guid>
	<pubDate>Wed, 07 Mar 2018 18:11:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35896/phylographer-graph-visualization-tool</link>
	<title><![CDATA[PhyloGrapher - Graph Visualization Tool]]></title>
	<description><![CDATA[<p><strong>PhyloGrapher</strong><span>&nbsp;is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use&nbsp;</span><strong>PhyloGrapher</strong><span>&nbsp;to visualize any type of relations between elements.&nbsp;</span></p>
<p><span>https://www.youtube.com/watch?v=WgufqYMHCvM</span></p><p>Address of the bookmark: <a href="http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html" rel="nofollow">http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21685/uiar-short-term-trainingfinal-year-dissertation-project-in-life-sciencesbioinformaticsbiotech</guid>
  <pubDate>Mon, 16 Mar 2015 23:56:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[UIAR Short-Term Training/Final Year Dissertation Project in Life Sciences/Bioinformatics/Biotech]]></title>
  <description><![CDATA[
<p>Short-term training/Final year dissertation project</p>

<p>Candidates desirous of doing a short-term training / final year dissertation project for MSc (Life Sciences/Bioinformatics/Biotechnology or any science discipline) at UIAR Biophysics and Bioinformatics department may please drop an email atanju@iiar.res.in along with their resume.</p>

<p>Selected candidates will be further intimated. There will be a fees charged for doing the project at UIAR. The projects will be experimental or computational or involve both.</p>

<p>The training scope will be in the following areas but not limited to:</p>

<p>Bioinformatics analysis, Docking and Virtual screening, Molecular Dynamics simulation, Cloning, expression and purification of proteins, Biophysical and Biochemical characterisation of proteins, Crystallization and Structural Studies.</p>

<p>Advertisement: www.iiar.res.in/?q=node/450</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41736/synvisio-an-interactive-multiscale-synteny-visualization-tool-for-mcscanx</guid>
	<pubDate>Sun, 31 May 2020 02:01:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41736/synvisio-an-interactive-multiscale-synteny-visualization-tool-for-mcscanx</link>
	<title><![CDATA[SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.]]></title>
	<description><![CDATA[<p>SynVisio lets you explore the results of&nbsp;<a href="http://chibba.pgml.uga.edu/mcscan2/">McScanX</a>&nbsp;a popular synteny and collinearity detection toolkit and generate publication ready images.</p>
<p>SynVisio requires two files to run:</p>
<ul>
<li>The&nbsp;<strong>simplified gff file</strong>&nbsp;that was used as an input for a McScanX query.</li>
<li>The&nbsp;<strong>collinearity file</strong>&nbsp;generated as an output by McScanX for the same input query.</li>
<li>Optional&nbsp;<strong>track file</strong>&nbsp;in bedgraph format to annotate the generated charts.</li>
</ul>
<p>SynVisio offers different types of visualizations such as&nbsp;<strong>Linear Parallel plots</strong>,&nbsp;<strong>Hive plots</strong>,&nbsp;<strong>Stacked Parallel Plots&nbsp;</strong>and&nbsp;<strong>Dot plots</strong>. Users can configure the type of plots required and then choose the source and the target chromosomes that need to be mapped. Users also have option to download the generated visualizations in publication ready SVG or PNG formats.</p><p>Address of the bookmark: <a href="https://synvisio.github.io/#/" rel="nofollow">https://synvisio.github.io/#/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21894/bioinformatics-engineer-algorithm-development</guid>
  <pubDate>Wed, 01 Apr 2015 21:39:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Engineer -- Algorithm Development]]></title>
  <description><![CDATA[
<p>Centrillion Biosciences is a venture backed life sciences company located in Palo Alto, California. The company provides high quality genomic services to academic and industrial customers including top universities and research institutes. Centrillion Biosciences has an immediate opening for a full-time Bioinformatics Engineer. We're looking for an energetic, innovative, and motivated person who works well independently and on teams. The ideal candidate will have experience designing and implementing efficient algorithms to process large datasets. The role will involve collaborating with research scientists and other engineers, so strong communication skills are a must.</p>

<p>Job Description</p>

<p>• Work within a fast-paced, collaborative environment with small project teams working on a variety of tasks ranging from new product development to DNA data processing<br />• Collaborate with Centrillion research scientists in order to bridge the gap between the laboratory and the digital world<br />• Develop tools to enable research projects to cope with the enormous amounts of data produced by modern DNA sequencing experiments<br />• Build simulation algorithms to help guide and analyze research done in the lab<br />• Solve challenging engineering problems that require the development of innovative algorithms</p>

<p>Requirements</p>

<p>• Strong background in mathematics/statistics with a degree in a related field<br />• Strong analytical, coding, communication, and organizational skills<br />• Experience with algorithm development, simulations, and data analysis<br />• Proficiency in at least one modern programming language (like Python or Perl)<br />• Experience analyzing genetic and biological data sets (e.g., DNA data analysis and image analysis)<br />• Experience with machine learning and pattern recognition is preferred</p>

<p>Please submit your resume at https://www.centrillionbio.com/career/ to apply for this position.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/44637/tools-to-access-the-quality-of-your-assembled-genome</guid>
	<pubDate>Thu, 08 Aug 2024 23:31:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/44637/tools-to-access-the-quality-of-your-assembled-genome</link>
	<title><![CDATA[Tools to access the quality of your assembled genome !]]></title>
	<description><![CDATA[<ul dir="auto">
<li><a href="https://github.com/linsalrob/fasta_validator">FASTA VALIDATOR</a>&nbsp;+&nbsp;<a href="https://github.com/shenwei356/seqkit">SEQKIT RMDUP</a>: FASTA validation</li>
<li><a href="https://genometools.org/tools/gt_gff3validator.html">GENOMETOOLS GT GFF3VALIDATOR</a>: GFF3 validation</li>
<li><a href="https://github.com/PlantandFoodResearch/assemblathon2-analysis/blob/a93cba25d847434f7eadc04e63b58c567c46a56d/assemblathon_stats.pl">ASSEMBLATHON STATS</a>: Assembly statistics</li>
<li><a href="https://genometools.org/tools/gt_stat.html">GENOMETOOLS GT STAT</a>: Annotation statistics</li>
<li><a href="https://github.com/ncbi/fcs">NCBI FCS ADAPTOR</a>: Adaptor contamination pass/fail</li>
<li><a href="https://github.com/ncbi/fcs">NCBI FCS GX</a>: Foreign organism contamination pass/fail</li>
<li><a href="https://gitlab.com/ezlab/busco">BUSCO</a>: Gene-space completeness estimation</li>
<li><a href="https://github.com/tolkit/telomeric-identifier">TIDK</a>: Telomere repeat identification</li>
<li><a href="https://github.com/oushujun/LTR_retriever/blob/master/LAI">LAI</a>: Continuity of repetitive sequences</li>
<li><a href="https://github.com/DerrickWood/kraken2">KRAKEN2</a>: Taxonomy classification</li>
<li><a href="https://github.com/igvteam/juicebox.js">HIC CONTACT MAP</a>: Alignment and visualisation of HiC data</li>
<li><a href="https://github.com/mummer4/mummer">MUMMER</a>&nbsp;&rarr;&nbsp;<a href="http://circos.ca/documentation/">CIRCOS</a>&nbsp;+&nbsp;<a href="https://plotly.com/">DOTPLOT</a>&nbsp;&amp;&nbsp;<a href="https://github.com/lh3/minimap2">MINIMAP2</a>&nbsp;&rarr;&nbsp;<a href="https://github.com/schneebergerlab/plotsr">PLOTSR</a>: Synteny analysis</li>
<li><a href="https://github.com/marbl/merqury">MERQURY</a>: K-mer completeness, consensus quality and phasing assessment</li>
</ul>]]></description>
	<dc:creator>LEGE</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22283/iihr-recruitment-2015-%E2%80%93-srf-project-asst-research-associate-posts</guid>
  <pubDate>Wed, 06 May 2015 06:13:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[IIHR Recruitment 2015 – SRF, Project Asst &amp; Research Associate Posts]]></title>
  <description><![CDATA[
<p>IIHR Recruitment 2015 – SRF, Project Asst &amp; Research Associate Posts: ICAR-Indian Institute of Horticultural Research (IIHR) has published a notification for the recruitment of Senior Research Fellow, Project Assistant and Research Associate vacancies on temporary basis. Eligible candidates may apply in prescribed application format on or before 15-05-2015. Other details like age, educational qualification, selection process, how to apply are given below…</p>

<p>IIHR Vacancy Details:<br />Total No. of Posts: 14<br />Name of the Post:<br />1. Senior Research Fellow: 12 Posts<br />2. Project Assistant: 01 Post<br />3. Research Associate: 01 Post</p>

<p>Age Limit: Candidates age limit is 40 years for men &amp; 45 years for women for RA post, 35 years for men &amp; 40 years for women for SRF post, 30 years for men &amp; 35 years for women for JRF post and 21 to 40 years for Other as on closing date of receipt of applications. Age relaxation is applicable as per rules.</p>

<p>Educational Qualification: Candidates should possess M.Sc (Ag) Plant Pathology or Microbiology or Biotechnology or Biochemistry or M.Tech (Ag) or Bioinformatics for SRF Posts, 10th class with experience in workshop (welding fitting) for Project Asst Post and M.Sc (Ag) Plant Pathology or M.Sc (Ag) Biotechnology or Ph.D in Plant Pathology or Agricultural Biotechnology for RA Post.</p>

<p>Selection Process: Candidates will be selected based on their performance in interview.</p>

<p>How to Apply: Eligible candidates may send their application in the prescribed format along with attested copies of relevant certificates and should mention name of PI/ Co-PI, Item No. of the Post &amp; name of the post clearly on the application as well as on the cover to the Concerned PI/ Co-PI, Indian Institute of Horticultural Research, Hessaraghatta Lake Post, Bengaluru-560089 on or before 15-05-2015 and attend the interview along with originals, two passport size photographs on 26 &amp; 27-05-2015 from 10:00 AM Onwards.</p>

<p>Important Dates:<br />Last Date for Receipt of Applications: 15-05-2015.<br />Date &amp; Time of Interview: 26 &amp; 27-05-2015 from 10:00 AM Onwards.<br />Venue: IIHR Campus.</p>

<p>More at http://www.iihr.ernet.in/content/srf-jrf-application-format</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45299/the-gene-detectives-how-a-new-computational-tool-is-helping-us-read-the-history-written-in-our-genes</guid>
	<pubDate>Thu, 10 Sep 2026 21:23:42 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45299/the-gene-detectives-how-a-new-computational-tool-is-helping-us-read-the-history-written-in-our-genes</link>
	<title><![CDATA[The Gene Detectives: How a New Computational Tool Is Helping Us Read the History Written in Our Genes]]></title>
	<description><![CDATA[<p>Imagine opening an ancient family album with no names, dates, or captions. Some photographs are missing, others have been copied, and a few show people who look almost identical. Your challenge is to discover who is related to whom and reconstruct the family story. In evolutionary biology, scientists face a similar mystery when they study genes. Every genome contains clues about its past, but genes can be duplicated, lost, and changed over millions of years, making their history difficult to trace.</p><p>A recent study published in PLOS Computational Biology introduces REvolutionH-tl 2.0 (https://pypi.org/project/revolutionhtl/), a computational tool designed to help solve this mystery. The software analyzes protein sequences and identifies evolutionary relationships between genes. It can help researchers detect important events such as gene duplication, gene loss, and speciation, allowing them to reconstruct how genes evolved across different organisms.</p><p>What makes the tool especially interesting is its focus on both speed and interpretation. The researchers compared REvolutionH-tl 2.0 with several existing computational tools and reported that it achieved competitive accuracy while requiring less computational time in their tests. The tool also includes visualization features, helping researchers turn complicated genetic data into evolutionary stories that are easier to explore.</p><p>Genes are more than simple sequences of DNA; they are records of life&rsquo;s long history. Each surviving gene carries traces of the changes that shaped it. By bringing together computational analysis and visualization, REvolutionH-tl 2.0 acts like a detective, helping scientists uncover these hidden stories. Ultimately, tools like this can improve our understanding of how genomes evolved and how genes acquired the roles they perform today.</p><p>More at&nbsp;https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1013017</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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