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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28112?offset=1090</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27461/maftools</guid>
	<pubDate>Sat, 21 May 2016 22:40:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27461/maftools</link>
	<title><![CDATA[mafTools]]></title>
	<description><![CDATA[<p><span>Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.</span></p><p>Address of the bookmark: <a href="https://github.com/dentearl/mafTools" rel="nofollow">https://github.com/dentearl/mafTools</a></p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27473/project-assistantjunior-research-fellow-position-at-centre-of-biomedical-research-sanjay-gandhi-postgraduate-institute-of-medical-sciences-campus-lucknow</guid>
  <pubDate>Mon, 23 May 2016 01:31:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant/Junior Research Fellow Position at  Centre of Biomedical Research, Sanjay Gandhi Postgraduate Institute of Medical Sciences Campus, Lucknow.]]></title>
  <description><![CDATA[
<p>Applications are invited from eligible candidates willing to join in a Department of Science and Technology (DST) project entitled “"Mapping neural regions involved in reading process in skilled adult Deaf reader: From neuroimaging perspective (functional Magnetic Resonance Imaging (fMRI) and Diffuse Tensor Imaging (DTI.)" as a Project Assistant/Junior Research Fellow (JRF) at Centre of Biomedical Research, Sanjay Gandhi Postgraduate Institute of Medical Sciences Campus, Lucknow.</p>

<p>Essential Qualification:</p>

<p>1. Master's degree in Bioinformatics / Computer Applications / Cognitive Science /Neuroscience/ Neuropsychology or equivalent. (Advantage will be given to NET JRF qualified candidate) Additional</p>

<p>Desirable Skills:</p>

<p>1) Programming skills (e.g., C++, Matlab, Python) 2) Experience/competent in working Window and Linux based programme.</p>

<p>Please mail your CV and covering letter to dr.uttam.kumar@gmail.com.</p>

<p>To know more about lab works please visit http://uttambrainlab.co.in/lab/.</p>

<p>Last date: 15/06/16</p>

<p>Advertisement: http://cbmr.res.in/wp-content/uploads/2016/05/Advertisement-19-5-2016.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27554/jrf-bioinformatics-at-actrec-navi-mumbai</guid>
  <pubDate>Mon, 30 May 2016 03:24:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at ACTREC, Navi Mumbai]]></title>
  <description><![CDATA[
<p>No. ACTREC/Advt./23/2016<br />JRF Bioinformatics recruitment in ACTREC (On contract Basis- Primeone Workforce Pvt. Ltd.)<br />Title : “Investigating the molecular basis of CaM/c-FLIP interaction to design specific c-FLIP inhibitor for modulating its anti-apoptotic function”.<br />Qualification : Master’s degree in bioinformatics, biochemistry, biotechnology and biological sciences from a recognized university with not less than 55% aggregate marks. Experience: Prior experience in modelling, protein-protein/ligand docking, Molecular dynamics simulation required. Knowledge in database development will be preferred.   </p>

<p>Pay Scale : Rs. 32,500/- <br />How to apply<br />Candidates fulfilling these requirements should pre-register by sending their application in the prescribed format with recent CV and contact details of 2 referees by e-mail to  ‘program.office@actrec.gov.in’ latest by  17.00 hrs on 23-06-2016. The interviews would be held on 27-06-2016 and only pre-registered candidates will be eligible to appear for interview. Candidates should report between 09.30 to 10.00 a.m. in Steno Pool,  3rd floor, Khanolkar Shodhika, ACTREC, Kharghar, Navi Mumbai.</p>

<p>More at http://www.actrec.gov.in/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/27695/the-kingsley-lab</guid>
  <pubDate>Fri, 03 Jun 2016 09:55:10 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Kingsley Lab]]></title>
  <description><![CDATA[
<p>The Molecular Basis of Vertebrate Evolution. Naturally occurring species show spectacular differences in morphology, physiology, behavior, disease susceptibility, and life span. Although the genomes of many organisms have now been completely sequenced, Kingsley lab still know relatively little about the specific DNA sequence changes that underlie interesting species-specific traits. Kingsley lab laboratory is using a combination of genetic and genomic approaches to identify the detailed molecular mechanisms that control evolutionary change in vertebrates.</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27821/blobsplorer</guid>
	<pubDate>Tue, 14 Jun 2016 10:28:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27821/blobsplorer</link>
	<title><![CDATA[Blobsplorer]]></title>
	<description><![CDATA[<p>Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out those belonging to different taxa.</p>
<p>Blobsplorer is unlikely to be of use on its own as it requires contig data to be supplied in a format that involves considerable preprocessing (see below for a description). The easiest way to use Blobsplorer is as part of a workflow using scripts from <a href="https://github.com/blaxterlab/blobology">here</a>.</p><p>Address of the bookmark: <a href="http://nematodes.org/martin/blobsplorer/blobsplorer.html" rel="nofollow">http://nematodes.org/martin/blobsplorer/blobsplorer.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28164/greengenes-database</guid>
	<pubDate>Wed, 29 Jun 2016 10:03:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28164/greengenes-database</link>
	<title><![CDATA[Greengenes database]]></title>
	<description><![CDATA[<p>The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annotating novel sequences. If you are an ARB user, you can use greengenes to keep your own local database current.</p><p>Address of the bookmark: <a href="http://greengenes.lbl.gov/cgi-bin/nph-index.cgi" rel="nofollow">http://greengenes.lbl.gov/cgi-bin/nph-index.cgi</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27945/srf-project-assistant-bioinformatics-at-nirrh</guid>
  <pubDate>Sun, 19 Jun 2016 09:11:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF/ Project Assistant Bioinformatics at NIRRH]]></title>
  <description><![CDATA[
<p>SRF/ Project Assistant Bioinformatics recruitment in National Institute for Research in Reproductive Health (NIRRH)</p>

<p>Title of Project : 1. “Analysis Of The Structures Of Known Antimicrobial Peptides Using Machine Learning Algoitms And Molecular Dynamics Simulations”</p>

<p>Senior Research Fellow /1 Post</p>

<p>Qualification: First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience and CSIR/UGC/ICMR net qualified OR First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience Research experience in bioinformatics and wetlab methods. </p>

<p>Age: Not exceeding 35 Years</p>

<p>Pay Scale : Rs.18,000/- + 30% HRA Rs.14,000/- + 30% HRA </p>

<p>Project Assistant (Level-II) /1 Post</p>

<p>Qualification:  First class M.Sc. in Bioinformatics/ Biological Sciences/Computer Sciences Training experience in bioinformatics and wetlab methods .</p>

<p>Age: Not exceeding 28 Years </p>

<p>Pay Scale : Rs.8,000<br />How to apply<br />Candidates must bring along with them all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph. </p>

<p>Walk-in-Interview on 28.06.2016 between 09:00 hrs. to 12:00 hrs.</p>

<p>More at http://www.nirrh.res.in/links/job_oppotunities.htm</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28199/genome-workbench-2107</guid>
	<pubDate>Fri, 01 Jul 2016 12:09:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28199/genome-workbench-2107</link>
	<title><![CDATA[Genome Workbench 2.10.7]]></title>
	<description><![CDATA[<p>Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View.</p><p>For the full list of features, improvements and fixes, see the release notes:<a href="https://ncbi.nlm.nih.gov/tools/gbench/releasenotes" target="_blank">https://ncbi.nlm.nih.gov/tools/gbench/releasenotes</a></p><p>New Features</p><ul>
<li>BLAST Tool: added support for local custom BLAST databases</li>
<li>Graphical Sequence View: added log scaling option for graph tracks</li>
<li>Generic Table View:&nbsp;<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial17">new tutorial</a>&nbsp;added</li>
</ul><p>Bug Fixes and Improvements</p><ul>
<li>Project Tree View: Genomic Collections/Assemblies now show accessions, not just names</li>
<li>Tree View: layout updated to better accommodate nodes of different sizes</li>
<li>Table Import Dialog (MacOS): fixed issue with table visibility</li>
<li>Fixed bug where different molecules IDs in GenBank could resolve to the same sequence</li>
<li>Graphical Sequence View: fixed issue where sequence track was not shown for some sequences</li>
<li>Graphical Sequence View: fixed protein coloration methods</li>
<li>Graphical Sequence View: improved rendering of Markers to better indicate boundaries and produce higher quality PDF images</li>
<li>Create Gene Model tool: fixed scenario when gene model tool failed with local sequences</li>
<li>Search View: ORF Finder &ndash; fixed incorrect protein lengths</li>
<li>Fixed bug with not opening project file (.gbp) on a click</li>
<li>Fixed issues in GVF import</li>
<li>Fixed BLAST Search tool against NCBI databases not working</li>
<li>Fixed tblastn (protein BLAST) not working in standalone mode</li>
<li>Fixed GTF export failure</li>
</ul>]]></description>
	<dc:creator>Gudiya Pal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28425/advertisement-for-junior-research-fellowjrf-at-school-of-computational-and-integrative-sciences-jawaharlal-nehru-university</guid>
  <pubDate>Thu, 14 Jul 2016 07:24:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Advertisement for Junior Research Fellow(JRF)  at School of Computational and Integrative Sciences  Jawaharlal Nehru University]]></title>
  <description><![CDATA[
<p>Advertisement for Junior Research Fellow(JRF) - (1)</p>

<p>Applications are invited for a post in DST, India funded Project entitled: "Positive and negative impacts of macromolecular crowding agents during target site location by DNA binding proteins – origin of optimal search at physiological ionic concentration (Reference Number: ECR/2016/000188) ''. The selected candidate will be appointed purely on temporary basis, initially for two years as a JRF that may be extended to one year of SRF based on the performance.</p>

<p>Position: Junior Research Fellow (1)</p>

<p>Qualifications &amp; Experience: Candidate must have a consistently good academic record with at least 60% marks in all throughout and must have qualified NET/GATE.</p>

<p>Desirable: Basic knowledge in the field of biophysics, molecular simulations and computational biology are desirable.</p>

<p>Salary: Consolidated Rs. 25,000 per month.</p>

<p>Tenure: The project duration is for three years and the selected candidate would be appointed after an interview. Appointment will be purely on temporary basis as stipulated by the existing rules of the University.</p>

<p>Interested candidates need to send an application to the address mentioned below mentioning the name of the project and post applied for (on the cover of the envelope).</p>

<p>The applications along with CV should be mailed at the address given below. Name, address, contact number and e. mail address of two referees must be enclosed with the application. The last date for the application is July 31st 2016.</p>

<p>Dr. Arnab Bhattacharjee (Principal Investigator) <br />Assistant Professor <br />School of Computational and Integrative Sciences <br />Jawaharlal Nehru University <br />New Delhi-110067 <br />E-mail: arnab@jnu.ac.in</p>

<p>Note: 1. Only shortlisted candidates will be communicated to appear in the interview at SCIS, JNU and no other communications in this regard will be entertained.</p>

<p>2. No TA/DA will be paid for appearing in interview.</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28547/jrf-bioinformatics-at-iit-delhi</guid>
  <pubDate>Mon, 25 Jul 2016 03:26:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at IIT, Delhi]]></title>
  <description><![CDATA[
<p>No. IITD/IRD/RP03017/4254/Advertisement No.: IITD/IRD/093/2016<br />JRF Bioinformatics  job vacancies in Indian Institute of Technology Delhi (IIT Delhi)<br />Title : Elucidation of Pathologically Relevant miRNAs Responsible for Disease Progression and Resistance to Chemotherapy in Chronic Lymphocytic Leukemia (CLL) (RP03017)<br />Qualification : Candidates having first class B. Tech. / M.Sc. Degree or equivalent in Bioinformatics or Biotechnology with NET qualification. Desirable: Candidates having computer programming skills (C++, Python, Java, Web designing using Materialize frameworks, database management, offline software GUI development) with knowledge of Linux server environment and / or experience in next generation sequencing (NGS) data analysis, MD simulations will be preferred.<br />No. of Post : 01<br />Pay Scale : Rs.25,000/-<br />How to apply<br />Walk-in test / interview will be held on 04/08/2016, 03.00 p.m. at Committee Room No. 230, Block-I, Department of Biochemical Engineering &amp; Biotechnology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi-110016.</p>

<p>More at http://ird.iitd.ac.in/sites/default/files/jobs/project/IITD-IRD-093-2016.pdf</p>
]]></description>
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