Poonam Mahapatra
Bioinformatics Researcher
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Finishing !!
By Jit 2744 days agowww.cbcb.umd.edu - The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a complete genome is typically a time and resource intensive task. The advent of new sequencing technologies...Bioinformatics JRF/SRF position at University of Hyderabad
UNIVERSITY OF HYDERABAD SCHOOL OF LIFE SCIENCES Applications are invited from qualified individuals for a JRF/SRF position (sponsored by DBT/DST) at Prof. Jagan Pongubala’s laboratory, University of Hyderabad. Dr. Pongubala’s laboratory is...PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2550 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...JRF at Bose Institute, Kolkata
ADVT. No. S/BIC/01/2014-15 Bose Institute, Kolkata, invites applications from Indian Citizens for ONE (01) temporary position of Junior Research Fellow in the DBT sponsored project entitled, “Centre of Excellance (CoE) in Bioinformatics at Bose...MIX: Combining multiple assemblies from NGS data
By Rahul Nayak 2392 days agogithub.com - Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices...Research fellow (PhD candidate) in computational biology – 2 positions
At the Department of Informatics two 4-year positions as research fellow are available in the field of computational biology connected to the Computational Biology Unit. The positions are linked to the project “Integrated genomics - linking...HALC: High throughput algorithm for long read error correction
By Jit 2360 days ago Comments (1)github.com - HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig...Bioinformatician stuck in wet-lab
By Rahul Agarwal 3854 days ago Comments (1)biomickwatson.wordpress.com - This guide is aimed at pet bioinformaticians, and is meant to guide them towards better career development. 1. Make friends with local bioinformatics groups 2. Talk to your computing group 3. Obtain clear expectations 4. Rewrite your job...KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
By Jit 2333 days ago Comments (1)github.com - KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2301 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...
