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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28168?offset=410</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11656/faculty-post-at-zhejiang-university</guid>
  <pubDate>Tue, 10 Jun 2014 03:40:40 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty post at Zhejiang University]]></title>
  <description><![CDATA[
<p>Zhejiang University (ZJU) is seeking faculty candidates for its newly launched, highly competitive and well funded “Hundred Talents Program”. This search covers all colleges and departments at ZJU. Applicants, expected to be about 35 years old, should hold PhD degree, and postdoctoral experiences are preferred for applicants in most fields. Applicants should have demonstrated commitment to excellence in teaching and research at a level comparable to the academic achievement of assistant professor or associate professor in world-renowned universities. Successful candidates must work full-time and are expected to establish internationally competitive and independent research program in cutting-edge areas of the relevant field at ZJU.</p>

<p>As one of the leading research-intensive universities in China, ZJU is located in the beautiful city of Hangzhou. Successful candidates will be employed as Principal Investigators and are qualified to supervise doctoral students. ZJU will offer an internationally competitive salary and the opportunity to purchase university's apartment at a price much lower than the market price, and will provide office and laboratory spaces as well as internationally competitive research startup packages.</p>

<p>Qualified applicants are strongly encouraged to submit their applications electronically to tr@zju.edu.cn. Applicants should include the following materials in pdf format: a comprehensive CV, a statement of research and teaching plan, and a list of 3 to 5 references with detailed contact information.</p>

<p>Contact：Talents Office, ZJU</p>

<p>Tel：+86-571-88981345, +86-571-88981390</p>

<p>Fax：+86-571-88981976</p>

<p>E-mail:tr@zju.edu.cn</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/37905/phased-human-genome-assembly</guid>
	<pubDate>Mon, 08 Oct 2018 09:10:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/37905/phased-human-genome-assembly</link>
	<title><![CDATA[Phased Human Genome Assembly !]]></title>
	<description><![CDATA[<p>The new publicly available assembly (PacBio&nbsp;<a href="https://www.globenewswire.com/Tracker?data=IM2cKfZgtHafORdb9VSstujBjyW-aIzFILCtXNAkcY_yqVmxdjvG01R_FZQC7zLxs-alqquXwsW6MG98G9-g-ym8Nue2pmUZMtkIg3FIat2mYbJ-z2Ra367GlinbO13x" target="_blank" title=""><span style="text-decoration: underline;">HG00733</span></a>) has the fewest gaps of any human genome assembly, with more than half of the genome contained in gapless sequence at least 27 Mb long. The primary contig assembly is 2.89 Gb long and consists of 865 contigs that were assembled with PacBio data generated with the company&rsquo;s Sequel<span>&reg;</span>&nbsp;System. Using the&nbsp;<a href="https://www.globenewswire.com/Tracker?data=jOa6mE1Y5r8VbU1CaCgx1A0HsoVzJ7waxOiDKgvmKL6cwJq_eH4nWrGj2vLkNpxHl1-5CH4htDB4113PXT8WU60hvHQ-KKpvAwQwveEGvz3N4d0q7QHSa_X97LW8_9xEiYqfsc4d24ca-IpVYZsf7Ue-XL7fSIIZw_EHK-F96t1aaQNRcD-z1PP5qvlZbVwX" target="_blank" title=""><span style="text-decoration: underline;">FALCON-Unzip assembler</span></a>, maternal and paternal haplotypes were resolved over more than 80% of the genome. Maternal and paternal haplotype blocks were then further phased using Hi-C technology and the&nbsp;<a href="https://www.globenewswire.com/Tracker?data=jOa6mE1Y5r8VbU1CaCgx1IrQmRcKvNQm83FLTqQE6OGzutM-fEggnm4Z-nsniK0D_YmDKS_UKWE0NHtHbgvbL973Y2-9NhrWhYKizXQ4lpiTvlqPf1UZdjqVs7BDjISgDnovv8foYw8es8jQzAg5Xfq1CH36NOnWQgA_X04XSvyEEEj0q801Im6cV5M5K4eL15vb_ZgUayccOvDY_fc6lxxPAAAyA4h16-zUN44Y81KdujciCrJrv5xynMIXEjRsaIKCf6eCX_Q1j_uZlN5TD0MVr6HulTYG8lGgyL0x-eQ=" target="_blank" title=""><span style="text-decoration: underline;">FALCON-Phase method</span></a>developed in collaboration with Phase Genomics. The genome was then&nbsp;<em>de novo</em>&nbsp;scaffolded using Phase Genomics&rsquo;&nbsp;<a href="https://www.globenewswire.com/Tracker?data=4wcqEWHJpCHRJARQkC0oVkYT9htT14iVebujxcW1nMpAjmigHGQ46ObCGetRfyaZm1ADIHaV1-30B9izTAhjJ-efhFlxorUxs08kdV-9AAzQyuHJ9S7wxnRRnyegsTZd" target="_blank" title=""><span style="text-decoration: underline;">Proximo Hi-C platform</span></a>, resulting in the first chromosome-scale diploid assembly of a single individual accomplished with only two technologies. More specific details about the assembly are included on the PacBio blog.</p><p>The data are available using NCBI accession IDs: BioProject: (<a href="https://www.globenewswire.com/Tracker?data=YZtCuhY2wu5H0yIso9jtUufPXbwyHh1QOZ1jBggGpK5NtXaU_JGC9X39F3uHZ96uVmu6hW5OB2Qq805hUEW2OhSNCm630yFiEF6_nsAwYB0=" target="_blank" title=""><span style="text-decoration: underline;">PRJNA483067</span></a>), assembly: [<a href="https://www.globenewswire.com/Tracker?data=CEXZ7E56JOsRgfH4Wq3r5LVbv4QH_UIekV9idYBys9l8K7pFft824jmYWNzJqK7lQ9fMbaAtbURpm8gM7zqUbpPUrydFwrkJGGtG-NBHctjyjddiFY-p06xZPm2mHXE2" target="_blank" title=""><span style="text-decoration: underline;">RBJD00000000</span></a>] and sequence data (<a href="https://www.globenewswire.com/Tracker?data=pELP2RpqTqTRaPF9yN1N7GZYlQmTxpY0aW-B8xaNw6iyD-Lylw7X3UzMDK3YS4AIYgLtD13em2XsbzOwKhXuNbI4Ks6-LSyXl1_yVdFoB0U=" target="_blank" title=""><span style="text-decoration: underline;">SRP155659</span></a>).</p><p><span>Additional Resources</span></p><ul>
<li><a href="http://globenewswire.com/Tracker?data=zXpdadphSgIAIEWeq46yRPm5-TU0H7wTkL48ue4I9GsaHd5mJyMb9PgXgAsElREkLOCOdWdJ8uW9DHB-LyQ7xhzbd97Qis6CuAlqD0ubGgY%3D" target="_blank" title=""><span style="text-decoration: underline;">Interactive map</span></a>&nbsp;showcasing global initiatives underway to generate reference-quality human genome assemblies for diverse populations</li>
<li><a href="http://globenewswire.com/Tracker?data=EQ8NIaaa8k1Nw1MPRJYIHYrqgsDy92kU8W0siJdGQhq5IJ0dcb890PFFm-C1SrAlFf0xkxUVRxZefFK5ebhoIzmS-6OjR1G9sTxOkCOwRHCAZWmHL-e7uGSuZYcw1VsDp8AeDWO0RwcepMMB6hAoR6BBCJDiJVVZtdFlWBn2uxs%3D" target="_blank" title=""><span style="text-decoration: underline;">BioReport Podcast</span></a>&nbsp;on the value of ethnic-specific reference genomes</li>
<li><em>Nature Reviews Genetics</em>&nbsp;paper from NHGRI:&nbsp;<a href="http://globenewswire.com/Tracker?data=dffu-wPD_JX1_KVeCA6VFy-kP1tlAUbn7d85saXD59dnnJfT2BE3N_Rbm6kT4BvifA_XEs49ioa75cy4HyFi90RA_LRa2QFF6Y4mr-dcoMucljZw0K4JNDZuwWkWPE51cVC2Lqq3E3C1aZ8un6Bq3i-OO_NiVH0hh23hUw4wC84%3D" target="_blank" title=""><span style="text-decoration: underline;">Prioritizing&nbsp;diversity&nbsp;in human genomics research</span></a></li>
<li>Article in&nbsp;<em>The Journal of Precision Medicine</em>: &ldquo;<a href="http://globenewswire.com/Tracker?data=yokLqO2TCBLCdj6uZl-GYbqcGMWBerBYjSPrLMumNrWF2p5XlXq9yl5p-1b5xx3Ckfn5ZjQWkdhxLttbiNae5gccUCP-9RWPUqvTu9MuU9zgJ1c8e14lAladCuEOiVZ2oVRiqssPtLu9hgQWw4ad5EUxZemevsHE4BHC6IiFmMZ6DS6ApwZu-IonFgCFBIcjWOpitQthDASosfaqkMi9LsKgLU9F0WGVJDDOzHXpddhjfCUdEEJ7xC1p8uh9TSiCZgZV6XPlUJSe8n0C_9TtOw%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Minority Report &ndash; Ethnic Diversity and the Real Promise for Precision Medicine</span></a>&rdquo;</li>
<li>Article&nbsp;in&nbsp;<em>Bio-IT World</em>: &ldquo;<a href="http://globenewswire.com/Tracker?data=rLp1pKetctTPitNEnRjOVDZ3Cvw3FUdL6_ybXncvhjR4ksOrX3y6HUK8WtLlKHT7XZzq_woUjZ-uw20YNvsP0GZAmy5lVqETt27oBLi02wFtTH_6ubELIHtBu8vfVyKnqKp-YhosFG5K7y0RUtzmNjOAlCYPAeVXabn2a2AiSePxUXA_tSy_g79hjYm63x9dPN9oFQGYedOsyHD_ls8DKw%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Genomic Data Standards Are a Necessity</span></a>&rdquo;</li>
<li>NHGRI Project Award:&nbsp;<a href="http://globenewswire.com/Tracker?data=FbqTEeRffJ88lFryYX6MiOefXvIXFdZDAyW4nrFoYNHaJyMEYIcb7I4BIcEQmxzsKOjrlf9F8irfRJeJLOqG8KFsl-kvkhakUkg3BfYdKGnpLzKYyWbUFR0aKMeEXirHBi7oDLEUSDO45qxANwxyee-pqZXfzAIwF1Wcuaf7EIzNqRqmBUJ3TyNyI05lwAo9gDKmApMnJo5VxPj5P_6rY8lisuv1PNSAh_kJPOuhVBk%3D" target="_blank" title=""><span style="text-decoration: underline;">High Quality Human and Non-Human Primate Genome Assemblies</span></a></li>
</ul><p>More details are available on the PacBio website:</p><ul>
<li>Blog post:&nbsp;<a href="http://globenewswire.com/Tracker?data=ycj-ujgsKzVyljNa11buVmIS5tk9B733VsFZEw77nBXo-IkBvcoG16dN9vuTiY3nm2G5dJZS5Iva3w_znrEtJVDuU8cVlFpozY2ibinKwrMGxkXZVSqW8_uD8fbySRjM5Q_cjuPU22ARFSSLCc9vHJx9WHnb9Rza-qPbuWgewa0rWWStq2fQY5mLpeaQf5fcDJnyQkvDAMI3fauXdzyThg%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Data Release: Highest-Quality, Most Contiguous Individual Human Genome Assembly to Date</span></a></li>
<li>Blog post:&nbsp;<a href="http://globenewswire.com/Tracker?data=GlZZ9nyp5mDSjJPPfhVD1-dZ_W2l8s0eAUox3TQs949zyGjzO7dx9xodyvyqerdqPC-G3ZhdPEs9xNhJwflrwgHPYQL3kTofprKHBBq3O4gn9E75YUBweJw9b6tTE89sMLUQzF-vRNNDjero3mibm_uG-fSHoYBTm2ZlyEmwzZ5E9tXVd5_RjG0Xnej2E0scA0SncEItAF6Q7vdOydTV_Yr9yYT2TmKY5jtyAt6ZrNGn3McqfV9mMRkR-8dYJLqrQln9JiEkWTwUae6Blj56HyjyXKl6Dfa_CyNuy4r-EWU%3D" target="_blank" title=""><span style="text-decoration: underline;">For Reference-Grade Human Genome Assemblies, SMRT Sequencing Yields Optimal Results</span></a></li>
<li>Webinar: &nbsp;<a href="http://globenewswire.com/Tracker?data=xlnfDwMNLGZZvtexJYsUgMe-DV8HNrYx2QqjwIjfj40dToVtqrBi-gvhknHZmIe8GV_3WU3_9LIlP6GzG3ZoajnDIpwECzdMV5Vyy8Ast4Y2AiHJckf7rBhZVEU4_mV4JB0k3I9XjN2jHK8Cp5uBxyIWWqPdI6qBBdCYYhYLXUTkKpaZEV98oCfC5ET2Q7OSwUM7NieKa75yzMHwaPEYwg%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Assembling High-Quality Human Reference Genomes for Global Populations</span></a></li>
<li>FALCON-Phase&nbsp;<a href="http://globenewswire.com/Tracker?data=4Z9LDdRq3w2zYFQXEFGmz6u-Vrbfh96syfzrQMKhegLRo2PUvk7s3Xz_y1o--NuTLoCQMrHsqOEBUHIL1IPeOmhyf6Eqwdp8dv8xYo9gSVI%3D" target="_blank" title=""><span style="text-decoration: underline;">press release</span></a>&nbsp;and article&nbsp;<a href="http://globenewswire.com/Tracker?data=4Z9LDdRq3w2zYFQXEFGmz9Ts_IJqHWWrKd33x_ldJEU9mSKXpcVTTi9ioY0kVqrbrXHeCKDf4TdPnAoPJaGBK3YeZtYp-nXZacgyPESZ1XboSUZEJ9rIhDyW7bTLL5HN" target="_blank" title=""><span style="text-decoration: underline;">preprint</span></a></li>
<li>PacBio research focus webpage about&nbsp;<a href="http://globenewswire.com/Tracker?data=E-zzUkw4N01KR4muPun47qg4HX8ToDvLS4sX953hLM2wRyQZ2upkLR4WidyXTFDRLWQORpqxnkbD-CNzsOJyIfH8mJPbrLwRf04J4yjuNdem-Fulc8QIT3OCi4wx5LpqgC2ymLE0rYX5UOpbFPBgvA%3D%3D" target="_blank" title=""><span style="text-decoration: underline;">Human Population Genetics</span></a></li>
</ul><p>&nbsp;Ref:&nbsp;https://stockguru.com/2018/10/08/pacific-biosciences-releases-highest-quality-most-contiguous-individual-human-genome-assembly-to-date/</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/11592/xampp-starting-apache-fail-ubuntu</guid>
	<pubDate>Sat, 07 Jun 2014 05:52:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/11592/xampp-starting-apache-fail-ubuntu</link>
	<title><![CDATA[XAMPP: Starting Apache fail Ubuntu]]></title>
	<description><![CDATA[<p>Once you install XAMMP on linux, the most common problem you face is Apache failure. To fix the issues please use following command to first stop and then again start it.</p><p>sudo /etc/init.d/apache2 stop</p><p>sudo /etc/init.d/mysql stop</p><p>sudo /etc/init.d/proftpd stop</p><p>sudo /opt/lampp/lampp start</p><p>&nbsp;</p><p><strong>PhpMyAdmin &ldquo;Wrong permissions on configuration file, should not be world writable!&rdquo;</strong></p><p>Once the Xammp is installed, it might be possible to set up the configuration file in writable mode. Try the following steps:</p><p>Just chmod 0755 the file</p><pre>sudo chmod 0755 config.inc.php</pre>]]></description>
	<dc:creator>Ram Yash Pal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37993/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data</guid>
	<pubDate>Thu, 25 Oct 2018 06:14:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37993/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data</link>
	<title><![CDATA[Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data]]></title>
	<description><![CDATA[<p><strong>Platypus</strong><span>&nbsp;is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb. It has been extensively tested on&nbsp;</span><a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=24463883">whole-genome</a><span>,&nbsp;</span><a href="http://www.nature.com/ng/journal/v45/n1/abs/ng.2492.html">exon-capture</a><span>, and&nbsp;</span><a href="http://www.nature.com/nature/journal/v493/n7432/abs/nature11725.html">targeted capture</a><span>&nbsp;data, it has been run on very large datasets as part of the&nbsp;</span><a href="http://www.1000genomes.org/">Thousand Genomes</a><span>&nbsp;and WGS500 projects, and is being used in clinical sequencing trials in the&nbsp;</span><a href="http://www.mcgprogramme.com/">Mainstreaming Cancer Genetics</a><span>&nbsp;programme.&nbsp;</span></p>
<p><span>Tutorial&nbsp;https://github.com/andyrimmer/Platypus/blob/master/misc/README.txt</span></p><p>Address of the bookmark: <a href="http://www.well.ox.ac.uk/platypus" rel="nofollow">http://www.well.ox.ac.uk/platypus</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/38815/research-opening-ibab-bengaluru</guid>
  <pubDate>Mon, 28 Jan 2019 17:45:54 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research opening @ IBAB, Bengaluru]]></title>
  <description><![CDATA[
<p>Applications are invited for the position of Project Assistant in Bio-IT centre at IBAB, Electronic city, Bengaluru. The successful candidate will work in the next-generation sequencing (NGS) facility to perform nucleic acid isolations, quality and quantity analyses, NGS library preparations, and maintenance of sequencing related instruments and other related lab equipment. In addition, the candidate is expected to assist in various administrative matters including procurement, maintaining inventory of laboratory consumables etc. The person will have opportunity to get expertise in entire pipeline of NGS. After sufficient training, the person will act as a demonstrator in the workshops conducted by Bio-IT centre.<br />Essential Qualifications, Experiences, and Skills:</p>

<p>1. MSc. or B. Tech. or equivalent degree in Biotechnology or related life sciences discipline.<br />2. Strong aptitude for laboratory work and should be detail-oriented person.<br />3. Hands-on experience in basic molecular biology techniques.<br />4. Prior experience in working in a research laboratory or industry.<br />5. Basic IT skills that include familiarity with Microsoft Office packages.<br />6. Ability to carry out basic maintenance of general lab equipments and laboratory resources.<br />7. Ability to maintain accurate records of laboratory work.<br />8. Willingness to learn, and should be a team player.<br />Desirable Experience and Skills:<br />1. Familiarity with NGS technology.<br />2. Experience in preparation of NGS libraries.<br />3. Familiarity with Sanger sequencing technology (capillary electrophoresis based)</p>

<p>Remuneration: Remuneration will commensurate with expertise and experience.</p>

<p>How to Apply: Interested applicants fulfilling the criteria may send their detailed CV and a cover letter that explains their suitability for this position, in a single PDF, to Dr. Sreekanth Reddy at careers_bioit@ibab.ac.in. Last date for submission of application is 23rd February 2019. Please mention the position applying for in the subject line of the email.</p>

<p>About IBAB: The Bio-IT Centre at IBAB has state-of-art sequencing facility with the HiSeq 2500 and accessories such as Qubit, Covaris, Agilent 2200 TapeStation, Stratagene Mx 3000 for next generation sequencing, 3500 Dx Genetic Analyzer for capillary electrophoresis based sequencing, and HiScan for microarray imaging. The facility is fully operational and providing services to the scientific community. The Institute of Bioinformatics and Applied Biotechnology (IBAB) is a unique institute engaged in education, research and entrepreneur support programs and is based at Electronic City, Bangalore. IBAB’s mission is to catalyze the growth of the biotechnology and bioinformatics industries in India. To know more please visit: http://www.ibab.ac.in/index.php/bioit/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12594/faculty-positions-at-central-university-of-punjab</guid>
  <pubDate>Mon, 07 Jul 2014 23:33:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty Positions at Central University of Punjab]]></title>
  <description><![CDATA[
<p>Faculty Positions: Rolling/Open Advertisement Advt.No: T-10 (2013)</p>

<p>Pay Scale: Pay Band Rs.15600-39100 with AGP of Rs.6,000/-</p>

<p>Essential Qualifications for Professors, Associate Professors, and Assistant Professors: As per “UGC REGULATIONS ON MINIMUM QUALIFICATIONS FOR APPOINTMENT OF TEACHERS AND OTHER ACADEMIC STAFF IN UNIVERSITIES AND COLLEGES AND MEASURES FOR THE MAINTENANCE OF STANDARDS IN HIGHER EDUCATION 2010“ and the 2nd Amendments to the regulation issued in June 2013.</p>

<p>For details: http://www.ugc.ac.in/oldpdf/regulations/revised_finalugcregulationfinal10.pdf http://www.ugc.ac.in/pdfnews/8539300_English.pdf and University rules.</p>

<p>Procedure to apply:</p>

<p>Application forms along with API form complete in all respect along with necessary documents and application fee of Rs. 500/-. (Rs. 250/- for Scheduled Caste/Scheduled Tribe/Person with disabilities) should be sent to:</p>

<p>Registrar, Central University of Punjab, City Campus, Mansa Road, Bathinda-151001</p>

<p>For more info visit: http://www.centralunipunjab.com/Teaching/Final%20Details-t10-2013.pdf, http://www.centralunipunjab.com/Teaching/Advertisement-t10-2013.jpg</p>

<p>Last Apply Date: 31 Dec 2014</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40208/ragoo-fast-reference-guided-scaffolding-of-genome-assembly-contigs</guid>
	<pubDate>Sun, 27 Oct 2019 00:57:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40208/ragoo-fast-reference-guided-scaffolding-of-genome-assembly-contigs</link>
	<title><![CDATA[RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs]]></title>
	<description><![CDATA[<p>Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC:&nbsp;<a href="https://www.biorxiv.org/content/early/2019/01/13/519637">Fast and accurate reference-guided scaffolding of draft genomes</a>.&nbsp;<em>bioRxiv</em>&nbsp;2019.</p>
<p>RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes via minimap2 alignments to a closely related reference genome. The focus of this tool is on practicality and therefore has the following features:</p>
<ol>
<li>Good performance. On a MacBook Pro using Arabidopsis data, pseudochromosome construction takes less than a minute and the whole pipeline with SV calling takes ~2 minutes.</li>
<li>Intact ordering and orienting of contigs.</li>
<li><a href="https://github.com/malonge/RaGOO/wiki/Misassembly-Correction">Misassembly correction</a></li>
<li><a href="https://github.com/malonge/RaGOO/wiki/GFF-File-Lift-Over">GFF lift-over</a></li>
<li><a href="https://github.com/malonge/RaGOO/wiki/Calling-Structural-Variants">Structural variant calling with and integrated version of Assemblytics</a></li>
<li>Confidence scores associated with the grouping, localization, and orientation for each contig.</li>
</ol><p>Address of the bookmark: <a href="https://github.com/malonge/RaGOO" rel="nofollow">https://github.com/malonge/RaGOO</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/40770/scientist-bioinformatics-positions</guid>
  <pubDate>Thu, 30 Jan 2020 06:53:40 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist Bioinformatics Positions]]></title>
  <description><![CDATA[
<p>Bioinformatics-Multi_Omics_Integration</p>

<p>https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration</p>

<p> <br />Senior_Scientist_Bioinformatics-Transcriptomics_Analysis     </p>

<p>https://www.researchgate.net/job/939075_Senior_Scientist_Bioinformatics-Transcriptomics_Analysis-Belgium_France_Switzerland_The_Netherlands</p>

<p>Senior Scientist Bioinformatics - Network Analytics</p>

<p>https://www.researchgate.net/job/939070_Senior_Scientist_Bioinformatics-Network_Analytics_Belgium_France_Switzerland_the_Netherlands</p>

<p>Team Leader Bioinformatics Data Sciences - Mechelen, Belgium</p>

<p>https://www.researchgate.net/job/938787_Team_Leader_Bioinformatics_Data_Sciences-Mechelen_Belgium</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/42329/10-ngs-services-companies-around-the-globe</guid>
	<pubDate>Sun, 22 Nov 2020 23:56:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/42329/10-ngs-services-companies-around-the-globe</link>
	<title><![CDATA[10 NGS services companies around the globe !]]></title>
	<description><![CDATA[<p><strong>The global&nbsp;NGS services market&nbsp;is expected to reach USD 13.1 billion by 2025.&nbsp;</strong>Here are the&nbsp;<strong style="font-size: 12.8px;">top 10 NGS services companies to look for &ndash;</strong></p><p><strong>1.&nbsp;<a href="https://www.illumina.com/">Illumina, Inc. (U.S.)</a></strong></p><p>Illumina, Inc. was founded in 1998 and is headquartered at San Diego, U.S. Illumina, Inc. is one of the leading players in DNA sequencing and array-based technologies, serving customers in the research, clinical, and applied markets. The company offers products for applications in the life sciences, oncology, reproductive health, agriculture, and other emerging segments. The company serves government laboratories, genomic research centers, academics institutions as well as pharmaceutical, biotechnology, agrigenomics, commercial molecular diagnostics laboratories and consumer genomics companies. Illumina, Inc. has its geographic presence in North America, Europe, Latin America, Asia-pacific, and others.</p><p><strong>2.&nbsp;<a href="https://www.qiagen.com/us/">QIAGEN N.V. (Netherlands)</a></strong></p><p>QIAGEN N.V. was incorporated in 1986 and is headquartered at Venlo, The Netherlands. The Company is engaged in providing Sample to Insight solutions that transform biological samples into molecular insights. QIAGEN provides its workflow to customers in molecular diagnostics, assay technologies, bioservices and automation systems.&nbsp; The company&rsquo;s genome services are suitable for custom/tailored projects that allow access to genomic sequence information.&nbsp; The Company market its products in more than 100 countries across the Americas, Europe, Asia, Australia, and the Middle-East &amp;Africa through its subsidiaries and channel partners.</p><p><strong>3.&nbsp;<a href="https://www.perkinelmer.com/">PerkinElmer, Inc. (U.S.)</a></strong></p><p>PerkinElmer, Inc. was founded in 1947 and is headquartered in Waltham, Massachusetts, the U.S. PerkinElmer, Inc. offers its products &amp; services and solutions for the diagnostics, food, environmental, industrial, life sciences research and laboratory services markets. The company offer comprehensive genetic testing solutions that help to provide insight into the complex nature of rare and inherited diseases. Some of the subsidiaries of the company are Caliper Life Sciences, Improvision, Viacell Inc., ViaCord LLC, among many others. The company has its facilities located in Europe (France, Germany, and Belgium), U.S. and Asia (China, India, and Japan).</p><p><strong>4.&nbsp;<a href="https://www.eurofins.com/">Eurofins Scientific SE (Luxembourg)</a></strong></p><p>Eurofins Scientific SE was founded in 1987 and is headquartered in Luxembourg, Europe. The company offers a portfolio of over 130,000 analytical methods and more than 150 million assays performed each year to establish the safety, identity, composition, authenticity, origin, traceability, and purity of biological substances and products, as well as carry out human diagnostic services. The company has its geographic presence across 39 countries in Europe, North and South America, and Asia-Pacific.</p><p><strong>5.&nbsp;<a href="https://www.gatc-biotech.com/en/index.html">GATC Biotech AG (Germany)</a></strong></p><p>GATC Biotech AG was founded in 1990 and is headquartered in Constance, Germany. The company provides DNA and RNA sequencing and bioservices solutions to academics and industrial areas. It also provides next generation sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcriptomes, metagenomes, regulomes, pre-sequencing, NGS barcode labels, and next generation sequencing technologies; and bioservices services, including bioservices tools, pipelines and workflows, compute resources, data analysis reports, and case studies. GATC Biotech AG operates as a subsidiary of Eurofins Scientific SE. It offers its products through distributors in Italy, Japan, Portugal, Spain, and the Czech Republic.</p><p><strong>6.<a href="https://www.macrogen.com/">&nbsp;Macrogen, Inc. (South Korea)</a></strong></p><p>Macrogen, Inc. was founded in 1997 and is headquartered in Seoul, South Korea. Macrogen, Inc. provides next generation sequencing services such as whole genome, de novo, exome, targeted, transcriptomics, metagenome, and epigenome sequencing.&nbsp; The company also provides a variety of services such as oligo synthesis, database construction, genome research, and bioservices analysis system consulting services. Macrogen, Inc. provides genome research services in Korea and internationally.</p><p><strong>7.&nbsp;<a href="https://www.genotypic.co.in/">Genotypic Technology Pvt. Ltd. (India)</a></strong></p><p>Genotypic Technology Pvt. Ltd. was incorporated in 1998 and is headquartered in Bangalore, India. Genotypic Technology is the first Genomics service provider in India providing Microarray, Next Generation Sequencing (NGS), Bioservices and solutions to domestic/ international pharma, biotech companies and academia. The company provides its services for protocol optimization, probe designing, array layouts, project designing, and nucleic acid analysis to in-depth analysis. Genotypic Technology has its geographic presence in North America, Europe, Asia Pacific, Middle East &amp; Africa, and Latin America.</p><p><strong>8.&nbsp;<a href="https://www.genewiz.com/">GENEWIZ, Inc. (U.S.)</a></strong></p><p>GENEWIZ, Inc. was founded in 1999 and is headquartered in South Plainfield, New Jersey, the U.S.; The company is a leading provider of research service in the field of Next Generation Sequencing, Sanger DNA sequencing, sequencing of bacteria and phage, gene synthesis, DNA cloning, genomics including mutation analysis, single nucleotide polymorphism, and bioservices. GENEWIZ, Inc. has its geographic presence in U.S., China, Germany, France, Japan, and the U.K.</p><p><strong>9.&nbsp;<a href="https://www.genomics.cn/">Beijing Genomics Institute (China)</a></strong></p><p>Beijing Genomics Institute (BGI) is the world&rsquo;s largest genomics organization and non-profit research institution that was founded in 1999 and is headquartered in Shenzhen, China. The Company provides a wide range of commercial next generation sequencing services and genetic tests for medical institutions, agricultural and environmental applications. The Company operates all across the globe through its subsidiaries, namely, BGI China (Mainland), BGI Asia Pacific, BGI Americas (North and South America) and BGI Europe (Europe and Africa).</p><p><strong>10.&nbsp;<a href="https://www.scigenom.com/">SciGenom Labs Pvt. Ltd (India)</a></strong></p><p>SciGenom Labs Pvt. Ltd was founded in 2010 and is headquartered in Cochin, India with offices in Chennai &amp; Hyderabad in India, and San Francisco in the U.S. It is a Genomics R&amp;D services company that provides genomic sequencing and NGS services to life sciences and healthcare businesses globally as well as academic and government institutions in India.</p><p>Popular mentions &ndash; MedGenome (India), DNA Link, Inc. (South Korea), Otogenetics Corporation (U.S.), Novogene Corporation (China), LGC Limited (U.K.), CD Genomics (U.S.), SeqLL, LLC (U.S.)</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/12995/national-center-for-bioinformatics-ncb</guid>
  <pubDate>Wed, 23 Jul 2014 14:10:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[National Center for Bioinformatics (NCB)]]></title>
  <description><![CDATA[
<p>NCB is offering M.Phil and Ph.D programs in the area of Bioinformatics. The major goal of NCB is to promote quality training and research in the area of Bioinformatics. Bioinformatics originated as a cross-disciplinary field as the need for computational sections to research problem raised in biomedicine. </p>

<p>More at http://ncb.qau.edu.pk/</p>
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