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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28290?offset=370</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/27250/lawley-lab</guid>
  <pubDate>Mon, 09 May 2016 03:29:51 -0500</pubDate>
  <link></link>
  <title><![CDATA[Lawley Lab]]></title>
  <description><![CDATA[
<p>Lawley Lab are covered with a complex microbial community, known as our microbiota, which plays important roles in our physiology, immunity, metabolism and sustenance. Within the human gastrointestinal tract alone there are over 1,000 bacterial species, which amounts to approximately 10 times more cells than we harbor in our entire body and 200 times more genes than are found within our genome. Lawley Lab are really a 'supraorganism' consisting of our 'human' and 'microbial' selves.</p>

<p>More at http://www.sanger.ac.uk/science/groups/lawley-lab</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27311/release-notes-for-genome-workbench-2105</guid>
	<pubDate>Thu, 12 May 2016 13:49:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27311/release-notes-for-genome-workbench-2105</link>
	<title><![CDATA[Release Notes for Genome Workbench 2.10.5]]></title>
	<description><![CDATA[<p>New Features in latest release</p><ul>
<li>New ProSplign tool integrated with Genome Workbench (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial13">Tutorial</a>,&nbsp;<a href="https://www.youtube.com/watch?v=V9UqKJprzAg&amp;feature=youtu.be" target="_blank">Video</a>)</li>
<li>New export function for BAM/cSRA coverage graphs (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial14">Tutorial</a>)</li>
<li>New export function for alignments GFF3 format ((<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial15">Tutorial</a>))</li>
<li>Tree View: implemented new export mode based on selections (tutorial coming)</li>
<li>Tree View: added support for&nbsp;<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial3/#distance_based_circular_trees">distance based circular trees</a></li>
<li>Tree View: new rooting mode (Midpoint Root) results in more balanced trees (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial3#reroot_tree">Tutorial</a>)</li>
<li>Tree View: added possibility to right-click on an edge between two nodes and "Place Root at Middle of Branch" &ndash; to re-root at mid-branch (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/tutorial3#reroot_tree">Tutorial</a>)</li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27344/orffinder-with-smart-blast</guid>
	<pubDate>Tue, 17 May 2016 01:43:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27344/orffinder-with-smart-blast</link>
	<title><![CDATA[ORFfinder with smart BLAST]]></title>
	<description><![CDATA[<p><span>ORF Finder</span></p><p><span><a href="http://www.ncbi.nlm.nih.gov/orffinder">ORFfinder</a><span>&nbsp;is a graphical analysis tool for finding open reading frames (ORFs). We&rsquo;ve been working on a few updates, and we&rsquo;d like to find out what you think about them. Read on to find out what you can do with the new ORFfinder.</span></span></p><p>Smart BLAST (https://ncbiinsights.ncbi.nlm.nih.gov/2015/07/29/smartblast/)</p><p>Select one or a group of ORFs and BLAST several databases at once, and use the newly developed&nbsp;<a href="http://blast.ncbi.nlm.nih.gov/smartblast/">SmartBLAST</a>&nbsp;to verify protein names.&nbsp;Looking for the traditional results from&nbsp;<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi">BLAST</a>? They&rsquo;re there too.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/27455/blosum50-matrix</guid>
	<pubDate>Sat, 21 May 2016 22:12:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/27455/blosum50-matrix</link>
	<title><![CDATA[BLOSUM50 Matrix]]></title>
	<description><![CDATA[]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/27455" length="2088" type="text/x-fortran" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27479/biogps</guid>
	<pubDate>Mon, 23 May 2016 03:15:46 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27479/biogps</link>
	<title><![CDATA[BioGPS]]></title>
	<description><![CDATA[<p>A free&nbsp;<em>extensible</em>&nbsp;and&nbsp;<em>customizable</em>&nbsp;<strong>gene annotation portal</strong>, a complete resource for learning about&nbsp;<strong>gene and protein function</strong>.</p>
<p>http://biogps.org/#goto=welcome</p><p>Address of the bookmark: <a href="http://biogps.org/#goto=welcome" rel="nofollow">http://biogps.org/#goto=welcome</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27679/cluego</guid>
	<pubDate>Thu, 02 Jun 2016 09:51:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27679/cluego</link>
	<title><![CDATA[ClueGO]]></title>
	<description><![CDATA[<p>ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.</p><p>Address of the bookmark: <a href="http://www.ici.upmc.fr/cluego/" rel="nofollow">http://www.ici.upmc.fr/cluego/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27701/assistant-professor-bioinformatics-teaching-assistant-at-gujarat-university</guid>
  <pubDate>Sat, 04 Jun 2016 16:04:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor Bioinformatics / Teaching Assistant at Gujarat University]]></title>
  <description><![CDATA[
<p>Assistant Professor Bioinformatics / Teaching Assistant Jobs recruitment in Gujarat University<br />Departments :</p>

<p>M.Sc. Bioinformatics Climate Change and Impacts Management<br />M.Sc. Biotechnology and Clinical Research</p>

<p>Department of Computer Science (Rollwala Computer Centre)<br />Appointment will be on purely contract basis for 11 months on consolidated salary. Reservation as per rules<br /> <br />How to apply<br />All the candidate are here by required to fill up the application form and given to concern Department, Gujarat University, Ahmedabad (Form can be submitted personally or thorough post/courier.) Candidates are supposed to attach the self attested photocopies of their required testimonials along with application form. Last date of receipt of application is 10/06/2016.</p>

<p>More http://www.gujaratuniversity.org.in/web/NWD/NewsEvents/1700_Recruitments%20at%20Gujarat%20University.asp</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27839/lorma-a-tool-for-correcting-sequencing-errors-in-long-reads-such-those-produced-by-pacific-biosciences-sequencing-machines</guid>
	<pubDate>Wed, 15 Jun 2016 17:18:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27839/lorma-a-tool-for-correcting-sequencing-errors-in-long-reads-such-those-produced-by-pacific-biosciences-sequencing-machines</link>
	<title><![CDATA[LoRMA: a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines]]></title>
	<description><![CDATA[<p>LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines.</p>
<p>Publication:</p>
<ul>
<li>L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016.</li>
</ul>
<p>Download:</p>
<ul>
<li><a href="https://www.cs.helsinki.fi/u/lmsalmel/LoRMA/LoRMA-0.3.tar.gz">LoRMA 0.3 source files</a></li>
<li><a href="https://www.cs.helsinki.fi/u/lmsalmel/LoRMA/README.txt">README</a></li>
</ul><p>Address of the bookmark: <a href="https://www.cs.helsinki.fi/u/lmsalmel/LoRMA/" rel="nofollow">https://www.cs.helsinki.fi/u/lmsalmel/LoRMA/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28879/projects-opening-at-nbagr</guid>
  <pubDate>Wed, 24 Aug 2016 04:13:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Projects opening at NBAGR]]></title>
  <description><![CDATA[
<p>ICAR - NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES</p>

<p>Karnal -132001 (Haryana)</p>

<p>A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at 10:30 AM on 05.09.2016 for the selection of Three Research Associate &amp; One Young Professional - II as per details given below:</p>

<p>Name of the Scheme / Project: Center for Agricultural Bioinformatics. The post duration is Upto 31.032017 or earlier &amp; Co-terminus with the project.</p>

<p>Research Associate (Three posts)</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential Qualifications: PhD degree in any one of discipline/Subject Biotechnology/ Animal Genetics and Breeding/ Biochemistry/ Bioinformatics/Molecular Genetics OR Master’s degree in any one of above mentioned discipline/Subject with 4 years/5 years of Bachelor’s degree having 1st division or 60% marks or equivalent overall grade point average, with at least two years of research experience as evidenced from Fellowship/Associateship</p>

<p>Desirable Qualifications: Experience in Database/Next Generation Sequencing Data analysis for 02 RA posts or working experience in molecular biology, gene expression data analysis, SNP genotyping and sequence data analysis, functional gene characterization for 01 RA post.</p>

<p>Young Professionals II One position</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential: B. Tech or M.Tech. in Bioinformatics / Computer Science / Computer Application.</p>

<p>Desirable: Experience in Linux, MySQL, Java, C++/ PHP/ PERL R based data analysis and application development in Bioinformatics.</p>

<p>More Info : http://14.139.252.116/ADvertisementforCabinScheme.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27945/srf-project-assistant-bioinformatics-at-nirrh</guid>
  <pubDate>Sun, 19 Jun 2016 09:11:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF/ Project Assistant Bioinformatics at NIRRH]]></title>
  <description><![CDATA[
<p>SRF/ Project Assistant Bioinformatics recruitment in National Institute for Research in Reproductive Health (NIRRH)</p>

<p>Title of Project : 1. “Analysis Of The Structures Of Known Antimicrobial Peptides Using Machine Learning Algoitms And Molecular Dynamics Simulations”</p>

<p>Senior Research Fellow /1 Post</p>

<p>Qualification: First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience and CSIR/UGC/ICMR net qualified OR First class M.Sc. in Bioinformatics/ Biological Sciences from recognized university with 2 years research experience Research experience in bioinformatics and wetlab methods. </p>

<p>Age: Not exceeding 35 Years</p>

<p>Pay Scale : Rs.18,000/- + 30% HRA Rs.14,000/- + 30% HRA </p>

<p>Project Assistant (Level-II) /1 Post</p>

<p>Qualification:  First class M.Sc. in Bioinformatics/ Biological Sciences/Computer Sciences Training experience in bioinformatics and wetlab methods .</p>

<p>Age: Not exceeding 28 Years </p>

<p>Pay Scale : Rs.8,000<br />How to apply<br />Candidates must bring along with them all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph. </p>

<p>Walk-in-Interview on 28.06.2016 between 09:00 hrs. to 12:00 hrs.</p>

<p>More at http://www.nirrh.res.in/links/job_oppotunities.htm</p>
]]></description>
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