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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28303?offset=560</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26500/postdoc-at-iiser-tvm</guid>
  <pubDate>Fri, 26 Feb 2016 03:53:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc at IISER -TVM]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship/ Research Associateship</p>

<p>Eligibility : M Phil / Phd</p>

<p>Location : Thiruvananthapuram</p>

<p>Last Date : 30 Apr 2016</p>

<p>Hiring Process : Face to Face Interview<br />IISER -TVM </p>

<p>The Postdoctoral Fellowship/Research Associateship is a full-time, contractual position for highly qualified young scientists to carry out research at CCMS, IISER-TVM.</p>

<p>Research areas at the Centre</p>

<p>Quantum Chemistry/ Computational Fluid Dynamics/Condensed Matter Physics (Theory)/Genomics/Genetics/Gravitational Waves</p>

<p>Qualifications: PhD in Bioinformatics / Biophysics / Physics / Astrophysics / Chemistry / Mathematics / Engineering (Mechanical/Aerospace) Those who are in the final stages of their Ph.D. thesis submission are also eligible to apply. However, those candidates must have submitted the thesis at the time of the interview.</p>

<p>Experience: Applicants should have at least three peer reviewed publications and relevant experience in the research area they are applying for.</p>

<p>No. of positions: 5</p>

<p>Age limit: 35 yrs or below. A relaxation of 5 yrs will be applicable to candidates belonging to SC/ST/OBC and women candidates</p>

<p>Salary: The Fellowship carries a remuneration of INR Rs. 5,18,000 - Rs. 5,76,000 per annum (including HRA). The postdoctoral fellowship may not be held concurrently with any other national or international fellowships. It is also not transferable to any other fellowship<br />How to apply</p>

<p>Applications should reach the Head, CCMS, IISER Thiruvananthapuram,CET Campus, Engineering College PO,Thiruvananthapuram 695016 on or before April 30, 2016 by e-mail to ccms@iisertvm.ac.in by mentioning the research area name in the subject line. </p>

<p>More at http://www.iisertvm.ac.in/openings/read_opening/150.phpx</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26221/project-assistant-at-iiser-mohali</guid>
  <pubDate>Fri, 29 Jan 2016 11:04:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant at IISER Mohali]]></title>
  <description><![CDATA[
<p>Project Assistant Job position in Indian Institute of Science Education &amp; Research (IISER) Mohali </p>

<p>Title : In silico understanding of molecular basis of recognition, binding, and regulation of mRNA by STAR family of transcriptional regulators.</p>

<p>No. of Post : 01</p>

<p>Department : Science and Technology</p>

<p>Qualifications : M.Sc./B.Tech in computational life sciences, computational chemistry, computational natural sciences or allied areas. Working experience in MD simulations, bioinformatics, molecular modeling, and drug designing is desirable and plus</p>

<p>Emoluments : As per DST norms<br />How to apply</p>

<p>Applicants are requested to send application along with bio-data and a summary of previous projects (if any) as a PDF file with the e-mail to Dr. Monika Sharma, Email: mnsharma@iisermohali.ac.in. Last date of applications is 17:00 IST. Feb 15, 2016. Shortlisted candidates will be called for interview on Feb 22, 2016. </p>

<p>More at http://14.139.227.202/tenders/tenderinvite/index.php/iiserm-project-openings/554-applications-are-invited-to-work-as-project-assistant-in-a-dst-inspire-research-project-funded-by-department-of-science-and-technology-india</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26363/flo</guid>
	<pubDate>Wed, 10 Feb 2016 10:52:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26363/flo</link>
	<title><![CDATA[flo]]></title>
	<description><![CDATA[<p>flo - same species annotations lift over pipeline</p>
<p>Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are available on the old assembly.</p>
<p>The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver).</p>
<p>&nbsp;</p>
<p>https://github.com/wurmlab/flo</p><p>Address of the bookmark: <a href="https://github.com/wurmlab/flo" rel="nofollow">https://github.com/wurmlab/flo</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/26390/przeworski-lab</guid>
  <pubDate>Mon, 15 Feb 2016 05:41:54 -0600</pubDate>
  <link></link>
  <title><![CDATA[Przeworski lab]]></title>
  <description><![CDATA[
<p>Genetic differences among individuals reflect the combined effects of mutation, recombination, population history and natural selection. As a result, studies of natural variation can provide important insights into evolutionary and genetic mechanisms: as examples, DNA sequence conservation among distantly related species can help identify functional roles too subtle to be detected in lab settings, while analyses of population variation allow for inferences about events that are too infrequent to be measured directly. Our research employs this general approach to learn about the dynamics of adaptation and the determinants of recombination and mutation, in humans and in other species.</p>

<p>More at http://przeworski.c2b2.columbia.edu/</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26424/biotoolbox</guid>
	<pubDate>Fri, 19 Feb 2016 09:14:44 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26424/biotoolbox</link>
	<title><![CDATA[BioToolbox]]></title>
	<description><![CDATA[<p>This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file formats, and conversion between file formats. The Bio::ToolBox libraries provide a unified, abstracted interface to multiple common gene annotation formats and the collection of data from multiple data files. They rely on BioPerl SeqFeature libraries and related adaptors to access binary file formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic data relative to features, manipulating and analyzing data, and data format conversion.</p>
<p>More at http://cpansearch.perl.org/src/TJPARNELL/</p><p>Address of the bookmark: <a href="http://cpansearch.perl.org/src/TJPARNELL/" rel="nofollow">http://cpansearch.perl.org/src/TJPARNELL/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26439/ra-at-icar-indian-institute-of-oilseeds-research</guid>
  <pubDate>Mon, 22 Feb 2016 05:21:34 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA at ICAR - INDIAN INSTITUTE OF OILSEEDS RESEARCH]]></title>
  <description><![CDATA[
<p>ICAR - INDIAN INSTITUTE OF OILSEEDS RESEARCH</p>

<p>HYDERABAD-500030</p>

<p>F.No. 5-42/2016/Rectt.</p>

<p>WALK IN INTERVIEW</p>

<p>Eligible candidates are invited to attend Walk in Interview to fill up the (purely) temporary post of Junior Research Fellow (One) under Extramural Research Project entitled “Transcriptome and proteome analysis for identification of candidate genes responsible for pistillate nature in castor “ to be held on 04.03.2016 at 11.00 AM at ICAR – Indian Institute of Oilseeds Research, Rajendranagar, Hyderabad. The tenure of the project is up to 31.03.2017. The requirement and other terms and conditions for the Junior Research Fellow are as under :-</p>

<p>Junior Research Fellow (One)</p>

<p>    Nucleic acid isolations, molecular analysis, bioinformatic analysis</p>

<p>    .M.Sc.Biotechnology/Bioinformatics</p>

<p>    Post Graduation in Life Sciences.</p>

<p>    Candidates having Post Graduate degree in Basic Sciences with 3 years Bachelor’s degree and 2 years Master’s Degree 1,2,3 should have NET qualification.</p>

<p>    Experience in Plant Biotechnology and Bioinformatics</p>

<p>    Rs.25000/- + 30% HRA per month (At present)</p>

<p>More Info : http://icar-iior.org.in/media/docs/employment/2016/jrf-int.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26537/destruct</guid>
	<pubDate>Mon, 29 Feb 2016 17:34:59 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26537/destruct</link>
	<title><![CDATA[destruct]]></title>
	<description><![CDATA[<p>Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples.</p>
<p>More at&nbsp;https://bitbucket.org/dranew/destruct</p><p>Address of the bookmark: <a href="https://bitbucket.org/dranew/destruct" rel="nofollow">https://bitbucket.org/dranew/destruct</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26571/pattern-searching-in-a-single-genome</guid>
	<pubDate>Mon, 07 Mar 2016 05:02:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26571/pattern-searching-in-a-single-genome</link>
	<title><![CDATA[Pattern Searching in a Single Genome]]></title>
	<description><![CDATA[<p>Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a number of ways of searching with in a single chromosome.</p><p>Address of the bookmark: <a href="https://www.stats.ox.ac.uk/__data/assets/pdf_file/0018/5373/LintonFinalReport.pdf" rel="nofollow">https://www.stats.ox.ac.uk/__data/assets/pdf_file/0018/5373/LintonFinalReport.pdf</a></p>]]></description>
	<dc:creator>Aasha</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26627/scientist-computational-genomics-two-positions</guid>
  <pubDate>Sat, 12 Mar 2016 18:07:56 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist - Computational Genomics (Two Positions)]]></title>
  <description><![CDATA[
<p>ICRISAT is a non-profit, non-political organization that conducts agricultural research for development in Asia and sub-Saharan Africa with a wide array of partners throughout the world. Covering 6.5 million square kilometers of land in 55 countries, the semi-arid tropics is home to over 2 billion people, with 650 million of these being the poorest of the poor. ICRISAT and its partners help empower those living in the semi-arid tropics, especially smallholder farmers, to overcome poverty, hunger, malnutrition and a degraded environment through more efficient and profitable agriculture.</p>

<p>ICRISAT is headquartered in Patancheru near Hyderabad, India, with two regional hubs and five country offices in sub-Saharan Africa. ICRISAT, established in 1972, is a member of the CGIAR Consortium. For more details, see www.icrisat.org.</p>

<p>Responsibilities:Design efficient SQL queries for pulling large sequencing projects.<br />Serve as a technical adviser to the project leadership and provide computational perspective on product design and deliverability.<br />Develop and oversee a rapid and incremental software development and release schedule.<br />Design the software architecture, oversee the implementation and evolution of the design on appropriate hardware platforms.<br />Working collaboratively in a team environment to design, code, test, debug, and document programs for an integrated genomic analysis pipeline in a rapid and incremental software development and release schedule.<br />Supervise and review code development and ensure that software products meet project objectives in terms of functionality, scalability, robustness and user experience.<br />Implement and oversee the QA/QC practices to ensure the development team is adhering to quality standards.<br />Work closely with the application specialist to integrate feedbacks from teams in each CGIAR center into software customization and improvement.<br />Assist in training of breeders in the CGIAR centers to use software developed.<br /> Personal Profile:</p>

<p>The applicant should have:</p>

<p>Understanding of genomics data and advanced knowledge of Java, and C/C++ as the programming languages and any of the scripting language like perl and/or Python, SQL<br />High Performance Computing, data architecture, database platforms and QA/QC practices in software engineering.<br />She/he should have solid experience in software development projects, preferably as a senior programmer or in the software project management role, and in projects involving big data.<br />Excellent communication skills are needed to work in this multi-disciplinary, multi-location and multi-cultural team.<br />Ability to mentor colleagues in quality software development practices is desired.<br />Educational Qualification : Ph. D or Masters Degree in Computational Biology / Computational Genomics or Equivalent with Research Experience in Mentioned Areas.</p>

<p>More at http://www.icrisat.org/careers/</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26850/wellcome-trustdbt-india-alliance-margdarshi-fellowships-2016</guid>
  <pubDate>Tue, 29 Mar 2016 17:47:39 -0500</pubDate>
  <link></link>
  <title><![CDATA[Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016]]></title>
  <description><![CDATA[
<p>The Wellcome Trust/DBT India Alliance invites application for the Margdarshi Fellowship scheme. The scheme provides a unique opportunity for visionary biomedical scientists to lead and nucleate a cutting edge research program in India in collaboration with Indian Host Institution(s). The potential candidates and the Host Institution are encouraged to make a synergistic effort towards establishing a centre of excellence that aims to improve the existing scientific breadth and utilizes the experience of the lead applicant for developing new research platforms. In addition to this, under this programme two eligible Indian institutions may also come together towards creating a new program under the leadership of a visionary scientist.</p>

<p>Eligibility</p>

<p>Interested applicants must</p>

<p>Have around 10 years of experience as independent investigator, and can be of any age or nationality<br />Have Sponsor(s) at not-for-profit Host Institution(s) in India, who is willing to extend the desired commitment and resources for program implementation<br />Provisions</p>

<p>The 5 year Fellowship provides</p>

<p>Generous personal support for the Fellow<br />Salary support for personnel, which may include Assistant Professors<br />Large quantum of funds for equipment, animals and consumables<br />Funds to attend scientific gatherings, for collaborative visits and to organize meetings<br />Overheads for the Host Institution<br />Process</p>

<p>A joint online application is invited from the Applicant and the Sponsor(s). The details of the scheme and the funding mechanism are available on the website at http://wellcomedbt.org/fellowshiptype/margdarshi-fellowships.</p>

<p>Application form can be accessed at https://fellowships.wellcomedbt.org/Login.aspx</p>

<p>Sponsored applications due by 2 May 2016</p>

<p>Send your inquiries to margdarshi@wellcomedbt.org</p>
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