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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/2839?offset=0</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/9639/find-certain-filesdocuments-in-linux-os</guid>
	<pubDate>Sun, 06 Apr 2014 23:56:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/9639/find-certain-filesdocuments-in-linux-os</link>
	<title><![CDATA[Find certain files/documents in Linux OS]]></title>
	<description><![CDATA[<p>As bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search command is required. The Linux Find Command is one of the most important and much used command in Linux sytems. Find command used to search and locate list of files and directories based on conditions you specify for files that match the arguments. Find can be used in variety of conditions like you can find files by permissions, users, groups, file type, date, size and other possible criteria.<br /><br />Through this article we are sharing our day-to-day Linux find command experience and its usage in the form of examples. In this article we will show you the most used 35 Find Commands examples in Linux. We have divided the section into Five parts from basic to advance usage of find command.</p><p><strong>Part I &ndash; Basic Find Commands for Finding Files with Names</strong><br />1. Find Files Using Name in Current Directory<br /><br />Find all the files whose name is gene.txt in a current working directory.<br /><br /># find . -name gene.txt<br /><br />./gene.txt<br /><br />2. Find Files Under Home Directory<br /><br />Find all the files under /home directory with name gene.txt.<br /><br /># find /home -name gene.txt<br /><br />/home/gene.txt<br /><br />3. Find Files Using Name and Ignoring Case<br /><br />Find all the files whose name is gene.txt and contains both capital and small letters in /home directory.<br /><br /># find /home -iname gene.txt<br /><br />./gene.txt<br />./Gene.txt<br /><br />4. Find Directories Using Name<br /><br />Find all directories whose name is Gene in / directory.<br /><br /># find / -type d -name Gene<br /><br />/Gene<br /><br />5. Find fasta Files Using Name<br /><br />Find all php files whose name is gene.fasta in a current working directory.<br /><br /># find . -type f -name gene.fasta<br /><br />./gene.fasta<br /><br />6. Find all PHP Files in Directory<br /><br />Find all fasta files in a directory.<br /><br /># find . -type f -name "*.fasta"<br /><br />./gene.fasta<br />./cancer.fasta<br />./allgene.fasta<br /><br /><strong>Part II &ndash; Find Files Based on their Permissions</strong><br />7. Find Files With 777 Permissions<br /><br />Find all the files whose permissions are 777.<br /><br /># find . -type f -perm 0777 -print<br /><br />8. Find Files Without 777 Permissions<br /><br />Find all the files without permission 777.<br /><br /># find / -type f ! -perm 777<br /><br />9. Find SGID Files with 644 Permissions<br /><br />Find all the SGID bit files whose permissions set to 644.<br /><br /># find / -perm 2644<br /><br />10. Find Sticky Bit Files with 551 Permissions<br /><br />Find all the Sticky Bit set files whose permission are 551.<br /><br /># find / -perm 1551<br /><br />11. Find SUID Files<br /><br />Find all SUID set files.<br /><br /># find / -perm /u=s<br /><br />12. Find SGID Files<br /><br />Find all SGID set files.<br /><br /># find / -perm /g+s<br /><br />13. Find Read Only Files<br /><br />Find all Read Only files.<br /><br /># find / -perm /u=r<br /><br />14. Find Executable Files<br /><br />Find all Executable files.<br /><br /># find / -perm /a=x<br /><br />15. Find Files with 777 Permissions and Chmod to 644<br /><br />Find all 777 permission files and use chmod command to set permissions to 644.<br /><br /># find / -type f -perm 0777 -print -exec chmod 644 {} \;<br /><br />16. Find Directories with 777 Permissions and Chmod to 755<br /><br />Find all 777 permission directories and use chmod command to set permissions to 755.<br /><br /># find / -type d -perm 777 -print -exec chmod 755 {} \;<br /><br />17. Find and remove single File<br /><br />To find a single file called gene.txt and remove it.<br /><br /># find . -type f -name "gene.txt" -exec rm -f {} \;<br /><br />18. Find and remove Multiple File<br /><br />To find and remove multiple files such as .fa or .gb, then use.<br /><br /># find . -type f -name "*.fa" -exec rm -f {} \;<br /><br />OR<br /><br /># find . -type f -name "*.gb" -exec rm -f {} \;<br /><br />19. Find all Empty Files<br /><br />To file all empty files under certain path.<br /><br /># find /tmp -type f -empty<br /><br />20. Find all Empty Directories<br /><br />To file all empty directories under certain path.<br /><br /># find /tmp -type d -empty<br /><br />21. File all Hidden Files<br /><br />To find all hidden files, use below command.<br /><br /># find /tmp -type f -name ".*"<br /><br /><strong>Part III &ndash; Search Files Based On Owners and Groups</strong><br />22. Find Single File Based on User<br /><br />To find all or single file called gene.txt under / root directory of owner root.<br /><br /># find / -user root -name gene.txt<br /><br />23. Find all Files Based on User<br /><br />To find all files that belongs to user Rahul under /home directory.<br /><br /># find /home -user rahul<br /><br />24. Find all Files Based on Group<br /><br />To find all files that belongs to group Developer under /home directory.<br /><br /># find /home -group developer<br /><br />25. Find Particular Files of User<br /><br />To find all .txt files of user Rahul under /home directory.<br /><br /># find /home -user rahul -iname "*.txt"<br /><br /><strong>Part IV &ndash; Find Files and Directories Based on Date and Time</strong><br />26. Find Last 50 Days Modified Files<br /><br />To find all the files which are modified 50 days back.<br /><br /># find / -mtime 50<br /><br />27. Find Last 50 Days Accessed Files<br /><br />To find all the files which are accessed 50 days back.<br /><br /># find / -atime 50<br /><br />28. Find Last 50-100 Days Modified Files<br /><br />To find all the files which are modified more than 50 days back and less than 100 days.<br /><br /># find / -mtime +50 &ndash;mtime -100<br /><br />29. Find Changed Files in Last 1 Hour<br /><br />To find all the files which are changed in last 1 hour.<br /><br /># find / -cmin -60<br /><br />30. Find Modified Files in Last 1 Hour<br /><br />To find all the files which are modified in last 1 hour.<br /><br /># find / -mmin -60<br /><br />31. Find Accessed Files in Last 1 Hour<br /><br />To find all the files which are accessed in last 1 hour.<br /><br /># find / -amin -60<br /><br /><strong>Part V &ndash; Find Files and Directories Based on Size</strong><br />32. Find 50MB Files<br /><br />To find all 50MB files, use.<br /><br /># find / -size 50M<br /><br />33. Find Size between 50MB &ndash; 100MB<br /><br />To find all the files which are greater than 50MB and less than 100MB.<br /><br /># find / -size +50M -size -100M<br /><br />34. Find and Delete 100MB Files<br /><br />To find all 100MB files and delete them using one single command.<br /><br /># find / -size +100M -exec rm -rf {} \;<br /><br />35. Find Specific Files and Delete<br /><br />Find all .gb files with more than 10MB and delete them using one single command.<br /><br /># find / -type f -name *.gb -size +10M -exec rm {} \;</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22286/jrf-bioinformatics-pune-university</guid>
  <pubDate>Wed, 06 May 2015 06:21:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ Pune University]]></title>
  <description><![CDATA[
<p>Pune University is inviting applications from indian citizens for recruiting following posts:</p>

<p>Vacancies:<br />Junior Research Fellow-04<br />Age Limits:<br />Candidates age should be not more than 28 years.<br />Qualification:<br />Candidates should possess M.Sc in Microbiology/ Marine microbiology/Marine Biotechnology/ Bioinformatics/Zoology or equivalent degree with minimum 60% marks.<br />Selection Process:<br />Shortlisted candidates will be called for interview.<br />How to Apply:<br />Eligible candidates may send their applications in the prescribed format along with CV in an envelope should be superscribed as the "Application for the post of JRF" to Head Department of Zoology, Savitribai Phule Pune University on or before 10-05-2015.<br />Last Date:<br />10-05-2015</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22436/ra-bioinformatics-at-national-bureau-of-animal-genetic-resources</guid>
  <pubDate>Thu, 28 May 2015 19:25:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES]]></title>
  <description><![CDATA[
<p>NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES</p>

<p>Near Basant Vihar G.T. Road Bypass P.O. Box No.129</p>

<p>Karnal - 132001 (Haryana)</p>

<p>WALK-IN-INTERVIEW</p>

<p>A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at 10:30 AM on 10.06.2015 to select One Research Associate as per details given below:</p>

<p>1. One post of Research Associate under National Fellow project entitled “Genome data mining to unravel molecular basis of thermotolerance and adaptation to diverse environments in native cattle and buffaloes”.</p>

<p>The post duration is Upto 22.05.2016 or earlier &amp; Co-terminus with the project.</p>

<p>Essential Qualifications: Master’s degree (M.Sc. / M.V.Sc.) in Biotechnology/ Animal Genetics and Breeding/ Life Sciences/ Bioinformatics with 2 Years research experience in relevant subject or Ph.D in any of the above subjects.</p>

<p>Desirable: Working Experience in molecular biology, gene expression/ microarray data analysis, SNP genotyping and sequence data analysis, mammalian cell-culture handling etc.</p>

<p>Emolument: Rs. 23,000/- per month + HRA as per admissibility</p>

<p>Research Associate: ONE</p>

<p>Duration of engagement: Upto 22.05.2016 or earlier Co-terminus with the project</p>

<p>Age Limit:  40 years for Men  45 years for women as on date of interview</p>

<p>Note: Relaxation in age will be admissible for SC/ST &amp; OBC candidates as per Govt. of India /ICAR norms</p>

<p>1. The applicants must bring with them original documents and brief of research work done during post graduation along with a set of photocopy and latest two passport size photographs. 2. A panel of selected candidates will also be made which may be utilized for filling of positions of shorter durations in future if demand arises. 3. Experience certificate in original, if any 4. The above positions are purely on temporary basis and are coterminus with the project. No TA/DA will be paid to attend the interview. 5. Any other clarifications can be had on the date of interview. 6. The Director’s decision will be final and binding on all respects.</p>

<p>Advertisement: http://210.212.93.85/RAadvertisiment.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22615/jrf-position-%E2%80%93-bioinformatics-department-aravind-medical-research-foundation-amrf-madurai</guid>
  <pubDate>Fri, 12 Jun 2015 05:42:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Position – Bioinformatics Department, Aravind Medical Research Foundation (AMRF), Madurai.]]></title>
  <description><![CDATA[
<p>Applications are invited from eligible candidates for the post of Junior Research Fellow (JRF) to work at the Department of Bioinformatics, Aravind Medical Research Foundation in the following DST-SERB funded project “Clinical exome analysis pipeline for eye disease next-generation sequencing panel”.</p>

<p>Post: Junior Research Fellow (1 Position)</p>

<p>Duration: Three years</p>

<p>Qualification: First class in M.Sc/M.tech in Bioinformatics/Life Sciences/Biophysics/ Biostatistics/Bioengineering. Experience in Database development, NGS data analysis, Systems Biology and Structural Bioinformatics is desired. Preference will be given to the candidates with good computer programming skills in C, C++, R, Perl, PHP, Unix Scripting etc.</p>

<p>Selected candidates will be paid fellowship as per existing DST norms.</p>

<p>How to apply:</p>

<p>Candidates are requested to apply through one of the two modes given below<br />1. Online application – Click here to submit the online application https://docs.google.com/forms/d/16h2GLnQ-Ny-tLtlgfY3Bx3sCjeHJE30cfhJaDqW_uRs/viewform?c=0&amp;w=1<br />2. Application forms can be downloaded from here.https://docs.google.com/file/d/0BwwJEudQStxFWXdNWXl4NWtDaWc/edit<br /> Filled in application form should be sent by post to Dr. D. Bharanidharan, Department of Bioinformatics, Aravind Medical Research Foundation No 1, Anna Nagar Madurai – 625 020,</p>

<p>Candidates should apply by online or submit their applications by post on or before 15th June, 2015. Only Short listed candidates will be called for an interview. No TA/DA will be paid.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22780/ra-bioinformatics-at-institution-centre-for-human-genetics-bangalore</guid>
  <pubDate>Wed, 17 Jun 2015 19:14:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Institution: Centre for Human Genetics,  Bangalore]]></title>
  <description><![CDATA[
<p>Institution: Centre for Human Genetics, <br />Bangalore <br />Discipline: Molecular Genetics of Human Disease Biology </p>

<p>Minimum qualification: MSc in any branch of life sciences</p>

<p>Applications are invited for the position of a Research Assistant in the Centre for Human Genetics, Bangalore. </p>

<p>The project involves identification of mutations in MPS (mucopolysaccharidosis) patients, and study of their predicted effects to understand how the mutations lead to disease. </p>

<p>Techniques used will be genomic DNA isolation, PCR, DNA sequencing and sequence analysis. Computational tools would also be used to analyse and interpret data. </p>

<p>Candidates may be assigned work in the ongoing project or in new ones. </p>

<p>The candidate who is selected and joins would acquire hands-on experience in research and the capability to conduct insightful research. </p>

<p>Candidates applying for the position should have an MSc in any branch of life sciences. Those with research experience in cell and molecular biology, and high NET/ GATE score would be preferred. </p>

<p>The successful applicant is expected to stay for at least one and a half years. </p>

<p>Please apply with CV to Sudha Srinivasan (sudha@ibab.ac.in), stating where you saw this ad.</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23278/research-associate-project-fellow-biological-sciences-at-igib</guid>
  <pubDate>Sun, 12 Jul 2015 07:57:27 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate, Project Fellow (Biological Sciences) at IGIB]]></title>
  <description><![CDATA[
<p>Research Associate, Project Fellow (Biological Sciences)<br />Institute of Genomics &amp; Integrative Biology (IGIB) - New Delhi, Delhi<br />Pay Scale: Rs. 22,000/- + 30 % HRA per month<br />Educational Requirements: PhD in any branch of Biological Sciences with specialization in Bioinformatics with at least one research paper in Science Citation Indexed (SCI) journal<br />Desired Skills: Knowledge of molecular dynamics simulations<br />Details will be available at: http://www.igib.res.in/sites/default/files/24July2015.pdf</p>

<p>Project Fellow (Biological Sciences) Pay Scale: Rs. 16,000/- + 30 % HRA per month<br />Educational Requirements: M.Sc./B.Tech in life sciences/Biological sciences with at least 55 % marks<br />Experience Requirements: Research experience.<br />Details will be available at: http://www.igib.res.in/sites/default/files/24July2015.pdf</p>

<p>No of Post: 01<br />How To Apply: 1. Please fill up the proforma by clicking on the following link HR Online Form. 2. Candidate cannot apply for more than two posts. Last date of receiving application is 12-07-2015. No application would be entertained with “result awaited” status or after due date. List of shortlisted candidates will be put up on CSIR-IGIB website. No TA/DA will be paid to the candidates to attend the interview. The engagement shall be as per guidelines of CSIR/Funding agency. Candidates will have an option to give reply in Hindi. Note: The shortlisted candidates, have to report at 09:00 AM at Mall Road Campus, Delhi – 110007 on the day of interview along with any Photo ID card, (without photo ID card interview will not be conducted). 3 copies of updated signed C. V. (clearly mentioning Date of Birth and Highest Qualification with percentage), Dissertation (if any), PhD thesis (if any) and original certificates/Self attested photocopies for verification.<br />Detail of Interview: 24 July, 2015 at 10:30 AM<br />Age Limit: 28 Years</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23378/ra-bioinformatics-at-bharathidasan-university</guid>
  <pubDate>Fri, 17 Jul 2015 19:40:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Bharathidasan University]]></title>
  <description><![CDATA[
<p>Applications are invited from individuals who have high motivation to do research for the DBT sponsored project o n “Establishment of National Repository for Microalgae &amp; Cyanobacteria” funded by Department of Biotechnology, Govt. of India under the supervision of Dr. N. Thajuddin, Principal Investigator, Department of Microbiology, Bharathidasan University, Tiruchirappalli- 620 024.</p>

<p>1. Research Associate – 1 No.</p>

<p>Rs. 36,000/38,000/40,000 per month for I, II and III year + 20% HRA</p>

<p>Essential : Doctoral degree in relevant subject from recognized University/ Institutes</p>

<p>Desirable: Research experience in molecular biology and bioinformatics.</p>

<p>Interested candidates can send their complete CV in plain paper with a passport size photograph, with details of marks secured in all subjects from plus two stage (with proof, full postal address, sex, date of birth, community etc., along with additional qualification or experiences and two address of references whom could be contacted.</p>

<p>DEPARTMENT OF MICROBIOLOGY SCHOOL OF LIFE SCIENCES UNIVERSITY Dr. N. THAJUDDIN Professor &amp; Head Dean, Faculty of Science, Technology &amp; Engineering Tiruchirappalli – 620 024, India, Phone: +91 431 2407082; Mobile +91 098423 79719; E-mail: nthaju2002@yahoo.com</p>

<p>Application should reach the Principal Investigator on or before 5.8.2015 by Speed post/Couriers/Email (nthaju2002@yahoo.com), with subject printed as “Application for Research Associate /Technical Assistant /Lab attendant” in the envelop. Qualifying candidates will be short listed and communicated with date of interview. No TA and DA will be given for attending the interview. Address for Communication Dr.N.Thajuddin Principal Investigator Department of Microbiology Bharathidasan University Tiruchirappalli – 620 024, Tamil Nadu.</p>

<p>Advertisement: www.bdu.ac.in/adv/microbiology_advt.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23428/icgeb-bioinformatics-research-associate-vacancy</guid>
  <pubDate>Thu, 23 Jul 2015 19:45:16 -0500</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics Research Associate Vacancy]]></title>
  <description><![CDATA[
<p>Junior Research Fellow (JRF) / Postdoc positions in Cell and Structural biology at ICGEB, New Delhi with Amit Sharma</p>

<p>Research positions are open starting 15th August 2015.</p>

<p>Projects are specifically for protein structure analysis. Projects also involve drug binding studies both computationally and experimentally.</p>

<p>CSIR/SPM/INSPIRE/DBT/UGC JRF/post-doc fellowships are essential for applications.</p>

<p>Email curriculum vitae to sb.icgeb@gmail.com by 14 August 2015</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24258/postdoctoral-fellowship-at-department-of-psychiatry-warneford-hospital-oxford</guid>
  <pubDate>Tue, 01 Sep 2015 05:24:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellowship at Department of Psychiatry, Warneford Hospital, Oxford]]></title>
  <description><![CDATA[
<p>Applications are invited for a postdoctoral research assistant to work in the Translational Neuroscience and Dementia Research Group (TNDRG) on a project using informatics approaches to understand and prevent dementia, specifically on the role of the immune system in Alzheimer’s. The post is for a fixed-term duration of 1 year.</p>

<p>Working with other members of the TNDRG you will analyse complex genomic and epidemiological datasets, evaluating which computational tools are most suitable. You will contribute to the generation of innovative tools for linking epidemiological and multilevel omics datasets, ensuring that computer programs are written in a form that other collaborators can use and expand.</p>

<p>You will have or be close to completion of a PhD in either: bioinformatics; neuroscience; machine learning; statistics; epidemiology; neurology; or other relevant field. You will have experience programming on either R, Matlab, Python, C++, Java or any other imperative, object oriented or functional language.</p>

<p>Please direct Informal enquiries to Dr Alejo Nevado-Holgado (alejo.nevado-holgado@psych.ox.ac.uk).</p>

<p>You will be required to upload a supporting statement explaining how you meet the selection criteria for the post, a CV, and details of two referees as part of your online application.</p>

<p>The closing date for applications is 12.00 midday on 2 September 2015. Interviews will be held on Tuesday 15 September 2015. </p>

<p>https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=118696</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24328/walk-in-interview-for-srf-jrf-posts-at-junagadh-agricultural-university</guid>
  <pubDate>Tue, 08 Sep 2015 11:58:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University]]></title>
  <description><![CDATA[
<p>Job Description: Walk-in-interview for SRF, JRF posts at Junagadh Agricultural University</p>

<p>Junagadh Agricultural University has given a recruitment notification to fill the posts of Senior, Junior Research Fellows in the establishment.</p>

<p>Name &amp; No: of Posts:</p>

<p>1. Senior Research Fellow: 05<br />2. Junior Research Fellow: 05</p>

<p>Title of the Projects under Senior Research Fellow:</p>

<p>1. Molecular mapping of important traits and their transfer through marker assisted selection in Groundnut and cotton<br />2. Aflatoxin and its management in groundnut at Saurashtra region of Gujarat.<br />3. Improvement in Agricultural Production through nanotechnological inventions at Junagadh.<br />4. Synthesis and Characterisation of chitosan based NPK-Nano fertilizers</p>

<p>Title of the Projects under Junior Research Fellow:</p>

<p>1. Improvement in Agricultural Production Through Nanotechnological Inventions at Junagadh.<br />2. Synthesis and Characterisation of chitosan based NPK-Nano fertilizers</p>

<p>Required Eligibility Criteria:</p>

<p>1. Senior Research Fellow:</p>

<p>Age Limit: Candidates age must be maximum 35 years<br />Educational Qualification: M.Sc in Nanotechnology/Biotechnology/Bioinformatics<br />Salary: Rs. 16,000/- + HRA for first and second year, Rs. 18,000/- + HRA during third year</p>

<p>2. Junior Research Fellow:</p>

<p>Age Limit: Candidates age must be maximum 30 years<br />Educational Qualification: B.Sc or M.Sc degree in the field of Nanotechnology/Biotechnology<br />Salary: Rs. 9,600/- , Rs. 14,400/- p.m</p>

<p>Eligible candidates may attend the walk-in-interview on 10-09-2015 with necessary certificates of testimonials</p>

<p>Click Here for Detailed Recruitment Notification<br />http://www.jau.in/attachments/Advt/BiotechSRFJRF.pdf</p>
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