<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/28439?offset=1280 https://bioinformaticsonline.com/news/view/27311/release-notes-for-genome-workbench-2105 Thu, 12 May 2016 13:49:41 -0500 https://bioinformaticsonline.com/news/view/27311/release-notes-for-genome-workbench-2105 <![CDATA[Release Notes for Genome Workbench 2.10.5]]> New Features in latest release

  • New ProSplign tool integrated with Genome Workbench (Tutorial, Video)
  • New export function for BAM/cSRA coverage graphs (Tutorial)
  • New export function for alignments GFF3 format ((Tutorial))
  • Tree View: implemented new export mode based on selections (tutorial coming)
  • Tree View: added support for distance based circular trees
  • Tree View: new rooting mode (Midpoint Root) results in more balanced trees (Tutorial)
  • Tree View: added possibility to right-click on an edge between two nodes and "Place Root at Middle of Branch" – to re-root at mid-branch (Tutorial)
]]> Jit https://bioinformaticsonline.com/bookmarks/view/27331/andi Fri, 13 May 2016 05:16:35 -0500 https://bioinformaticsonline.com/bookmarks/view/27331/andi <![CDATA[Andi]]> This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes.

This readme covers all necessary instructions for the impatient to get andi up and running. For extensive instructions please consult the manual.

More at https://github.com/evolbioinf/andi/

Address of the bookmark: http://bioinformatics.oxfordjournals.org/content/early/2015/01/13/bioinformatics.btu815.full

]]> Jit https://bioinformaticsonline.com/bookmarks/view/27475/polyphen-2-prediction-of-functional-effects-of-human-nssnps Mon, 23 May 2016 02:27:25 -0500 https://bioinformaticsonline.com/bookmarks/view/27475/polyphen-2-prediction-of-functional-effects-of-human-nssnps <![CDATA[PolyPhen-2: Prediction of functional effects of human nsSNPs]]> PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.

Address of the bookmark: http://genetics.bwh.harvard.edu/pph2/

]]> Anjana https://bioinformaticsonline.com/bookmarks/view/27432/gkno Fri, 20 May 2016 18:56:37 -0500 https://bioinformaticsonline.com/bookmarks/view/27432/gkno <![CDATA[GKNO]]> gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno.

http://gkno.me/how-to/install.html

http://gkno.me/software.html

Address of the bookmark: http://gkno.me/

]]> Neel