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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28844?offset=530</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29016/traineeshipstudentship-conducts-university-of-delhi-gargi-college</guid>
  <pubDate>Mon, 05 Sep 2016 03:45:58 -0500</pubDate>
  <link></link>
  <title><![CDATA[Traineeship/Studentship conducts University of Delhi (Gargi College)]]></title>
  <description><![CDATA[
<p>Traineeship/Studentship cunducts University of Delhi (Gargi College) on purely temporary for a period of six months.<br />Traineeship — 01 (one post)<br />Essential Qualification: Post Graduate degree in Bioinformatics or any other branch of Life Sciences preferably with dissertation in Bioinformatics. Desirable Qualification: Prior knowledge of programming languages such as C, VB, SQL etc. and software/database development<br />Studentship- 01 (one post)<br />Essential Qualifications: Final year Post Graduate students pursuing a degree in Bioinformatics or any branch of Life Science with knowledge of bioinformatics<br />Salary: Rs.8000/- p.m.<br />How to apply<br />Interested candidates are required to appear for the walk in interview on 14th. September, 2016 at 9.30 AM in Principal's Office, Gargi College, Sirifort Road, N. Delhi-110049</p>

<p>More at http://www.du.ac.in/du/index.php?mact=News,cntnt01,detail,0&amp;cntnt01articleid=12859&amp;cntnt01returnid=83</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29263/srf-bioinformatics-at-bose-institute-india</guid>
  <pubDate>Thu, 29 Sep 2016 09:39:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[SRF Bioinformatics at Bose Institute, India]]></title>
  <description><![CDATA[
<p>Advt. No. S/DPB(CB)/17/2016-17 <br />Junior Research Assistant/ Senior Research Assistant  Job vacancies in Bose Institute on temporary basis<br />Project Title : “Genome wide transcriptome analysis to identity MYMIV-stress related genomic resources of blackgram”<br />Junior Research Assistant <br />Qualification : Good academic record in B.Sc. and M.Sc. in Botany or Biotechnology from reputed Universities. Must have good practical hand, this should be certified by two Senior/reputed PG teachers on a scale of 10. <br />Desirable : Preference will be given to those who already have some research experience (for at least 2 months). <br />Consolidated Pay : Rs. 16,400/- p.m. <br />Age Limit : Below 28 years (relaxable in case of SC/ST/OBC/Women candidates only as per rules).<br />Senior Research Assistant <br />Qualification : B.Sc. in Biotechnology and M.Sc. in Biotechnology or Bioinformatics. Hands on training in Bioinformatics. At least two Research Publications with Bioinformatics components. <br />Desirable : Preference will be given to the candidates who have previous experience in Next Gen Sequencing data analysis of genomic/transcriptome/miRNA. <br />Consolidated Pay : Rs. 18,700/- p.m.  <br />Age Limit : Below 30 years (relaxable in case of SC/ST/OBC/Women candidates only as per rules).</p>

<p>http://www.boseinst.ernet.in/advertisement.html</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29953/traineeship-at-jawaharlal-nehru-tropical-botanic-garden-and-research-institute</guid>
  <pubDate>Fri, 25 Nov 2016 08:07:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[Traineeship at JAWAHARLAL NEHRU TROPICAL BOTANIC GARDEN AND RESEARCH INSTITUTE]]></title>
  <description><![CDATA[
<p>JAWAHARLAL NEHRU TROPICAL BOTANIC GARDEN AND RESEARCH INSTITUTE</p>

<p>THIRUVANANTHAPURAM - 695 562</p>

<p>Traineeship on Bioinformatics(2)</p>

<p>First class M.Sc. Bioinformatics/ Agriculture/ Botany/ Biotechnology @ Rs.8000</p>

<p>Those candidates who fulfill the above criteria may attend a walk PCC Coordinator in-interview on 28th November 2016 at Saraswathy Thangavelu center, JNTBGRI, Puthenthope, Thiruvananthapuram between at 10.00 am and 2.00 pm with all the relevant document and testimonials.</p>

<p>No TA/DA will be given to candidates for attending the interview.</p>

<p>More Info : http://jntbgri.res.in/downloads/traineeship_notification.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29588/research-associate-and-junior-research-fellow-at-north-eastern-hill-university-tura-meghalaya</guid>
  <pubDate>Fri, 28 Oct 2016 09:54:43 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate and Junior Research Fellow at North-Eastern Hill University - Tura, Meghalaya]]></title>
  <description><![CDATA[
<p>Research Associate and Junior Research Fellow <br />North-Eastern Hill University - Tura, Meghalaya <br />₹18,000 a month<br />Applications are invited for the post of Research Associate and JRF in the DBT sponsored Bioinformatics Infrastructure Facility (BIF), posts are purely temporary and terminable at anytime without prior notice or assigning any reason thereof. </p>

<p>Research Associate : <br />Essential Qualification: Ph.D in Bioinformatics/Biotechnology/Life Science from a reocngised univeristy/institute <br />Pay: Rs.36000-/- + Admissible 10% HRA per month <br />Age: Below 35 years </p>

<p>Junior Research Fellow <br />Essential Qualification: M.Sc in Bioinformatics/Biotechnology/Life Science from a reocngised univeristy/institute <br />Pay: Rs.18000-/- + per month <br />Age: Below 35 years </p>

<p>Last date for receving application by mail or post is 08.11.2016 </p>

<p>Company Info. <br />North-Eastern Hill University </p>

<p>Bioinformatics Infrastructure Facility (BIF) Department of RDAP North-Eastern Hill University, Tura Campus Tura-794002, Meghalaya</p>

<p>More at http://www.nehu.ac.in/Advertisements/BIFTuraManpowerAdvt_25102016.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29624/information-officer-at-iiar-gujarat</guid>
  <pubDate>Fri, 04 Nov 2016 05:19:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Information Officer at IIAR, Gujarat]]></title>
  <description><![CDATA[
<p>Walk in interview at 10.30 am on Nov 11th, 2016 for the following position at Distributed Information Sub-Centre (DISC) established by Dept. Of Biotechnology, Govt. of India at Indian Institute of Advanced Research, Gandhinagar, Gujarat</p>

<p>Position (scale), qualifications and experience</p>

<p>1. Information Officer (Rs 8000-275-13500): one post <br />Qualifications and experience: MCA, Post-Graduate in any field of biosciences, bioinformatics with at least two years of experience in working in a bioinformatics setup and good knowledge of linux operating system and computer networking.</p>

<p>General terms and conditions: <br />1. The above engagements is presently till March 31st, 2017. However on extension of project grant and satisfactory performance of the candidate, your services can be extended beyond March 31st, 2017 based on the terms and conditions of extension of project grant.</p>

<p>2. It is not an appointment with the institute and will not confer any right to the incumbent to any claim implicit or explicit on any position.</p>

<p>3.No TA/DA will be paid for attending the interview. Outstation candidates have to make their own arrangement for their stay.</p>

<p>4.Candidates, appearing in the walk-in interview are requested to bring the hard copy of application addressed to Dr. Anju Pappachan with latest photograph, CV mentioning qualifications, work experience and name of two referees and one page write up as to why you would like to join the project.</p>

<p>Address: <br />Dr. Anju Pappachan <br />Indian Institute of Advanced Research (IIAR), <br />University  and Institute of Advanced Research, <br />The Puri Foundation for Education in India, <br />Koba Institutional Area, <br />Gandhinagar- 382 007, Gujarat, India. Contact no. 079-30514152 <br />e-mail- anju@iiar.res.in</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29849/ra-bioinformatics-at-national-institute-of-cancer-prevention-research-icmr</guid>
  <pubDate>Thu, 17 Nov 2016 04:11:09 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NATIONAL INSTITUTE OF CANCER PREVENTION &amp; RESEARCH (ICMR)]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF CANCER PREVENTION &amp; RESEARCH (ICMR)</p>

<p>Noida 201301 (U.P)</p>

<p>Applications are invited upto 21.11.2016 from interested candidates as per details available on NICPR website (www.nicpr.res.in)/ ICMR website (www.icmr.nic.in) to fill up following temporary position in the time bound DHR Project entitled “Next generation EGFR inhibitor identification using ligand based QSAR technique” under Dr. Subhash M. Agarwal, Scientist-D, Division of Bioinformatics.</p>

<p>Research Assistant (One)</p>

<p>Rs.27000/- p.m. (Fixed/temporary)</p>

<p>Essential: M.Sc. in Bioinformatics or related field.</p>

<p>Desirable: Experience in QSAR and structure based drug designing.</p>

<p>More Info : www.icmr.nic.in/icmrnews/NICPR_Advertisement%20for%20RA.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/30245/venkatesh-lab</guid>
  <pubDate>Tue, 20 Dec 2016 04:38:01 -0600</pubDate>
  <link></link>
  <title><![CDATA[Venkatesh Lab]]></title>
  <description><![CDATA[
<p>We are using a comparative genomics approach to better understand the structure, function and evolution of the human genome. Our group is one of the pioneers in the field of comparative genomics. We proposed the compact genome of the fugu (Takifugu rubripes) as a model vertebrate genome in 1993 (Nature 366: 265-268, 1993) and determined its whole genome sequence in 2002 (Science 297: 1301-1310, 2002).</p>

<p>More at <br />https://zfin.org/ZDB-LAB-110408-1<br />http://www.imcb.a-star.edu.sg/php/venkatesh.php</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30336/finding-patterns-in-biological-sequences</guid>
	<pubDate>Thu, 22 Dec 2016 10:30:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30336/finding-patterns-in-biological-sequences</link>
	<title><![CDATA[Finding Patterns in Biological Sequences]]></title>
	<description><![CDATA[<p>In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through http://genetics.uwaterloo.ca/&sim;tvinar/cs798g/motif.</p><p>Address of the bookmark: <a href="http://engr.case.edu/li_jing/papers/00798gpattern.pdf" rel="nofollow">http://engr.case.edu/li_jing/papers/00798gpattern.pdf</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/30654/source-code-and-pseudo-code</guid>
	<pubDate>Mon, 23 Jan 2017 10:17:35 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/30654/source-code-and-pseudo-code</link>
	<title><![CDATA[Source Code and Pseudo Code !!]]></title>
	<description><![CDATA[<p>An <span style="text-decoration: underline;">algorithm</span> is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally "sequence," "selection, " "iteration," and a case-type statement.</p><p>In C, "sequence statements" are imperatives. The "selection" is the "if then else" statement, and the iteration is satisfied by a number of statements, such as the "while," " do," and the "for," while the case-type statement is satisfied by the "switch" statement.</p><hr><p><span style="text-decoration: underline;">Pseudocode</span> is an artificial and informal language that helps programmers develop algorithms. Pseudocode is a "text-based" detail (algorithmic) design tool.</p><p>The rules of Pseudocode are reasonably straightforward. All statements showing "dependency" are to be indented. These include while, do, for, if, switch. Examples below will illustrate this notion.</p><p><strong> GUIDE TO PSEUDOCODE LEVEL OF DETAIL: Given record/file descriptions, pseudocode should be created in sufficient detail so as to directly support the programming effort. It is the purpose of pseudocode to elaborate on the algorithmic detail and not just cite an abstraction. </strong></p><hr><p>Examples:</p><p>1.</p><pre>If student's grade is greater than or equal to 60
    Print "passed"
else
    Print "failed"  
endif
</pre><hr><p>2.</p><pre>  
Set total to zero
Set grade counter to one
While grade counter is less than or equal to ten
    Input the next grade
    Add the grade into the total
endwhile 
Set the class average to the total divided by ten
Print the class average.
</pre><hr><p>3.</p><pre>Initialize total to zero
Initialize counter to zero
Input the first grade
while the user has not as yet entered the sentinel
   add this grade into the running total 
   add one to the grade counter  
   input the next grade (possibly the sentinel)
endwhile

if the counter is not equal to zero
   set the average to the total divided by the counter
   print the average  
else
   print 'no grades were entered' 
endif 
</pre><hr><p>4.</p><pre>initialize passes to zero
initialize failures to zero
initialize student to one
while student counter is less than or equal to ten
    input the next exam result  
    if the student passed</pre><p>add one to passes else add one to failures add one to student counter endif endwhile print the number of passes print the number of failures if eight or more students passed print "raise tuition" endif</p><hr><h3><strong>5.</strong></h3><pre>Larger example:  

NOTE:  NEVER ANY DATA DECLARATIONS IN PSEUDOCODE

Print out appropriate heading and make it pretty
While not EOF do:
     Scan over blanks and white space until a char is found 
	(get first character on the line)
     set can't-be-ascending-flag to 0
     set consec cntr to 1
     set ascending cntr to 1
     putchar first char of string to screen
     set read character to hold character
     While next character read != blanks and white space
          putchar out on screen
          if new char = hold char + 1
               add 1 to consec cntr
               set hold char = new char
               continue
          endif
          if new char &gt;= hold char 
               if consec cntr &lt; 3 
                    set consec cntr to 1
               endif
               set hold char = new char
               continue
          endif
          if new char &lt; hold char
               if consec cntr &lt; 3
                    set consec cntr to 1
               endif
               set hold char = new char
               set can't be ascending flag to 1
               continue
           endif
     end while
     if consec cntr &gt;= 3 
          printf (Appropriate message 1 and skip a line)
          add 1 to consec total
     endif
     if  can't be ascending flag = 0
          printf (Appropriate message 2 and skip a line)
          add 1 to ascending total
     else
          printf (Sorry message and skip a line)
          add 1 to sorry total
     endif
end While
Print out totals:  Number of consecs, ascendings, and sorries.
Stop
</pre><p>Some Keywords That Should be Used And Additional Points</p><p>For looping and selection, The keywords that are to be used include Do While...EndDo; Do Until...Enddo; While .... Endwhile is acceptable. Also, Loop .... endloop is also VERY good and is language independent. Case...EndCase; If...Endif; Call ... with (parameters); Call; Return ....; Return; When;</p><p>Always use scope terminators for loops and iteration.</p><p>As verbs, use the words Generate, Compute, Process, etc. Words such as set, reset, increment, compute, calculate, add, sum, multiply, ... print, display, input, output, edit, test , etc. with careful indentation tend to foster desirable pseudocode. Also, using words such as Set and Initialize, when assigning values to variables is also desirable.</p><p>More on Formatting and Conventions in Pseudocoding</p><ul>
<li>INDENTATION in pseudocode should be identical to its implementation in a programming language. Try to indent at least four spaces.</li>
<li>As noted above, the pseudocode entries are to be cryptic, AND SHOULD NOT BE PROSE. NO SENTENCES.</li>
<li>No flower boxes (discussed ahead) in your pseudocode.</li>
<li>Do not include data declarations in your pseudocode.</li>
<li>But do cite variables that are initialized as part of their declarations. E.g. "initialize count to zero" is a good entry.<hr>Function Calls, Function Documentation, and Pseudocode</li>
<li>Calls to Functions should appear as:
<ul>     </ul>
</li>
<li>Returns in functions should appear as:
<ul> </ul>
</li>
<li>Function headers should appear as:
<ul>     </ul>
</li>
<li>Note that in C, arguments and parameters such as "fieldn" could be written: "pointer to fieldn ...."</li>
<li>Functions called with addresses should be written as:
<ul>         </ul>
</li>
<li>Function headers containing pointers should be indicated as:
<ul>        </ul>
</li>
<li>Returns in functions where a pointer is returned:
<ul>   </ul>
</li>
<li>It would not hurt the appearance of your pseudocode to draw a line or make your function header line "bold" in your pseudocode. Try to set off your functions.</li>
<li>Try to use scope terminators in your pseudocode and source code too. It really hels the readability of the text.<hr>Source Code</li>
<li>EVERY function should have a flowerbox PRECEDING IT. This flower box is to include the functions name, the main purpose of the function, parameters it is expecting (number and type), and the type of the data it returns. All of these listed items are to be on separate lines with spaces in between each explanatory item.</li>
<li>FORMAT of flowerbox should be
<p>&nbsp;</p>
<pre>	 ********************************************************
	 Function:   ( cryptic text describing single function
		     ....... (indented like this) 	
		     .......
	 Calls:      Start listing functions "this" function calls
		     Show these functions:  one per line, indented

	 Called by:  List of functions that calls "this" function
		     Show these functions:  one per line, indented.

	 Input Parameters:  list, if appropriate; else None
	 
	 Returns:    List, if appropriate.
	 ****************************************************************
</pre>
</li>
<li>INDENTATION is critically important in Source Code. Follow standard examples given in class. If in doubt, ASK. Always indent statements within IFs, FOR loops, WILLE loops, SWITCH statements, etc. a consistent number of spaces, such as four. Alternatively, use the tab key. One or two spaces is insufficient.</li>
<li>Use scope terminators at the end of if statements, for statements, while statements, and at the end of functions. It will make your program much more readable.
<p><strong> SPELLING ERRORS ARE NOT ACCEPTABLE </strong></p>
</li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30747/11th-international-joint-conference-on-biomedical-engineering-systems-and-technologies</guid>
  <pubDate>Wed, 01 Feb 2017 17:39:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[11th International Joint Conference on Biomedical Engineering Systems and Technologies]]></title>
  <description><![CDATA[
<p>BIOSTEC, the 11th International Joint Conference on Biomedical Engineering Systems and Technologies.<br /> Registration to BIOINFORMATICS allows free access to all other BIOSTEC conferences. </p>

<p>Upcoming Deadlines<br />Regular Paper Submission: July 31, 2017 <br />Regular Paper Authors Notification: October 16, 2017 <br />Regular Paper Camera Ready and Registration: October 30, 2017 </p>

<p>The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together researchers and practitioners interested in the application of computational systems, algorithmic concepts and information technologies to address challenging problems in Biomedical research with a particular focus on the emerging problems in Bioinformatics and computational biology. There is a tremendous need to explore how mathematical, statistical and computational models can be used to better understand biological processes and systems, while developing new methodologies and tools to analysis the massive currently-available biological data. Areas of interest to this community include systems biology, sequence analysis, biostatistics, image analysis, network and graph models, scientific data management and data mining, machine learning, pattern recognition, computational evolutionary biology, computational genomics and proteomics, and related areas.</p>
]]></description>
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