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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28855?offset=1080</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28547/jrf-bioinformatics-at-iit-delhi</guid>
  <pubDate>Mon, 25 Jul 2016 03:26:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at IIT, Delhi]]></title>
  <description><![CDATA[
<p>No. IITD/IRD/RP03017/4254/Advertisement No.: IITD/IRD/093/2016<br />JRF Bioinformatics  job vacancies in Indian Institute of Technology Delhi (IIT Delhi)<br />Title : Elucidation of Pathologically Relevant miRNAs Responsible for Disease Progression and Resistance to Chemotherapy in Chronic Lymphocytic Leukemia (CLL) (RP03017)<br />Qualification : Candidates having first class B. Tech. / M.Sc. Degree or equivalent in Bioinformatics or Biotechnology with NET qualification. Desirable: Candidates having computer programming skills (C++, Python, Java, Web designing using Materialize frameworks, database management, offline software GUI development) with knowledge of Linux server environment and / or experience in next generation sequencing (NGS) data analysis, MD simulations will be preferred.<br />No. of Post : 01<br />Pay Scale : Rs.25,000/-<br />How to apply<br />Walk-in test / interview will be held on 04/08/2016, 03.00 p.m. at Committee Room No. 230, Block-I, Department of Biochemical Engineering &amp; Biotechnology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi-110016.</p>

<p>More at http://ird.iitd.ac.in/sites/default/files/jobs/project/IITD-IRD-093-2016.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28577/research-associate-computer-sciences-recruitment-in-national-bureau-of-plant-genetic-resources</guid>
  <pubDate>Thu, 28 Jul 2016 04:39:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources]]></title>
  <description><![CDATA[
<p>Research Associate (Computer Sciences) recruitment in National Bureau of Plant Genetic Resources</p>

<p>Project: Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND.</p>

<p>Qualification: Ph.D. Degree in Computer Sciences/Bioinformatics OR 1. First class Master’s degree in any discipline of Plant Sciences with specialization in Computer Sciences/ Bioinformatics having 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2. NET qualification is essential for the candidates with 3+2 years B.Sc.+ M.Sc. Desirable: Demonstrated experience &amp; skills in database design, management, UNIX OS, in NGS data analysis. Experience substantiated by publications of high quality will be preferred.</p>

<p>No.of Post: 1</p>

<p>Pay Scale: Rs. 40,000 (Ph.D)/ Rs + 30 % HRA; Rs.38,000 ( Masters Degree 0 + 30 % HRA).</p>

<p>Age Limit : below 40 years for RA position<br />How to apply<br />Applicants for RA post should send their complete CV (Advance copy of the application may be sent by email to :soma.marla@icar.gov.in or ssmarl@yahoo.com, should enclose the copy of the research publications; one page summary of their achievement relevant to the post applied for; and should enclose two reference letters (one must be from the person with whom worked latest). Shortlisted candidate will be intimated for interview by email.</p>

<p>The candidates who wish to attend the walk-in interview are requested to bring with them five copies of the CV (one copy with photograph) as per the format given below. Also, the candidates should bring the original documents such as degree certificates, marks sheets, publications, thesis, experience certificate etc. for verification. </p>

<p>Date of Interview: 17.8.2016.</p>

<p>More at http://www.nbpgr.ernet.in/Downloadfile.aspx?EntryId=7133</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28618/jrf-bioinformatics-at-dpu-india</guid>
  <pubDate>Fri, 05 Aug 2016 03:06:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at DPU, India]]></title>
  <description><![CDATA[
<p>Advertisement for position of “JRF (Junior Research Fellow)” on DST research project “Molecular modeling and docking studies on Deguelin and its derivatives with cell cycle arrest, apoptosis and anti-angiogenesis pathway proteins in cancer cell signaling pathway”</p>

<p>Applications are invited on plain paper from eligible candidates along with biodata and copies of certificates in support of age, qualification and experience for the following position:</p>

<p>Particulars Description</p>

<p>1. Position &amp; No. JRF (Junior Research Fellow) 01</p>

<p>2. Title of the Project Molecular modeling and docking studies on Deguelin and its derivatives with cell cycle arrest, apoptosis and anti-angiogenesis pathway proteins in cancer cell signaling pathway</p>

<p>3. Tenure 3 years</p>

<p>4. Investigator Dr. K. V.Swamy</p>

<p>5. Institute Dr. D. Y. Patil Biotechnology and Bioinformatics Institute, Tathawade, Pune 411033.</p>

<p>5. Qualifications/Eligibility</p>

<p>Essential: NET (National Eligibility Test) qualified M. Sc Bioinformatics/ M. Tech Bioinformatics/M. Sc Biotechnology/M. Tech Biotechnology or Graduate degree in Professional course with NET qualification or Post graduation degree in professional course</p>

<p>The following examinations conducted by various Central Government Departments/Agencies are considered as National Eligibility Test (NET).</p>

<p>1. CSIR-UGC-LS <br />2. GATE (Graduate Aptitude Test in Engineering) <br />3. JAM (Joint Admission Test) <br />4. GPAT (Graduate Pharmacy Aptitude Test) <br />5. BET(Biotechnology Eligibility Test) <br />6. BINC(Bioinformatics National Consortium) <br />7. JEST( Joint Entrance Screening Test) <br />8. JGEEBILS(Joint Graduate Entrance Examination for Biology &amp; Interdisciplinary Life Sciences) <br />9. NBHM Ph.D scholarship Screening Test <br />10. ICMR- JRF Entrance Examination <br />11. AICE (ICAR-All India competitive Examination ) <br />(For all above examinations valid score considered at the time of interview)</p>

<p>Desirable: Knowledge and skills in Bioinformatics tools/ softwares</p>

<p>6. Monthly Emoluments Rs.25,000/ (As per DST-SERB rules)</p>

<p>7. Last date for submission of prescribed application 20/08/2016</p>

<p>Kindly send your applications to “Dr. K. V. Swamy, Asst.Professor, Dr. D. Y. Patil Biotechnology &amp; Bioinformatics Institute, Survey No. 87/88, Mumbai-Pune Express Way, Tathawade, Pune - 411033, Maharashtra, India”. Highlight the envelope with “Application for post of JRF (Junior Research Fellow)”.</p>

<p>Note: No TA/DA will be paid for attending the interview.</p>

<p>Advertisement: http://careers.dpu.edu.in/Biotech.aspx</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/28805/bambus</guid>
	<pubDate>Tue, 16 Aug 2016 08:09:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/28805/bambus</link>
	<title><![CDATA[Bambus]]></title>
	<description><![CDATA[<div>
<div>
<div>
<p>Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</p>
</div>
</div>
</div>
<div>
<div>Home Page:&nbsp;</div>
<div>
<div><a href="http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus2">http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus2</a></div>
</div>
</div><p>Address of the bookmark: <a href="https://www.cbcb.umd.edu/software/bambus2" rel="nofollow">https://www.cbcb.umd.edu/software/bambus2</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</guid>
	<pubDate>Sat, 01 Oct 2016 15:04:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29282/cosmic</link>
	<title><![CDATA[COSMIC]]></title>
	<description><![CDATA[<p>The accurate description and annotation of structural variants can be complex. &nbsp;This is due to the different resolution that variants are reported from traditional&nbsp;cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple&nbsp;rearrangements in a single area of the genome can make cataloguing and interpreting&nbsp;their effects challenging.&nbsp;</p>
<p>The Rearrangement Overview page describes the one or more breakpoints which make up a structural&nbsp;variant. A breakpoint is defined as a region or point where the sample sequence has altered&nbsp;from the reference sequence. Minimum interpretation is made of this data. One variant event&nbsp;can consist of one or multiple breakpoints. The Syntax (shown above the table) gives a detailed description of the variant and its location &nbsp;(e.g. chr11:g.36585230_76606619del, a deletion of&nbsp;roughly 40Mb on chromosome 11). Syntax is based on HGVS mutation nomenclature recommendations&nbsp;[http://www.hgvs.org/rec.html].&nbsp;</p>
<p>http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</p><p>Address of the bookmark: <a href="http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview" rel="nofollow">http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29410/entrez-direct-e-utilities-on-the-unix-command-line</guid>
	<pubDate>Wed, 19 Oct 2016 08:06:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29410/entrez-direct-e-utilities-on-the-unix-command-line</link>
	<title><![CDATA[Entrez Direct: E-utilities on the UNIX Command Line]]></title>
	<description><![CDATA[<p>Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.</p>
<p>EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez.</p><p>Address of the bookmark: <a href="https://www.ncbi.nlm.nih.gov/books/NBK179288/" rel="nofollow">https://www.ncbi.nlm.nih.gov/books/NBK179288/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29576/impute2</guid>
	<pubDate>Thu, 27 Oct 2016 11:21:44 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29576/impute2</link>
	<title><![CDATA[IMPUTE2]]></title>
	<description><![CDATA[<p><strong>IMPUTE2</strong>&nbsp;is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized and powerful options. If you are new to&nbsp;<strong>IMPUTE2</strong>, or indeed to phasing and imputation in general, we suggest that you start by learning the basics.</p>
<p>You should begin by downloading the program from&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#download">here</a>. You will need to choose the link that matches your computing platform and then follow the instructions for opening the download package.</p>
<p>Once you have done this, you will be ready to try some example analyses on the test data that are provided with the download. The section on&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#examples">Examples</a>&nbsp;shows how to use the most common&nbsp;<strong>IMPUTE2</strong>&nbsp;functions. We suggest that you work through these examples and try to understand what the elements of each command are doing. If you don't understand something or would like to know if the program can perform a function that isn't listed, you can read our&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#faq">FAQ</a>&nbsp;or submit a question to our&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#mail_list">mail list</a>.</p>
<p>When you have learned the basic functionality of the program, you can use several features of this website to prepare your own analysis:</p>
<ul>
<li>Learn about&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#best_practices">best practices</a>&nbsp;for imputation.</li>
<li>Download&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference">reference data</a>&nbsp;that you can use to impute genotypes in your study.</li>
<li>Look through a complete list of&nbsp;<a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#options">program options</a>.</li>
</ul><p>Address of the bookmark: <a href="https://mathgen.stats.ox.ac.uk/impute/impute_v2.html" rel="nofollow">https://mathgen.stats.ox.ac.uk/impute/impute_v2.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29603/statistical-for-biological-research</guid>
	<pubDate>Thu, 03 Nov 2016 04:59:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29603/statistical-for-biological-research</link>
	<title><![CDATA[Statistical for biological research]]></title>
	<description><![CDATA[<p>There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late.</p>
<p>This collection highlights important statistical issues that biologists should be aware of and provides practical advice to help them improve the rigor of their work.</p>
<p><em>Nature Methods</em>' <strong><a href="http://www.nature.com/collections/qghhqm/pointsofsignificance">Points of Significance</a></strong> column on statistics explains many key statistical and experimental design concepts. <strong><a href="http://www.nature.com/collections/qghhqm/resources">Other resources</a></strong> include an online plotting tool and links to statistics guides from other publishers.</p><p>Address of the bookmark: <a href="http://www.nature.com/collections/qghhqm" rel="nofollow">http://www.nature.com/collections/qghhqm</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</guid>
	<pubDate>Wed, 09 Nov 2016 16:23:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</link>
	<title><![CDATA[Comparative genomics educational material and papers bookmarks]]></title>
	<description><![CDATA[<p><span>Alignment of the porcine genome against seven other mammalian genomes (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Information</a><span>) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs </span><span>is comparable to the number of bovine-lineage-specific EBRs (100) reported earlier using a slightly lower resolution (500</span><span><span>&thinsp;</span></span><span>kilobases (kb)), indicating that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60</span><span><span>&thinsp;</span></span><span>Myr ago</span><sup><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#ref2" title="Meredith, R. W. et al. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334, 521-524 (2011)">2</a></sup><span>. This rate compares to ~1.9 rearrangements per million years within the primate lineage (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Table 11</a><span>). A total of 20 and 18 cetartiodactyl EBRs (shared by pigs and cattle) were detected using the pig and human genomes as a reference, respectively.</span></p><p>Address of the bookmark: <a href="http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html" rel="nofollow">http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29886/research-officer-at-national-tea-research-foundation</guid>
  <pubDate>Fri, 18 Nov 2016 04:19:24 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Officer at National Tea Research Foundation]]></title>
  <description><![CDATA[
<p>National Tea Research Foundation (NTRF) a registered body, requires qualified and experienced agricultural research scientist for contractual appointment as per details below :</p>

<p>Post Research Officer, NTRF, Kolkata</p>

<p>Essential Post Graduate degree in Life Science having special paper in Bioinformatics. Post Graduate degree in Bioinformatics.</p>

<p>Desirable Ph. D. in the area of computational biology or bioinformatics.</p>

<p>Job Experience Work experience on database development, capable to work independently and efficient in bioinformatics related project.</p>

<p>Job Responsibility</p>

<p>To develop database on various aspects of tea research.</p>

<p>Screening of the In-house projects of NTRF at the preliminary level.</p>

<p>Review and evaluation of In-house projects of NTRF. Technical monitoring of the In-house projects of NTRF.</p>

<p>Reviewing the final technical report of the In-house projects of NTRF.</p>

<p>Putting-up of same proposals for taking approval and sanction of the competent authority.</p>

<p>Physical and technical verification of the In-house projects of NTRF.</p>

<p>To assist in organizing seminars / workshops / meetings etc.</p>

<p>Interested candidate may appear for walk-in Interview on 17 th November, 2016</p>

<p>More Info :</p>

<p>http://www.teaboard.gov.in/pdf/Recruitment_for_the_post_of_Research_Officer_pdf7538.pdf</p>
]]></description>
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