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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28855?offset=1190</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38420/regioner-an-r-package-for-the-management-and-comparison-of-genomic-regions</guid>
	<pubDate>Tue, 11 Dec 2018 08:43:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38420/regioner-an-r-package-for-the-management-and-comparison-of-genomic-regions</link>
	<title><![CDATA[regioneR: an R package for the management and comparison of genomic regions]]></title>
	<description><![CDATA[<p><span>Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and customizable permutation test framework. With it, it's possible to study the association of a set of regions with other sets of regions, functions defined over the genome or essentially any user defined function.</span></p>
<p><span>http://gattaca.imppc.org/regioner/</span></p><p>Address of the bookmark: <a href="http://gattaca.imppc.org/regioner/" rel="nofollow">http://gattaca.imppc.org/regioner/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21435/ra-walk-in-interview-nbfgr-lucknow</guid>
  <pubDate>Tue, 24 Feb 2015 08:23:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA WALK-IN-INTERVIEW @ NBFGR, Lucknow]]></title>
  <description><![CDATA[
<p>F.No. 1(122)/2015-Admn. (CABin Project)<br />Research Associate/Young Professional/SRF Zoology job vacancies in National Bureau of Fish Genetic Resources (NBFGR)<br />Post Name: Research Associate (Computer Science/ Applications)                <br />Qualification: Ph.D. In Computer Science/Computer Applications or equivalent. Or Post-Graduation in Computer Science/ Computer Applications with 1st Division or 60% marks or equivalent overall grade point average with at least two years of research experience. Desirable: 1. Expertise and experience of working/ handling High Performance Computing (H PC) and genomic resource data. 2. Expertise on database management, data mining technologies/ softwares/tools. 3. Published Research papers	<br />No.of Post: 1<br />Pay Scale: Consolidated Rs.24,000/- p.m. + HRA (as admissible) for Ph.D. holders and consolidated `23,000/- + HRA (as admissible) for Master degree holder.	<br />Age:40 years</p>

<p>Young Professional II (Computer Science/Applications)	<br />Master degree in Computer Science/Computer Applications/B.Tech (Computer Science) or equivalent. <br />Desirable: 1. Knowledge of Statistical and Computational Genomics/ Proteomics/ Bioinformatics/Data mining tools. 2. Experience in handling HPC, programming languages and database management packages.	<br />A consolidated salary of Rs.25,000/- per month.	<br />21 to 45 year</p>

<p>Young Professional II (Biotechnology/ Bioinformatics)	<br />Master degree in Bioinformatics/ Biotechnology/ B. Tech(Biotech) or equivalent. Desirable: 1. Knowledge of Computational Genomics/Proteomics/Bioinformatics. 2. Expertise in NGS data analysis and knowledge of allied software and tools.	<br />A consolidated salary of Rs.25,000/- per month.	</p>

<p>Senior Research Fellow	<br />1. Bachelors degree with Zoology, Fisheries and 2. Master's degree in Fishery science/ Zoology with Fisheries/ Biotechnology/ Life Sciences with specialization in Fisheries/ Molecular Biology. 3. 1 st Division or 60% marks or equivalent overall grade point average. <br />Desirable: Work experience in Fisheries, molecular research techniques, bioinformatics and Computer skills. NET qualified <br />Note: The project involves extensive exploration tours and sampling from water bodies all over India	<br />Rs.16,000/- p.m. for 1st &amp; 2nd year and `18,000/- p.m. for 3rd and subsequent years +HRA (as per rules)	35 years for male and 40 years for female candidate</p>

<p>How to apply</p>

<p>A walk-in-interview will be held on 04th March, 2015 at 10:00 hrs at National Bureau of Fish Genetic Resources, Lucknow. Eligible and desirous candidates fulfilling all the requirements may appear for the interview with duly filled in application giving full details of academic records and experience(s) along with attested photocopy as well as original copy of the relevant documents and a passport size photograph on the attached proforma.</p>

<p>http://www.nbfgr.res.in/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39956/alluvial-diagram</guid>
	<pubDate>Sat, 21 Sep 2019 07:31:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39956/alluvial-diagram</link>
	<title><![CDATA[alluvial diagram]]></title>
	<description><![CDATA[<p><span style="color: #000000; font-size: 14px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff; float: none;">Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with blocks on each axis. Observations are represented with<span>&nbsp;</span></span><em style="color: #000000; font-size: 14px; font-weight: 400; text-align: start; background-color: #ffffff;">alluvia</em><span style="color: #000000; font-size: 14px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff; float: none;"><span>&nbsp;</span>(sing. &ldquo;alluvium&rdquo;) spanning across all the axes.</span></p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/alluvial/vignettes/alluvial.html" rel="nofollow">https://cran.r-project.org/web/packages/alluvial/vignettes/alluvial.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21539/research-associate-at-central-potato-research-institute-cpri-shimla-himachal-pradesh</guid>
  <pubDate>Wed, 11 Mar 2015 03:07:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[RESEARCH ASSOCIATE at Central Potato Research Institute (CPRI) - Shimla, Himachal Pradesh]]></title>
  <description><![CDATA[
<p>One post of Research Associate for Project Implementation Unit in the time bound project “XII Plan -–Centre of Agricultural Bio-informatics(CABIN)” are to be filled on purely contractual basis which will be co-terminus with the project as per the details given as under : </p>

<p>No of post : 01 <br />Essential qualifications: i) Ph. D degree in Bioinformatics/computers/Bio-technology. OR ii) Master’s Degree in Bioinformatics/computers/Bio-technology with 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience as evidenced from fellowship/Associateship/training/other engagements. <br />Desirable qualifications: i) Working Knowledge and Published Research papers in Bio-informatics. <br />Monthly emoluments : Rs. 23,000/- + HRA . for M.Sc degree holder Rs. 24,000/- + HRA for Ph.D degree holder <br />Maximum Age limit : Research Associate – Males- 40 years &amp; Women 45 years. <br />SELECTION PROCEDURE FOR CENTRAL POTATO RESEARCH INSTITUTE (CPRI) – RESEARCH ASSOCIATE POST: </p>

<p>Written Test on 20/03/2015. <br />Shortlisted candidates will undertake face to face interview. <br />Dates are yet to be announced for the final selection <br />WALK-IN PROCEDURE FOR RESEARCH ASSOCIATE VACANCY IN CENTRAL POTATO RESEARCH INSTITUTE (CPRI): </p>

<p>Interested/eligible candidates should submit their application along with the attested copies of educational qualification (provisional degree of Masters and Ph.D is mandatory )/experience certificates and one passport size photograph to the Asstt. Admn. Officer(E-I), CPRI, Shimla-171001 at 9.30 AM on the date of interview. The candidates appearing for interview must bring original certificate with them and only those candidates possessing essential qualification as per advertisement will be interviewed. The Director, CPRI, Shimla reserves the right either to fill up the post or cancel the interview without assigning any reasons thereof. Application form is available in the website ( website: http//cpri.ernet.in). No TA/DA will be given by the Institute to the candidates. The Institute is located at Bemloe which is about 2 Kms from Main Bus Stand(Old)/3 Kms. from the Railway Station and about 5 Kms. from ISBT (Tutikandi).</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40721/efs-an-ensemble-feature-selection-tool-implemented-as-r-package-and-web-application</guid>
	<pubDate>Tue, 28 Jan 2020 05:12:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40721/efs-an-ensemble-feature-selection-tool-implemented-as-r-package-and-web-application</link>
	<title><![CDATA[EFS: an ensemble feature selection tool implemented as R-package and web-application]]></title>
	<description><![CDATA[<p><span>The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance. Currently, eight different feature selection methods have been integrated in EFS, which can be used separately or combined in an ensemble.</span></p>
<p><a href="https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0142-8">https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0142-8</a></p><p>Address of the bookmark: <a href="http://efs.heiderlab.de/" rel="nofollow">http://efs.heiderlab.de/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21625/agricul-agricultural-scientists-recruitment-board-tural-scientists-recruitment-board-new-delhi-110-012</guid>
  <pubDate>Wed, 11 Mar 2015 09:18:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[AGRICUL AGRICULTURAL SCIENTISTS RECRUITMENT BOARD TURAL SCIENTISTS RECRUITMENT BOARD NEW DELHI-110 012]]></title>
  <description><![CDATA[
<p>ADVERTISEMENT NO. 01/2015</p>

<p>PRINCIPAL SCIENTIST Pay Band: Minimum pay of `43,000 in the PB-4 of `37400-67000/- + RGP of `10,000/-.</p>

<p>Age: The candidates must not have attained the age of 52 years as on 24.03.2015. There shall be no age limit for the Council’s employees.</p>

<p>ICAR-NATIONAL INSTITUTE OF BIOTIC STRESS MANAGEMENT, RAIPUR (CHHATTISGARH)</p>

<p>57. Principal Scientist (Agricultural Entomology) (Two post)</p>

<p>Qualifications Essential:</p>

<p>(i) Doctoral degree in Agricultural Entomology including relevant basic sciences.</p>

<p>(ii) 10 years experience in the relevant subject out of which at least 8 years should be as Scientist/ Lecturer/Extension Specialist or in an equivalent position in the Pay Band- 3 of `15600-39100 with Grade Pay of `5400/`6000/`7000/`8000 and 2 years as a Senior Scientist or in an equivalent position in the Pay Band- 4 of ` 37400-67000 with Grade Pay of ` 8700/ ` 9000.</p>

<p>(iii) The candidate should have made contribution to research/teaching/extension education as evidenced by published work/innovations and impact.</p>

<p>Desirable:</p>

<p>(i) Experience of using frontiers research tools in management of insect pests of crop plants.</p>

<p>(ii) Evidence of contributions to relevant field through publications/ patents/citation index to suggest a vision/perspective in biotic stress research.</p>

<p>61. Principal Scientist (Bioinformatics) (One post)</p>

<p>Qualifications Essential:</p>

<p>(i) Doctoral degree in Bioinformatics including relevant basic sciences. (ii) &amp; (iii) As in item no. 57 above.</p>

<p>Desirable:</p>

<p>(i) Experience of using bioinformatics for advancement of knowledge and for research on biotic stress management.</p>

<p>(ii) Evidence of contributions to relevant field through publications/patents/citation index to suggest a vision/perspective in biotic stress research.</p>

<p>http://asrb.org.in/administrator/uploads_dir/1424859407english.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41362/genemates-an-r-package-for-detecting-horizontal-gene-co-transfer-between-bacteria-using-gene-gene-associations-controlled-for-population-structure</guid>
	<pubDate>Sat, 07 Mar 2020 05:52:20 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41362/genemates-an-r-package-for-detecting-horizontal-gene-co-transfer-between-bacteria-using-gene-gene-associations-controlled-for-population-structure</link>
	<title><![CDATA[GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure]]></title>
	<description><![CDATA[<p><span>GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where presence-absence status of acquired genes is usually confounded by bacterial population structure due to clonal reproduction.</span></p>
<p><a href="https://www.biorxiv.org/content/10.1101/2020.02.29.970970v1">https://www.biorxiv.org/content/10.1101/2020.02.29.970970v1</a></p><p>Address of the bookmark: <a href="https://github.com/wanyuac/GeneMates" rel="nofollow">https://github.com/wanyuac/GeneMates</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21680/research-associate-at-national-research-centre-on-plant-biotechnology-new-delhi</guid>
  <pubDate>Mon, 16 Mar 2015 03:22:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate at National Research Centre on Plant Biotechnology New Delhi]]></title>
  <description><![CDATA[
<p>Walk-in interview will be held on 24-03-2015 at 10:00 AM at NRCPB, New Delhi for filling Research Associate and Senior Research Fellow positions as mentioned below. The positions are temporary and are initially offered for a period of one year. Details such as emoluments, qualifications, application format etc., are given below. Desirous candidates should report for interview latest by 10:30 AM with the application in the prescribed format, copies and originals of certificates, thesis and documents. No TA/DA will be provided for attending the interview.</p>

<p>ICAR-NPTC: Fibre development in flax/linseed.</p>

<p>(Job # 1) Research Associate (one) (Bioinformatics)</p>

<p>Rs.24000+ 30% HRA) for Ph.D. and for M. Sc Rs.23000/‐ (+ 30% HRA)</p>

<p>Ph.D. Degree in Bioinformatics/Molecular Biology/Biotechnology/ Genetics/allied sciences; or M. Sc in Bioinformatics/ Biotechnology/Life Sciences/ allied sciences with 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2 years research experience in bioinformatic data analysis/molecular biology techniques, and high throughput DNA/RNA sequencing, and transcriptome data analysis. Research paper with IF&gt;1 will be desirable</p>

<p>ICAR-NPTC: Shade avoidance/low-light tolerance in rice.</p>

<p>General Terms &amp; Conditions applicable to all the positions: <br />Age Limit: 35 years max. (5 years relaxation for SC/ST/OBC and woman candidates as per ICAR rules). <br />The positions are purely temporary, on a contractual basis and are initially offered for one year. <br />Originals must be shown for verification. 7. Research experience (Experience certificate from previous employer to be attached): I hereby declare that the information provided above is true to the best of my knowledge. Date: Signature</p>

<p>Advertisement:</p>

<p>www.nrcpb.org/sites/default/files/ICAR-NPTC%20DBT%20RA%20SRF%20interview%2024th%20March.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r</guid>
	<pubDate>Wed, 11 Nov 2020 23:06:03 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r</link>
	<title><![CDATA[CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R]]></title>
	<description><![CDATA[<p>CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolutionary biologists working in the field of comparative genomics.</p><p>Address of the bookmark: <a href="https://gitlab.gwdg.de/mpievolbio-it/crbhits" rel="nofollow">https://gitlab.gwdg.de/mpievolbio-it/crbhits</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21893/postdoctoral-fellowship-in-bioinformatics-and-evolutionary-genomics</guid>
  <pubDate>Wed, 01 Apr 2015 21:36:42 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics<br />Organization<br />National Human Genome Research Institute, National Institutes of Health<br />http://genome.gov/Staff/Baxevanis<br />Job Location<br />Bethesda, MD<br />Job Description</p>

<p>A postdoctoral training position is currently available in the Computational and Statistical Genomics Branch (CSGB) of the National Human Genome Research Institute (NHGRI). The position is located in the laboratory of Andy Baxevanis, Ph.D., whose research group uses comparative genomics approaches to better-understand the molecular innovations that drove the surge of diversity in early animal evolution. The overarching theme of Dr. Baxevanis’ research program is focused on how non-traditional animal models convey critical insights into human disease research.</p>

<p>Candidates should have or be close to obtaining a Ph.D. or equivalent degree in bioinformatics, computational biology, computer science, molecular biology, or a closely related field. Candidates with a background in evolutionary biology are particularly encouraged to apply. Programming skills and experience in the application of computational methods to genomic data are highly desirable. Applicants must possess good communication skills and be fluent in both spoken and written English. The ability to learn how to use new software and quickly become expert in its use, critical thinking, problem-solving abilities, and the ability to work semi-independently are required.<br />How to Apply</p>

<p>Interested applicants should submit a curriculum vitae, a detailed letter of interest, and the names of three potential referees to Dr. Baxevanis at andy@mail.nih.gov.<br />About Our Organization</p>

<p>The NIH Intramural Research Program is on the Bethesda, Maryland campus and offers a wide array of training opportunities for scientists early in their careers. The funding for this position is stable and offers the trainee wide latitude in the design and pursuit of their research project. The successful candidate will have access to NHGRI’s established and robust bioinformatics infrastructure, as well as resources made available through NIH’s Center for Information Technology (CIT) and the National Center for Biotechnology Information (NCBI).</p>

<p>For more information on CSGB and NHGRI’s Intramural Research Program, please see http://genome.gov/DIR/.</p>
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