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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28884?offset=1080</link>
	<atom:link href="https://bioinformaticsonline.com/related/28884?offset=1080" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42402/two-postdoc-positions-to-study-multiscale-genome-evolution-and-cephalopod-gene-regulation-university-of-vienna-austria</guid>
  <pubDate>Thu, 17 Dec 2020 11:45:16 -0600</pubDate>
  <link></link>
  <title><![CDATA[Two postdoc positions to study multiscale genome evolution and cephalopod gene regulation (University of Vienna, Austria)]]></title>
  <description><![CDATA[
<p>Vienna Biocenter are seeking two postdoctoral researchers to join our team and work on the ERC funded project "METASCALE: Modes of genome evolution during major metazoan transitions". The task of both positions will be to study co-evolutionary trends within animal genomes and their association with the emergence of new gene regulation. Our group employs methods of comparative and regulatory genomics to study the regulatory impact of transitions in animal genome architecture. More recently, we have identified a major genome reorganization in the "smart" coleoid cephalopod molluscs (squid, octopus, cuttlefish) that, together with other genomic changes, potentially comprises a unique path or mode of genome evolution among animals. We are thus interested in quantifying these modes of genome evolution across all available animal genomes and to test whether their shifts are associated with the emergence of novel regulation (e.g., in cephalopods). One of our main model species is the Hawaiian bobtail squid species Euprymna scolopes.  The tasks of the two candidates will be complimentary and highly collaborative with one position focusing on comparative genomics analyses across all metazoans and the other position on regulatory genomics in the squid. A solid background in in bioinformatics and comparative genomics is highly desired for the first position, whereas the second position will benefit from experience in molecular and regulatory genomics methods such as HiC, ATAC-seq, RNA-seq or single cell transcriptomics.</p>

<p>The postdocs will join an international group and network of researchers at the University of Vienna studying a diverse range of species and questions in molecular evolution, development, morphology and genomics. Our group is also part of the large evolVienna network of more than 50 evolutionary biology labs in Vienna, across several universities and research institutes. Our Faculty will be relocating to a new campus at the Vienna Biocenter in summer 2021 (https://biologiezentrum.univie.ac.at/en/). Vienna is a vibrant historic European capital with a high QOL. Information about postdoctoral salaries in Austria can be found on this webpage: https://www.fwf.ac.at/en/research-funding/personnel-costs/</p>

<p>Earliest start date will be after July 2021. Initial term of employment is for two years with the possibility of extension. Remote working, at least initially, is a possibility.</p>

<p>Requirements:<br />- PhD degree or equivalent by the start date <br />- Publishing record in peer-reviewed journals or evidence thereof <br />- At least 2 letters of support</p>

<p>Applications including a letter of motivation should be submitted via the Job Center to the University of Vienna (https://personalwesen.univie.ac.at/en/jobs-recruiting/job-center/,<br />job reference number 11615).</p>

<p>Application deadline: January 15th 2021.<br />Application link: https://univis.univie.ac.at/ebewerbung</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43268/kmer-a-suite-of-tools-for-dna-sequence-analysis</guid>
	<pubDate>Wed, 18 Aug 2021 00:02:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43268/kmer-a-suite-of-tools-for-dna-sequence-analysis</link>
	<title><![CDATA[Kmer: a suite of tools for DNA sequence analysis]]></title>
	<description><![CDATA[<p>More at&nbsp;https://help.rc.ufl.edu/doc/Kmer</p>
<p>This also includes:</p>
<ul>
<li>A2Amapper: ATAC, Assembly to Assembly Comparision tool:
<ul>
<li>Comparative mapping between two genome assemblies (same species), or between two different genomes (cross species).</li>
</ul>
</li>
</ul>
<ul>
<li>Sim4db:
<ul>
<li>Spliced alignment of cDNA and genomic sequences, from the same (sim4) or related (sim4cc) species. Optimized for high-throughput batched alignment.</li>
</ul>
</li>
</ul>
<ul>
<li>LEAFF:
<ul>
<li>LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions.</li>
</ul>
</li>
</ul>
<ul>
<li>Meryl:
<ul>
<li>An out-of-core k-mer counter. The amount of sequence that can be processed for any size k depends only on the amount of free disk space.</li>
</ul>
</li>
</ul><p>Address of the bookmark: <a href="https://help.rc.ufl.edu/doc/Kmer" rel="nofollow">https://help.rc.ufl.edu/doc/Kmer</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/42707/bioinformatics-in-africa-part-1</guid>
	<pubDate>Sun, 31 Jan 2021 09:04:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/42707/bioinformatics-in-africa-part-1</link>
	<title><![CDATA[Bioinformatics in Africa:- Part 1]]></title>
	<description><![CDATA[<p>The Institut Pasteur de C&ocirc;te d&rsquo;Ivoire was created by the N&deg;72&shy;511 law of July 27th, 1972 under the Presidency of his Excellency Felix Houphou&euml;t Boigny and Professor Jacques Monod, then Leading of&nbsp;the&nbsp;Pasteur&nbsp;institute&nbsp;of&nbsp;Paris.</p><p>The&nbsp;objectives&nbsp;of&nbsp;the&nbsp;Bioinformatics&nbsp;pole&nbsp;are:</p><p>&bull; Encourage the access to innovations in research and the best exploitation of research data management.</p><p>&bull; Develop&nbsp;the&nbsp;critical&nbsp;spirit&nbsp;of&nbsp;the&nbsp;researchers&nbsp;around&nbsp;their&nbsp;axis&nbsp;of&nbsp;research.</p><p>&bull; Bring an active help to the improvement of the public health while having for constant worries&nbsp;to&nbsp;feed&nbsp;it&nbsp;by&nbsp;research&nbsp;and&nbsp;the&nbsp;innovation.&nbsp;</p><p>&bull; Start&nbsp;training&nbsp;researchers&nbsp;to&nbsp;use&nbsp;bioinformatics&nbsp;as&nbsp;an&nbsp;indispensable&nbsp;tool&nbsp;to&nbsp;research.</p><p>&bull; Encourage interdisciplinary creating a network of scientific information available to the researchers&nbsp;of&nbsp;the&nbsp;institute&nbsp;and&nbsp;partners</p><p>Long&shy;term&nbsp;training&nbsp;activities:</p><p>&bull; To&nbsp;integrate&nbsp;the&nbsp;bioinformatics&nbsp;in&nbsp;the&nbsp;training&nbsp;programs&nbsp;of&nbsp;academic&nbsp;scientists.</p><p>&bull; Development&nbsp;of&nbsp;West&nbsp;Africa&nbsp;Centre&nbsp;training&nbsp;in&nbsp;bioinformatics&nbsp;and&nbsp;genome&nbsp;data&nbsp;analysis.</p><p>Short&shy;term&nbsp;training&nbsp;activities:</p><p>The IPCI will organize in the month of May 2007 a yearly regional course of initiation and using genome data analysis with the participation of the Centre Biotechnologique de Sfax, Tunisia (Pr Ahmed&nbsp;Reba&iuml;,&nbsp;Department&nbsp;of&nbsp;bioinformatics).</p><p>More at&nbsp;https://www.pasteur.ci/</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43902/interactivenn-a-web-based-tool-for-the-analysis-of-sets-through-venn-diagrams</guid>
	<pubDate>Wed, 29 Jun 2022 03:22:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43902/interactivenn-a-web-based-tool-for-the-analysis-of-sets-through-venn-diagrams</link>
	<title><![CDATA[InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams]]></title>
	<description><![CDATA[<p><span>InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets&rsquo; elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains.</span></p>
<p><span>More at&nbsp;https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0611-3</span></p>
<p><span><img src="https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12859-015-0611-3/MediaObjects/12859_2015_611_Fig1_HTML.gif?as=webp" alt="image" style="border: 0px;"></span></p><p>Address of the bookmark: <a href="http://www.interactivenn.net/" rel="nofollow">http://www.interactivenn.net/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/42813/bioinformatics-in-africa-part5-nigeria</guid>
	<pubDate>Sat, 06 Feb 2021 21:13:47 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/42813/bioinformatics-in-africa-part5-nigeria</link>
	<title><![CDATA[Bioinformatics in Africa: Part5 - Nigeria]]></title>
	<description><![CDATA[<p>Covenant University (CU)&shy;Ota:<br />Covenant University (with her enriching and growing state&shy;of&shy;the&shy;art laboratories in the area of &nbsp;science and technology, arts, business and social sciences) is presently the Best University in &nbsp;Nigeria (Private University category), based on the recent over&shy;all rating just concluded by the &nbsp;Nigeria &nbsp; University &nbsp; Commission &nbsp; (NUC). &nbsp; Recently, &nbsp; Covenant &nbsp; University &nbsp; has &nbsp; initiated &nbsp; the &nbsp;establishment of a Centre for Applied Biotech, Bio&shy;Informatics and Microbiology (CBBM) to be &nbsp;situated at the University. The institute has been designed to be a Public&shy;Private Partnership for a productive synergy b/w Academia, Industry and Government. The whole concept is still evolving &nbsp;and more details will be release soon. As regards CBBM, a dedicated computing lab is in plan, but even our computing capacity is &nbsp;presently enormous. In the department of Computer and Information Sciences, we have more than &nbsp;250 Pentium 4 PCs set aside for teaching and research purposes. Furthermore, we have several &nbsp;moderate speed PCs at the Postgraduate research lab and our engineering departments and units. &nbsp;Our wet lab facilities is presently minimal (basic for teaching), the Centre requirement as it touches &nbsp;the wet&shy;laboratories is also set to upgrade this to basic tools expected at an international centre of learning.</p><p>University&nbsp;of&nbsp;Ibadan&nbsp;(UIB)&shy;Ibadan:<br />There&nbsp;has&nbsp;been&nbsp;significant&nbsp;increase&nbsp;in&nbsp;the&nbsp;number&nbsp;of&nbsp;bioinformatics&nbsp;activities&nbsp;in&nbsp;Nigeria&nbsp;(and&nbsp;West Africa)&nbsp;since&nbsp;2003&nbsp;when&nbsp;the&nbsp;program&nbsp;was&nbsp;initiated&nbsp;by&nbsp;the&nbsp;West&nbsp;African&nbsp;Biotechnology&nbsp;Workshops Series&nbsp;(WABWS,&nbsp;http://www.wabw.org)&nbsp;at&nbsp;the&nbsp;University&nbsp;of&nbsp;Ibadan,&nbsp;Nigeria&nbsp;(in&nbsp;collaboration&nbsp;with&nbsp; the&nbsp;South&nbsp;African&nbsp;National&nbsp;Bioinformatics&nbsp;Institute&nbsp;(SANBI,&nbsp;http:/www.sanbi.ac.za).&nbsp;Workshops&nbsp; that&nbsp;were&nbsp;open&nbsp;to&nbsp;scientists&nbsp;from&nbsp;all&nbsp;African&nbsp;countries&nbsp;have&nbsp;seen&nbsp;a&nbsp;very&nbsp;high&nbsp;number&nbsp;of&nbsp;applications&nbsp; from&nbsp;scientists&nbsp;based&nbsp;in&nbsp;West&nbsp;Africa.&nbsp;The&nbsp;encouraging&nbsp;desire&nbsp;to&nbsp;acquire&nbsp;cutting&shy;edge&nbsp;skills&nbsp;to&nbsp; computational&nbsp;process&nbsp;data&nbsp;and&nbsp;extract&nbsp;useful&nbsp;knowledge&nbsp;from&nbsp;genome&nbsp;projects&nbsp;led&nbsp;to&nbsp;the&nbsp;interest&nbsp;of&nbsp; the&nbsp;West&nbsp;African&nbsp;Biotechnology&nbsp;Workshops&nbsp;(WABW)&nbsp;to&nbsp;develop&nbsp;an&nbsp;agenda&nbsp;to&nbsp;address&nbsp;the&nbsp; bioinformatics&nbsp;skills&nbsp;gap&nbsp;among&nbsp;scientists&nbsp;in&nbsp;West&nbsp;Africa.&nbsp;An&nbsp;increased&nbsp;commitment&nbsp;from&nbsp;agencies&nbsp; like&nbsp;NEPAD&nbsp;would&nbsp;be&nbsp;required&nbsp;in&nbsp;the&nbsp;provision&nbsp;of&nbsp;infrastructure&nbsp;to&nbsp;establish&nbsp;and&nbsp;sustain&nbsp;regional&nbsp; and&nbsp;national&nbsp;networks.</p><p>University&nbsp;of&nbsp;Ilorin&nbsp;(UIL)&shy;Ilorin:<br />The&nbsp;University&nbsp;of&nbsp;Ilorin&nbsp;was&nbsp;established&nbsp;in&nbsp;1976&nbsp;by&nbsp;the&nbsp;Federal&nbsp;Government&nbsp;of&nbsp;Nigeria.&nbsp; Bioinformatics&nbsp;activities&nbsp;started&nbsp;at&nbsp;the&nbsp;University&nbsp;in&nbsp;February&nbsp;2003&nbsp;with&nbsp;the&nbsp;establishment&nbsp;of&nbsp;the&nbsp; West&nbsp;African&nbsp;Bioinformatics&nbsp;Research&nbsp;Initiative&nbsp;(WABRI).&nbsp;However,&nbsp;progress&nbsp;has&nbsp;been&nbsp;rather&nbsp;slow&nbsp; due&nbsp;to&nbsp;inadequate&nbsp;funding.&nbsp;We&nbsp;are&nbsp;mainly&nbsp;engaged&nbsp;in&nbsp;Bioinformatics&nbsp;training&nbsp;at&nbsp;the&nbsp;introductory&nbsp; level&nbsp;and&nbsp;proteomics&nbsp;studies&nbsp;on&nbsp;various&nbsp;species&nbsp;of&nbsp;malaria&nbsp;parasites.&nbsp;Recently,&nbsp;we&nbsp;became&nbsp;interested&nbsp; in&nbsp;comparative&nbsp;genome&nbsp;analysis&nbsp;of&nbsp;various&nbsp;species&nbsp;of &nbsp;Plasmodium&nbsp; and&nbsp;the&nbsp;comparison&nbsp;of&nbsp; chloroquine&nbsp;sensitive&nbsp;and&nbsp;chloroquine&nbsp;resistant&nbsp;strains&nbsp;of&nbsp;Plasmodium&nbsp;falciparum.&nbsp;Other&nbsp;activities&nbsp; and&nbsp;areas&nbsp;of&nbsp;interest&nbsp;can&nbsp;be&nbsp;seen&nbsp;on&nbsp;our&nbsp;website,&nbsp;http://www.wabri.org,&nbsp;although&nbsp;not&nbsp;all&nbsp;our&nbsp; proposed&nbsp;interests&nbsp;have&nbsp;been&nbsp;fully&nbsp;implemented&nbsp;due&nbsp;to&nbsp;our&nbsp;level&nbsp;of&nbsp;funding.</p><p>Training:<br />The&nbsp;University&nbsp;of&nbsp;Ilorin&nbsp;has&nbsp;introduced&nbsp;M.Sc.&nbsp;and&nbsp;Ph.D.&nbsp;programmes&nbsp;in&nbsp;Computer&nbsp;Science&nbsp;(with&nbsp; options&nbsp;in&nbsp;Bioinformatics).&nbsp;The&nbsp;programme&nbsp;is&nbsp;based&nbsp;in&nbsp;the&nbsp;Department&nbsp;of&nbsp;Computer&nbsp;Science&nbsp;and&nbsp; emphasis&nbsp;is&nbsp;on&nbsp;the&nbsp;development&nbsp;of&nbsp;algorithms&nbsp;to&nbsp;solve&nbsp;problems&nbsp;in&nbsp;bioinformatics. The&nbsp;Covenant&nbsp;University&nbsp;offers&nbsp;M.Sc.&nbsp;and&nbsp;Ph.D&nbsp;in&nbsp;Computer&nbsp;Science&nbsp;with&nbsp;option&nbsp;in&nbsp;Bioinformatics&nbsp; (Computational&nbsp;Biology).&nbsp;Furthermore,&nbsp;through&nbsp;affiliated&nbsp;departments,&nbsp;the&nbsp;CBBM&nbsp;is&nbsp;been&nbsp;design&nbsp;to&nbsp;award&nbsp;Diploma&nbsp;and&nbsp;Degree&nbsp;certificates&nbsp;in&nbsp;Biotechnology.</p><p>Web&nbsp;sites&nbsp;and&nbsp;links: http://www.covenantuniversity.com http://www.run.edu.ng http://www.uniben.edu http://www.wabri.org http://www.wabw.org http://www.unilorin.edu.ng http://www.wabri.org http://www.asopah.org</p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42953/ra-bioinformatics-at-sir-ganga-ram-hospital-new-delhi</guid>
  <pubDate>Sun, 14 Mar 2021 10:40:18 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Sir Ganga Ram Hospital, New Delhi]]></title>
  <description><![CDATA[
<p>Opportunities available at Institute of Medical Genetics &amp; Genomics, Sir Ganga Ram Hospital, New Delhi.</p>

<p>1) Senior Research Fellow under ICMR Project: M.Sc. (Life Sciences) with 2 years of experience (preferable in the field of Bioinformatics) or MBBS Degree.</p>

<p>2) Research Associate under ICMR Project: . Ph.D.(Life Science/Biotechnology/Bioinformatics) or equivalent degree or having 3 years of research, teaching and design and development experience after M.Tech with at least one research paper in science Citation Indexed (SCI) Journal.<br />Work experience in the area of Human genomics/Next Generation Sequencing data analysis/Big data genomics would be preferred.<br />Application link:</p>

<p>https://sgrh.com/joblist</p>

<p>Post Code: 2023, 2024</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38762/katuali-is-a-flexible-consensus-pipeline-implemented-in-snakemake-to-basecall-assemble-and-polish-oxford-nanopore-technologies-sequencing-data</guid>
	<pubDate>Tue, 22 Jan 2019 06:26:55 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38762/katuali-is-a-flexible-consensus-pipeline-implemented-in-snakemake-to-basecall-assemble-and-polish-oxford-nanopore-technologies-sequencing-data</link>
	<title><![CDATA[Katuali is a flexible consensus pipeline implemented in Snakemake to basecall, assemble, and polish Oxford Nanopore Technologies&#039; sequencing data]]></title>
	<description><![CDATA[<ul>
<li>Run a pipeline processing fast5s to a consensus in a single command.</li>
<li>Recommended fixed "standard" and "fast" pipelines.</li>
<li>Interchange basecaller, assembler, and consensus components of the pipelines simply by changing the target filepath.</li>
<li>Seemless distribution of tasks over local or distributed compute.</li>
<li>Highly configurable.</li>
<li>Open source (Mozilla Public License 2.0).</li>
</ul>
<p>Documentation can be found at&nbsp;<a href="https://nanoporetech.github.io/katuali/">https://nanoporetech.github.io/katuali/</a>.</p><p>Address of the bookmark: <a href="https://github.com/nanoporetech/katuali" rel="nofollow">https://github.com/nanoporetech/katuali</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/43341/nigerian-bioinformatics-and-genomics-network-nbgn</guid>
  <pubDate>Tue, 31 Aug 2021 08:29:40 -0500</pubDate>
  <link></link>
  <title><![CDATA[Nigerian Bioinformatics and Genomics Network (NBGN)]]></title>
  <description><![CDATA[
<p>This is to announce the second official conference of the Nigerian Bioinformatics and Genomics Network (NBGN). October 11-13,2021 at Landmark University, Omu-Aran, Kwara State and Zoom ( conference link to be announced soon</p>

<p>#NBGN21</p>

<p>www.nbgn21conference.com</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/view/138</guid>
	<pubDate>Wed, 10 Jul 2013 16:30:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/138</link>
	<title><![CDATA[Selecting between Python 2 and Python 3?]]></title>
	<description><![CDATA[<p>Which version is best for bioinformatician to work on?</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/841/research-fellow</guid>
  <pubDate>Sat, 13 Jul 2013 11:23:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF CALCUTTA</p>

<p>A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophysics, Molecular Biology and Bioinformatics, 92 A.P.C Road, Kolkata-700 009 to select one trainee research fellow and two students under DIC. The positions are purely temporary and would be for a period of six months from the date of joining which may be extended by another six months subject to successful performance.</p>

<p>Qualification:</p>

<p>For the Trainee Research Fellow: Should have a master degree in Bioinformatics or allied subjects and should have biological database development experience. Must have at least one publication.</p>

<p>For the Students: Should have a master degree in Bioinformatics or allied subjects and should be proficient in C-programming language. Must be familiar with techniques of Developmental Biology.</p>

<p>The Trainee Research Fellow would be paid a consolidated sum of Rs 10000/- per month and the students would be paid a sum amount Rs. 7000/- per month during the tenure of the project.</p>

<p>Advertisement:<br />www.caluniv.ac.in/News%20&amp;%20Announcement/trainee_rf_DIC.pdf</p>
]]></description>
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