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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28903?offset=1280</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/7813/research-associate-indian-institute-of-spices-research</guid>
  <pubDate>Wed, 08 Jan 2014 10:10:03 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH]]></title>
  <description><![CDATA[
<p>INDIAN INSTITUTE OF SPICES RESEARCH<br />(Indian Council of Agricultural Research)<br />Marikunnu P.O., Kozhikode – 673 012, Kerala</p>

<p>Phone No. 0495 2731 410</p>

<p>WALK -IN- TEST CUM INTERVIEW<br />Walk- in- Test cum Interview (based on test) for the selection of Research Associate (Bioinformatics) &amp; Bioinformatic Trainees under the scheme ‘Distributed Information Sub Centre- DISC’ will be held at this Institute as per details indicated below.</p>

<p>Research Associate<br />Date of Interview : 21 -01-2014 at 10.00 A.M<br />Qualifications :<br />a) Essential: Doctorate degree in Bioinformatics or Biotechnology/Life Sciences/Biochemistry with expertise in  Bioinformatics as evidenced by publications.<br />OR Three years research experience after  MVSc/MPharm/ME/MTech with Bioinformatics Specialization.<br />b Desirable: Experience in handling NGS data  Programming skills in Python/Bioperl<br />Emoluments : Rs:22000/- per month + HRA  (higher pay upto Rs.24000/- can be paid depending on the qualifications and experience.<br />Upper age limit : 40 years for Men &amp; 45 years for Women as on date of Interview (Upper Age limits are relaxable for SC, ST and OBC candidates as per Govt. of India norms (at present 5 years for SC/ST and 3 years for OBC)<br />Duration of Project : Till the closure of the project.</p>

<p>General Terms and conditions<br />1. The above positions are purely on temporary basis and is co-terminus with the closure of the project. There is no provision of re-employment after termination of project.<br />The selected candidate will not have any right for claiming pay scale or absorption<br />against any regular post being vacant on a later date at this Institute.<br />2 . No TA/DA will be paid for attending the Interview.<br />3. Canvassing in any form will lead to cancellation of candidate.<br />4. The decision of Director, IISR would be final and binding in all aspects.<br />5. Candidates will not be permitted to enter the Examination Hall after 10.00 A.M.<br />6. Candidates who secure the minimum marks prescribed by the Institute in written test  only will be eligible for calling for the interview. The number of candidates to be  called for the interview will be decided by the Director of the Institute.<br />7 Those who do not possess original Degree/PG certificate or Provisional certificate will not be allowed to attend the Test/Interview.</p>

<p>Note: All relevant certificates (in original) and bio data, No objection certificate in case he/she is employed elsewhere and experience certificate in original (if any) need to be produced at the time of interview.<br />Advertisement: http://spicebioinfo.res.in/downloads/DISC-Website.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1973/webinar-wednesday-21-august-2013-at-noon-edt</guid>
	<pubDate>Sun, 11 Aug 2013 19:31:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1973/webinar-wednesday-21-august-2013-at-noon-edt</link>
	<title><![CDATA[Webinar: Wednesday 21 August 2013 at Noon EDT]]></title>
	<description><![CDATA[<p>This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowledge is sufficient to support critical end-point objectives such as map-based cloning and marker-assisted breeding.</p><p>http://www.extension.org/pages/67926/upcoming-webinar:-selective-sequencing-through-combinatorial-pooling#.UggsVuHyPqU</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/4947/experimental-scientific-officer-bioinformatics</guid>
  <pubDate>Fri, 27 Sep 2013 11:09:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Experimental Scientific Officer (Bioinformatics)]]></title>
  <description><![CDATA[
<p>Closing Date:  8 October 2013</p>

<p>Salary:   £27,854 - £29,541, with progression to £36,298</p>

<p>You will perform cutting edge computational biology within the Faculty of Medical Sciences, with a particular focus on the Northern Institute for Cancer Research (NICR), and contribute to the delivery of Faculty wide programmes of training, analytical services and skill transfer between Faculty Institutes.</p>

<p>You will have a relevant first degree or equivalent qualifications and/or experience in a relevant scientific/technical role, together with previous specialist experience at a senior level in bioinformatics. A PhD is desirable.</p>

<p>This position is part of the Bioinformatics Support Unit but physically located for the majority of the time in the NICR buildings.</p>

<p>Tenable for three years.</p>

<p>Informal enquiries to unit head Dr Simon Cockell: 0191 222 7253; simon.cockell@ncl.ac.uk</p>

<p>For more information visit @ https://www15.i-grasp.com/fe/tpl_newcastle02.asp?s=4A515F4E5A565B1A&amp;jobid=50667,2552984041&amp;key=70203469&amp;c=725434237887&amp;pagestamp=sepghtjhowdqpsxuyn</p>

<p>You can also find several other jobs @http://bsu.ncl.ac.uk/support/recruitment/</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/26234/manolis-kellis-lab</guid>
  <pubDate>Sun, 31 Jan 2016 20:51:06 -0600</pubDate>
  <link></link>
  <title><![CDATA[Manolis Kellis Lab]]></title>
  <description><![CDATA[
<p>A major focus of our lab is understanding the effects of genetic variation on molecular phenotypes and human disease. We develop methods for integrating diverse functional genomic datasets of transcription, chromatin modifications, regulator binding, and their changes across multiple conditions to interpret genetic associations, identify causal variants, and predict the effects of genetic perturbations.</p>

<p>More at http://compbio.mit.edu</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5220/paolo-ruggerone-lab</guid>
  <pubDate>Tue, 01 Oct 2013 14:15:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Paolo Ruggerone Lab]]></title>
  <description><![CDATA[
<p>Efflux pumps (RND family)</p>

<p>Functioning of efflux systems in Gram-negative bacteria<br />Determinants of the compound-efflux system interactions<br />Action of inhibitors on efflux systems<br />Structural and dynamical features of the efflux systems</p>

<p>TatA<br />Assembly of the TatA system<br />Study of the dynamical features of the charge zipper</p>

<p>Methods<br />Setup of a kinetic Monte Carlo (KMC) scheme to study the flux of antibiotics through porins and efflux systems<br />Setup of protocol to integrate MD results in a ligand-based approach</p>

<p>Viral inhibitors<br />Interactions of selected compounds with RNA-dependent RNA polymerases (RdRps) of HCV and BVDV<br />Assessment of the role of mutations in RdRps<br />Antimicrobial peptides</p>

<p>Interactions of antimicrobial peptides with membranes: structure and dynamics<br />Interactions between antimicrobial peptides in the presence of different membranes<br />Protein-protein interactions<br />Effects of mutations</p>

<p>Lab Page<br />http://www.dsf.unica.it/~paolo/Site/Home.html</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35907/alienness-rapid-detection-of-candidate-horizontal-gene-transfers-across-the-tree-of-life</guid>
	<pubDate>Mon, 12 Mar 2018 09:24:40 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35907/alienness-rapid-detection-of-candidate-horizontal-gene-transfers-across-the-tree-of-life</link>
	<title><![CDATA[alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life]]></title>
	<description><![CDATA[<p><span>Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Metazoa. Here, we propose Alienness, a taxonomy-aware web application available at&nbsp;</span>http://alienness.sophia.inra.fr</p>
<p>http://www.mdpi.com/2073-4425/8/10/248</p><p>Address of the bookmark: <a href="http://alienness.sophia.inra.fr/cgi/index.cgi" rel="nofollow">http://alienness.sophia.inra.fr/cgi/index.cgi</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5310/bergman-lab</guid>
  <pubDate>Thu, 03 Oct 2013 17:20:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bergman Lab]]></title>
  <description><![CDATA[
<p>Broad area of research:</p>

<p>Genome Annotation and Functional Genomics</p>

<p>Bergman Lab is actively engaged in the development and application of computational methods to improve the annotation of functional biological features in genome sequences.  Bergman Lab work focuses on improving annotation of non-protein-coding regions of the genome including conserved noncoding sequences (CNSs), cis-regulatory modules (CRMs), transcription factor binding sites (TFBSs), transposable elements (TEs) and noncoding RNA (ncRNA) genes. Current projects include improving the (i) annotation of TEs in the fly and yeast genomes, (ii) annotation of CRMs and TFBSs in the fly genome, and (iii) analysis of transposon knockout collections in flies. Research in this area is supported by the EC FP7 programme.</p>

<p>Genome and Molecular Evolution<br />Text and Data Mining</p>

<p>More @ http://bergmanlab.smith.man.ac.uk/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38661/gene-ontology-consortium</guid>
	<pubDate>Fri, 11 Jan 2019 05:51:02 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38661/gene-ontology-consortium</link>
	<title><![CDATA[Gene Ontology Consortium]]></title>
	<description><![CDATA[<p>The GO knowledgebase is composed of two primary components:</p>
<ul>
<li>the&nbsp;<strong><a href="http://geneontology.org/page/ontology-documentation">Gene Ontology (GO)</a></strong>, which provides the logical structure of the biological functions (&lsquo;terms&rsquo;) and their relationships to one another, manifested as a directed acyclic graph</li>
<li>the corpus of&nbsp;<strong><a href="http://geneontology.org/page/go-annotations">GO annotations</a></strong>, evidence-based statements relating a specific gene product (a protein, non-coding RNA, or macromolecular complex, which we often refer to as &lsquo;genes&rsquo; for simplicity) to a specific ontology term</li>
</ul>
<p>Together, the ontology and annotations aim to describe a comprehensive model of biological systems. Currently, the GO knowledgebase includes experimental findings from over&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=loprovGeneOntol[SB]">140 000 published papers</a>, represented as over 600 000 experimentally-supported GO annotations. These provide the core dataset for additional inference of over 6 million functional annotations for a diverse set of organisms spanning the tree of life.</p>
<p>In addition to this core knowledgebase, GOC resources also include software to edit and perform logical reasoning over the ontologies, web access to the ontology and annotations, and analytical tools that use the GO knowledgebase to support biomedical research.</p><p>Address of the bookmark: <a href="http://www.geneontology.org/" rel="nofollow">http://www.geneontology.org/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/5436/the-anatomy-of-successful-computational-biology-software</guid>
	<pubDate>Thu, 10 Oct 2013 11:53:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/5436/the-anatomy-of-successful-computational-biology-software</link>
	<title><![CDATA[The anatomy of successful computational biology software]]></title>
	<description><![CDATA[<p>Creators of software widely used in computational biology discuss the factors that contributed to their success</p><p><em>Nature Biotechnology</em><span>&nbsp;spoke with Altschul and several other originators of computational biology software programs widely used today (</span><a href="http://www.nature.com/nbt/journal/v31/n10/full/nbt.2721.html#t1">Table 1</a><span>). The conversations explored what makes certain software tools successful, the unique challenges of developing them for biological research and how the field of computational biology, as a whole, can move research agendas forward. What follows is an edited compilation of interviews.</span></p><p>Detail @&nbsp;<a href="http://www.nature.com/nbt/journal/v31/n10/full/nbt.2721.html">http://www.nature.com/nbt/journal/v31/n10/full/nbt.2721.html</a></p><p>News Source @ Nature</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42204/g-nest-the-gene-neighborhood-scoring-tool</guid>
	<pubDate>Fri, 25 Sep 2020 20:09:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42204/g-nest-the-gene-neighborhood-scoring-tool</link>
	<title><![CDATA[G-NEST: The Gene NEighborhood Scoring Tool]]></title>
	<description><![CDATA[<p><span>The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.</span></p><p>Address of the bookmark: <a href="https://github.com/dglemay/G-NEST" rel="nofollow">https://github.com/dglemay/G-NEST</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

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