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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28915?offset=1220</link>
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	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44908/top-journals-in-bioinformatics-how-to-choose-where-to-publish-why-it-matters</guid>
	<pubDate>Fri, 26 Sep 2025 06:49:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44908/top-journals-in-bioinformatics-how-to-choose-where-to-publish-why-it-matters</link>
	<title><![CDATA[Top Journals in Bioinformatics: How to Choose Where to Publish &amp; Why It Matters]]></title>
	<description><![CDATA[<div><p>Bioinformatics is a rapidly growing field at the intersection of biology, computer science, mathematics, and statistics. As data volumes increase, as well as the diversity of data types (genomics, proteomics, metabolomics, imaging, single‑cell data, etc.), the need for robust computational methods, rigorous models, and reproducible tools has never been greater.</p></div><p><br /> A key decision for researchers is: Where should I publish my work? The choice of journal impacts visibility, peer recognition, and long‑term influence of your research. Below I provide a guide to leading journals in bioinformatics, criteria for selecting the journal that best fits your work, and why these considerations matter.</p><p><strong>Leading Journals in Bioinformatics</strong></p><table border="0" cellspacing="0" cellpadding="0">
<tbody>
<tr>
<td valign="top">
<p>Journal</p>
</td>
<td valign="top">
<p>What it&rsquo;s Known For / Strengths</p>
</td>
<td valign="top">
<p>Best Fit for What Kind of Work</p>
</td>
</tr>
<tr>
<td valign="top">
<p>Bioinformatics (Oxford Journals)</p>
</td>
<td valign="top">
<p>Strong for methods, computational biology, database papers, algorithm development.</p>
</td>
<td valign="top">
<p>New computational methods; tools with broad applicability; databases; methodological advances.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>Briefings in Bioinformatics</p>
</td>
<td valign="top">
<p>High impact reviews, overviews, and synthesis articles.</p>
</td>
<td valign="top">
<p>Review‑style articles; comparative studies; widely used tools.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>PLOS Computational Biology</p>
</td>
<td valign="top">
<p>Emphasis on method development plus biological insight; open access.</p>
</td>
<td valign="top">
<p>Interdisciplinary work; computational method with biological applications.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>BMC Bioinformatics</p>
</td>
<td valign="top">
<p>Broad scope; good for software, pipelines, resources; open access.</p>
</td>
<td valign="top">
<p>Software development; pipelines; data resources; benchmarking.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>IEEE Transactions on Computational Biology and Bioinformatics (TCBB)</p>
</td>
<td valign="top">
<p>Rigor in computation, algorithms, performance.</p>
</td>
<td valign="top">
<p>Algorithmic innovations; statistical/computational method work.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>BioData Mining</p>
</td>
<td valign="top">
<p>Focused on data mining / ML in biology.</p>
</td>
<td valign="top">
<p>Machine learning / AI applied to biological datasets; predictive models.</p>
</td>
</tr>
</tbody>
</table><p><strong>Criteria to Use When Choosing a Journal</strong></p><ul>
<li>Scope &amp; Audience</li>
<li>Impact &amp; Visibility</li>
<li>Review Time &amp; Speed</li>
<li>Open Access</li>
<li>Cost / APCs</li>
<li>Reputation vs Practical Fit</li>
<li>Reproducibility, Data &amp; Code Sharing Policies</li>
<li>Indexing &amp; Reach</li>
<li>Quality of the field</li>
<li>Accelerating discovery</li>
<li>Fair access</li>
<li>Credibility &amp; trust</li>
<li>Read recent papers in the journal</li>
<li>Tailor the manuscript</li>
<li>Check the author guidelines</li>
<li>Have backup journals ready</li>
<li>More emphasis on machine learning / AI</li>
<li>Single‑cell, spatial omics, multimodal data</li>
<li>Cloud workflows, reproducible pipelines</li>
<li>Preprints / open peer review</li>
<li>Alternative metrics (software use, downloads, community adoption)</li>
</ul><p>Selecting where to publish in bioinformatics isn&rsquo;t just about prestige; it&rsquo;s about reaching the right audience, ensuring your work is usable, and contributing to the field responsibly.</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/45115/postdoctoral-fellow-in-genomics-and-comparative-genomics</guid>
  <pubDate>Thu, 09 Apr 2026 02:12:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellow in Genomics and Comparative Genomics]]></title>
  <description><![CDATA[
<p>Environnement de travail (Work environment):<br />The successful candidate will join a dynamic research group working<br />on the ecology and evolution of host'parasite'environment<br />interactions in non-model organisms, particularly snail vectors and<br />its trematode parasites. She/He will conduct genomic analyses aimed at<br />understanding host'parasite coevolution and the genetic architecture<br />of resistance in the invasive snail Pseudosuccinea columella to the<br />zoonotic parasite Fasciola hepatica. This thematic line is embedded<br />within the regional scientific project InvaSnail financed by the<br />ExposUM initiative from the Montpellier. The position is based in<br />Montpellier, a vibrant scientific hub in Southern France internationally<br />recognized for excellence in ecology and evolutionary biology. The IHPE<br />laboratory provides a collaborative research environment with access<br />to high-performance computing facilities, sequencing platforms, and<br />strong interdisciplinary interactions across research institutions in<br />the Montpellier area. University</p>

<p>Main mission:</p>

<p>Develop and implement strategies for whole-genome sequencing of non-model<br />species<br />Generate high-quality de novo genome assemblies using short- and long-read<br />sequencing technologies<br />Perform genome annotation and structural/functional characterization<br />Conduct comparative genomic analyses across related species or populations<br />Design and implement genome-wide association studies (GWAS) to identify<br />loci associated with phenotypic or adaptive traits<br />Integrate genomic, phenotypic, and environmental datasets<br />Contribute to the development of reproducible bioinformatics pipelines</p>

<p>ActivitÃ©s (Activities):</p>

<p>Lead the genomic component of the research project<br />High-molecular-weight DNA extraction optimization<br />Long-read genome assembly (PacBio HiFi / ONT)<br />Genome polishing and quality assessment (BUSCO, QUAST)<br />Structural and functional annotation<br />Variant discovery (SNPs, indels, SVs)<br />Population genomic analyses (FST, demographic inference)<br />Mixed-model GWAS accounting for structure<br />Workflow development (Snakemake/Nextflow)<br />HPC-based pipeline implementation<br />Publish results in peer-reviewed journals<br />Present findings at international conferences<br />Collaborate with experimental and computational team members<br />Contribute to project development<br />Mentor graduate students when appropriate</p>

<p>More at https://evol.mcmaster.ca/brian/evoldir/PostDocs//MontpellierU.ComparativeGenomics</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/1469/prime-minister%E2%80%99s-100k-genome-project</guid>
	<pubDate>Thu, 08 Aug 2013 09:40:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/1469/prime-minister%E2%80%99s-100k-genome-project</link>
	<title><![CDATA[Prime Minister’s 100k Genome Project]]></title>
	<description><![CDATA[<p>Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England.&nbsp; A landmark project by british government.</p><p>Genomics England will play a key role in building on the UK&rsquo;s long track record as leader in medical science advances to push the boundaries by unlocking the power of DNA data. The UK will become the first ever country to introduce this technology in its mainstream health system &ndash; leading the global race for better tests, better drugs and above all better, more personalised care.</p><p>http://www.genomicsengland.co.uk/100k-genome-project/</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1491/2013-nextgen-genomics-bioinformatics-technologies-ngbt-conference-new-delhi-india</guid>
  <pubDate>Thu, 08 Aug 2013 16:21:16 -0500</pubDate>
  <link></link>
  <title><![CDATA[2013 NextGen Genomics &amp; Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA]]></title>
  <description><![CDATA[
<p>2013 NextGen Genomics &amp; Bioinformatics Technologies (NGBT) Conference</p>

<p>SciGenom Research Foundation (SGRF) and Institute of Genomics and Integrative Biology (IGIB) are pleased to host the Next-Generation Sequencing and Bioinformatics for Genomics &amp; Healthcare conference.</p>

<p>In the ten years since the first human reference genome was completed for US$3 billion the sequencing technologies have radically changed leading to great reduction in sequencing cost. Today a human genome can be sequenced for under US$ 5000 in less than two weeks. It is expected that by the end of 2015 the cost of sequencing a human genome will drop to below thousand dollars. The next generation sequencing technologies over the past five years have enabled a large number of genomic studies that impact human health and disease. Also, this has made possible the growth of microbial, animal and plant genomics studies. While the data production has increased at a rapid pace challenges remain in analyzing and understanding the data. The conference will cover the next generation sequencing (NGS) technologies, bioinformatics for NGS and applications of NGS in many areas including personalized medicine.</p>

<p>For more info : http://www.scigenomconferences.com/2013/default.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/3889/bioinformatics-and-sequencing-courses-and-workshops</guid>
	<pubDate>Sat, 24 Aug 2013 16:41:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/3889/bioinformatics-and-sequencing-courses-and-workshops</link>
	<title><![CDATA[Bioinformatics and Sequencing Courses and Workshops]]></title>
	<description><![CDATA[<p>Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wide range of topics:</p><p><a href="http://www.isb-sib.ch/education/training-courses.html">http://www.isb-sib.ch/education/training-courses.html</a></p><p>Canadian bioinformatics also organises various bioinformatics and sequencing courses:</p><p><a href="http://bioinformatics.ca/workshops">http://bioinformatics.ca/workshops</a></p><p>In addition to above two, EMBI&nbsp;Europe, EMBO Europe, Cold Spring Harbour USA, Wellcome Trust UK and NOVA&nbsp;Europe&nbsp;also organise bioinformatics and sequencing courses annually:</p><p><a href="http://www.embl.de/training/events/index.php?p_outstation=ALL">http://www.embl.de/training/events/index.php?p_outstation=ALL</a></p><p><a href="http://www.embo.org/funding-awards/courses-workshops">http://www.embo.org/funding-awards/courses-workshops</a></p><p><a href="http://meetings.cshl.edu/courses.html">http://meetings.cshl.edu/courses.html</a></p><p><a href="http://www.wellcome.ac.uk/Education-resources/Courses-and-conferences/Advanced-Courses-and-Scientific-Conferences/Advanced-Courses/index.htm">http://www.wellcome.ac.uk/Education-resources/Courses-and-conferences/Advanced-Courses-and-Scientific-Conferences/Advanced-Courses/index.htm</a></p><p><a href="http://www.nova-university.org/pagetop.cfm?MenySidorTop_id=2&amp;open=7">http://www.nova-university.org/pagetop.cfm?MenySidorTop_id=2&amp;open=7</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/1720/postdoctoral-associate-bioinformatics-at-duke-university-medical-center</guid>
  <pubDate>Sat, 10 Aug 2013 18:38:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Associate - Bioinformatics  at Duke University Medical Center]]></title>
  <description><![CDATA[
<p>The Department of Biostatistics and Bioinformatics at Duke University Medical Center is seeking a Postdoctoral Associate for a one year appointment to work on several high-dimensional research projects. The specific goals of the project are to identify genes or molecular markers that are predictive of clinical outcomes in renal and prostate cancer.</p>

<p>Candidates must have: a PhD degree in statistics, biostatistics or bioinformatics, extensive experience in analyzing high-dimensional data (microarray, SNP, CNVs) and of validation approaches. In addition, experience in penalized regression methods, data base manipulation; and strong programming skills in order to conduct Monte Carlo studies and applications (R). Candidate must have excellent communication skills (verbal, written and presentation), a strong proficiency in Linux system.</p>

<p>This position is available immediately and will be filled as soon as possible. Appointment could be extended beyond the first year based on additional funding.</p>

<p>For more information about the Department of Biostatistics and Bioinformatics, please visit our website: http://www.biostat.duke.edu.</p>

<p>For more info: http://biostat.duke.edu/sites/biostat.duke.edu/files/Halabi%20-%20Postdoc%20Job%20Posting%202013%20updated.pdf</p>

<p>Duke University is an Equal Opportunity/Affirmative Action Employer.</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4210/uni-computing-bergen-norway</guid>
  <pubDate>Tue, 03 Sep 2013 18:40:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[Uni Computing Bergen Norway]]></title>
  <description><![CDATA[
<p>Info on Uni Computing (Webpage: http://www.bccs.uni.no/) :</p>

<p>Uni Computing (formerly Uni BCCS) is a department of Uni Research, affiliated with the University of Bergen.</p>

<p>5 groups in this lab works on computational resources, methods, algorithms, and software.</p>

<p>Following two bioinformatics groups are:</p>

<p>The Computational Biology Unit (CBU) provides education and research in bioinformatics focused on functional genomics.</p>

<p>The Computational Ecology Unit (CEU) is basically deal with population fluctuations, behavioural patterns and the ways life cycles emerge.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/view/2021</guid>
	<pubDate>Mon, 12 Aug 2013 09:27:57 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/2021</link>
	<title><![CDATA[What are the difference between BioRuby and BioGem?]]></title>
	<description><![CDATA[<p>I came across two diferent but matching term BioRuby and BioGem. What are the difference between these two term? If both are using same Ruby language for development then why did they develope two different biological packages.</p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5401/the-minerva-research-group-for-bioinformatics-janet-kelso</guid>
  <pubDate>Wed, 09 Oct 2013 12:57:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Minerva Research Group for Bioinformatics (Janet Kelso)]]></title>
  <description><![CDATA[
<p>The focus of this group is to use computational approaches to gain an insight into genome evolution in primates.</p>

<p>PNAS papers:<br />http://www.pnas.org/search?author1=Janet+Kelso&amp;sortspec=date&amp;submit=Submit</p>

<p>Jobs:<br />http://www.eva.mpg.de/genetics/bioinformatics/jobs.html</p>

<p>Contact:<br />Kelso Group<br />Department of Evolutionary Genetics<br />Max Planck Institute for Evolutionary Anthropology<br />Deutscher Platz 6<br />04103 Leipzig<br />Germany<br />Email: kelso@eva.mpg.de</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4090/computational-biology-in-the-21st-century-making-sense-out-of-massive-data</guid>
	<pubDate>Thu, 29 Aug 2013 08:32:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4090/computational-biology-in-the-21st-century-making-sense-out-of-massive-data</link>
	<title><![CDATA[Computational Biology in the 21st Century: Making Sense out of Massive Data]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/I99UiA_vaJQ" frameborder="0" allowfullscreen></iframe>Computational Biology in the 21st Century: Making Sense out of Massive Data    
    
Air date:  Wednesday, February 01, 2012, 3:00:00 PM
Category:  Wednesday Afternoon Lectures  
 
Description:  The last two decades have seen an exponential increase in genomic and biomedical data, which will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from these massive datasets will require not only faster computers; it will require smarter algorithms. We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biological networks. 

The NIH Wednesday Afternoon Lecture Series includes weekly scientific talks by some of the top researchers in the biomedical sciences worldwide. 

Author:  Dr. Bonnie Berger  
Runtime:  00:58:06  
Permanent link:  http://videocast.nih.gov/launch.asp?17563]]></description>
	
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