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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28915?offset=580</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36508/mitobim-mitochondrial-baiting-and-iterative-mapping</guid>
	<pubDate>Tue, 08 May 2018 04:15:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36508/mitobim-mitochondrial-baiting-and-iterative-mapping</link>
	<title><![CDATA[MITObim - mitochondrial baiting and iterative mapping]]></title>
	<description><![CDATA[<p>This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found&nbsp;<a href="http://nar.oxfordjournals.org/content/41/13/e129" title="MITObim full article at NAR">here</a>. Kindly cite the article if you are using MITObim in your work. The pipeline was originally developed for&nbsp;<span>Illumina</span>&nbsp;data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data from the&nbsp;<span>Iontorrent</span>,&nbsp;<span>454</span>&nbsp;and&nbsp;<span>PacBio</span>&nbsp;sequencing platforms.</p>
<p>Below you can find a few basic tutorials for how to run MITObim and I encorage you to give them a try with the testdata that comes with this Repo, just to make sure everything is running smoothly on your system. It'll only take a few minutes and will potentially safe you a lot of time down the line.</p>
<p>I provide further examples&nbsp;<a href="https://github.com/chrishah/MITObim/tree/master/examples">here</a>&nbsp;as Jupyter notebooks. Get in touch if you feel like sharing your particular MITObim solution and I'd be happy to put it up here, too!</p><p>Address of the bookmark: <a href="https://github.com/chrishah/MITObim" rel="nofollow">https://github.com/chrishah/MITObim</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22234/national-institute-of-biologicals-recruitment-2015</guid>
  <pubDate>Mon, 27 Apr 2015 19:44:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[National Institute of Biologicals Recruitment 2015]]></title>
  <description><![CDATA[
<p>National Institute of Biologicals (NIB), Noida<br />Job Code: 260415(04)Y</p>

<p>National Institute of Biologicals (NIB), Noida invites applications to recruit on vacant posts of Scientist, Training Officer, Administrative Assistant, Stenographer, Junior Engineer, Computer Operator etc. Applications against these Government Jobs can be submitted on or before 01 July 2015.</p>

<p>NIB Vacancy 2015 Details<br />1. Scientist Grade III – 06<br />Qualification: PG degree in the concern field.<br />Age Limit: 35 Years</p>

<p>2. Junior Scientist – 07<br />Qualification: M.Sc. in Microbiology / Clinical Microbiology / Biotechnology/ Bioinformatics/ Biochemistry/Bacteriology/Pharmacology/ Serology / Molecular Biology/Physiology from any recognized University with at least 60% marks.<br />Age Limit: 30 Years</p>

<p>How to Apply: Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Administrative Officer, National Institute of Biologicals (Ministry of Health &amp; Family Welfare), A-32, Sector-62, Institutional Area, Noida-201309. Click here to obtain application form.</p>

<p>The Last Date to apply to NIB Job is 01 July 2015.</p>

<p>Click here to view details http://nib.gov.in/Advt%20%20%2824.04.2015%29.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43546/introduction-to-phylogenies-in-r</guid>
	<pubDate>Wed, 13 Oct 2021 02:27:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43546/introduction-to-phylogenies-in-r</link>
	<title><![CDATA[Introduction to phylogenies in R]]></title>
	<description><![CDATA[<p><span>R phylogenetics is built on the contributed packages for phylogenetics in R, and there are many such packages. Let's begin today by installing a few critical packages, such as ape, phangorn, phytools, and geiger. To get the most recent CRAN version of these packages, you will need to have R 3.3.x installed on your computer!</span></p><p>Address of the bookmark: <a href="http://www.phytools.org/Cordoba2017/ex/2/Intro-to-phylogenies.html" rel="nofollow">http://www.phytools.org/Cordoba2017/ex/2/Intro-to-phylogenies.html</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22429/walk-ins-for-jrf-ans-srf-post-in-nirrh-mumbai</guid>
  <pubDate>Thu, 28 May 2015 19:04:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-ins for JRF ans SRF post in NIRRH, Mumbai]]></title>
  <description><![CDATA[
<p>Title of project- "EXPLORING THE HINGE AND TRANSMEMBRANE REGION OF HUMAN FSHR FOR DESIGN OF SMALL MOLECULE AND PEPTIDOMIMETIC MODULATORS"<br />Name of the Post- Junior Research Fellow<br />No. of vacancy- One<br />Stipend- Rs. 25000/ +30% HRA<br />Essential qualification- Candidate should be Post Graduate Degree in Life Sciences / Bioinformatics /Pharmacology/ Chemistry or any other relevant area of Biology or Graduate Degree in Professional Course with NET qualification or Post Graduate Degree in Professional Course.<br />Desirable- Candidate with Good knowledge of protein structures, docking, MD simulations will be preferred.<br />Age Limit- Not exceeding 28 Years<br />Duration of project- Upto May 2018</p>

<p>Title of project- "Analysis of the structures of known antimicrobial peptides using machine learning algorithms and molecular dynamics simulations".<br />Name of the Post- Senior Research Fellow<br />No. of vacancy- One<br />Stipend- Rs. 14000/ +30% HRA<br />Essential qualification- Candidate should be having M.Sc. degree in Life Sciences / Bioinformatics / Pharmacology/ Chemistry or any other relevant area of Biology and 2 years of research experience.<br />Desirable- Candidate with Good knowledge of protein structures, docking, MD simulations will be preferred.<br />Age Limit- Not exceeding 35 Years<br />Duration of project- Upto April 2016<br />How to Apply- Interested candidates can download the application form from below mentioned link- http://www.nirrh.res.in/links/BiodataForm.pdf<br />Candidate must bring the filled up application form along with all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph.</p>

<p>Ref. - http://www.nirrh.res.in/links/job_jrf-srf.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44401/bioinformatics-tools-for-phylogeny</guid>
	<pubDate>Mon, 06 Nov 2023 03:09:59 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44401/bioinformatics-tools-for-phylogeny</link>
	<title><![CDATA[Bioinformatics Tools for Phylogeny !]]></title>
	<description><![CDATA[<p><span>Direct access to the individual tools available on this server.</span></p><table summary="list of individual tools">
<thead>
<tr><th>Multiple Alignment:</th><th>Phylogeny:</th><th>Tree viewers:</th><th>Utilities:</th></tr>
</thead>
<tbody>
<tr>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=muscle">MUSCLE</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=phyml">PhyML</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=treedyn">TreeDyn</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=gblocks">Gblocks</a></td>
</tr>
<tr>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=tcoffee">T-Coffee</a>&nbsp;/&nbsp;<a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=expresso">3DCoffee</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=tnt">TNT</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=drawgram">Drawgram</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=jalview">Jalview</a></td>
</tr>
<tr>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=clustalw">ClustalW</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=bionj">BioNJ</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=drawtree">Drawtree</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=readseq">Readseq</a></td>
</tr>
<tr>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=probcons">ProbCons</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=mrbayes">MrBayes</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/one_task.cgi?task_type=atv">ATV (A Tree Viewer)</a></td>
<td><a href="http://phylogeny.lirmm.fr/phylo_cgi/data_converter.cgi">Built-in converter</a></td>
</tr>
</tbody>
</table>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22286/jrf-bioinformatics-pune-university</guid>
  <pubDate>Wed, 06 May 2015 06:21:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ Pune University]]></title>
  <description><![CDATA[
<p>Pune University is inviting applications from indian citizens for recruiting following posts:</p>

<p>Vacancies:<br />Junior Research Fellow-04<br />Age Limits:<br />Candidates age should be not more than 28 years.<br />Qualification:<br />Candidates should possess M.Sc in Microbiology/ Marine microbiology/Marine Biotechnology/ Bioinformatics/Zoology or equivalent degree with minimum 60% marks.<br />Selection Process:<br />Shortlisted candidates will be called for interview.<br />How to Apply:<br />Eligible candidates may send their applications in the prescribed format along with CV in an envelope should be superscribed as the "Application for the post of JRF" to Head Department of Zoology, Savitribai Phule Pune University on or before 10-05-2015.<br />Last Date:<br />10-05-2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35057/ectools-long-read-correction-and-other-correction-tools</guid>
	<pubDate>Fri, 05 Jan 2018 04:02:22 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35057/ectools-long-read-correction-and-other-correction-tools</link>
	<title><![CDATA[ECTOOLS: Long Read Correction and other Correction tools]]></title>
	<description><![CDATA[<p>Long Read Correction and other Correction tools</p>
<p>This package is a loose collection of scripts. To run the correction<br>routine see the section below. Descriptions of the other scripts<br>are at the bottom of this file.</p>
<p>Contact: gurtowsk@cshl.edu</p>
<p>In short, the correction algorithm takes as input the unitigs from a short read assembly and uses them to correct long read data. More background information for the algorithm can be found:<br>http://schatzlab.cshl.edu/presentations/2013-06-18.PBUserMeeting.pdf</p><p>Address of the bookmark: <a href="https://github.com/jgurtowski/ectools" rel="nofollow">https://github.com/jgurtowski/ectools</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/22352/affy-has-acquired-eureka-genomics-for-15m</guid>
	<pubDate>Wed, 20 May 2015 15:11:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/22352/affy-has-acquired-eureka-genomics-for-15m</link>
	<title><![CDATA[Affy has acquired Eureka Genomics for 15M $]]></title>
	<description><![CDATA[<p>Affymetrix Acquires Assets Of Eureka Genomics Corporation To Provide High Throughput And Economical Crop And Animal Genotyping</p><p>http://www.thestreet.com/story/13151062/1/affymetrix-acquires-assets-of-eureka-genomics-corporation-to-provide-high-throughput-and-economical-crop-and-animal-genotyping.html</p>]]></description>
	<dc:creator>Martin Jones</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37915/dna-nucleotide-counter</guid>
	<pubDate>Fri, 12 Oct 2018 04:37:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37915/dna-nucleotide-counter</link>
	<title><![CDATA[DNA Nucleotide Counter]]></title>
	<description><![CDATA[<p style="margin: 2px 5px 4px 6px; color: #000011; font-size: 12px; font-style: normal; font-weight: 400; text-align: justify;">DNA Nucleotide Counter is delivered in a DNA Baser package together with other free molecular biology tools.<span>&nbsp;</span><a href="http://www.dnabaser.com/download/biology-tools-package-download-count.html">Download</a><span>&nbsp;</span>the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder&nbsp;and double click the program you want to use.</p>
<p style="margin: 2px 5px 4px 6px; color: #000011; font-size: 12px; font-style: normal; font-weight: 400; text-align: justify;">It<span>&nbsp;</span><a href="http://www.dnabaser.com/download/install-anywhere.html">installs in any computer</a><span>&nbsp;</span>even if you don't have administrator rights!</p><p>Address of the bookmark: <a href="http://www.dnabaser.com/download/DNA-Counter/index.html" rel="nofollow">http://www.dnabaser.com/download/DNA-Counter/index.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/22402/alessandra-carbone-lab</guid>
  <pubDate>Tue, 26 May 2015 08:54:34 -0500</pubDate>
  <link></link>
  <title><![CDATA[Alessandra Carbone Lab]]></title>
  <description><![CDATA[
<p>Our group works on various problems connected with the functioning and evolution of biological systems. We use mathematical tools, coming from statistics and combinatorics, algorithmic tools and molecular physics tools to study basic principles of cellular functioning starting from genomic data. We run several projects in parallel, all aiming at understanding the basic principles of evolution and co-evolution of molecular structures in the cell. They are intimately linked to each other.</p>

<p>Our main research themes are:</p>

<p>Domain annotation and metagenomics <br />Transcriptomics and sequence analysis<br />Protein evolution and interactions<br />Protein conformational dynamics</p>

<p>More at http://www.lcqb.upmc.fr/AnalGenom/home.html</p>
]]></description>
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