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<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/28997?offset=1510</link>
	<atom:link href="https://bioinformaticsonline.com/related/28997?offset=1510" rel="self" type="application/rss+xml" />
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</guid>
	<pubDate>Wed, 09 Nov 2016 16:23:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/29679/comparative-genomics-educational-material-and-papers-bookmarks</link>
	<title><![CDATA[Comparative genomics educational material and papers bookmarks]]></title>
	<description><![CDATA[<p><span>Alignment of the porcine genome against seven other mammalian genomes (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Information</a><span>) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs </span><span>is comparable to the number of bovine-lineage-specific EBRs (100) reported earlier using a slightly lower resolution (500</span><span><span>&thinsp;</span></span><span>kilobases (kb)), indicating that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60</span><span><span>&thinsp;</span></span><span>Myr ago</span><sup><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#ref2" title="Meredith, R. W. et al. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334, 521-524 (2011)">2</a></sup><span>. This rate compares to ~1.9 rearrangements per million years within the primate lineage (</span><a href="http://www.nature.com/nature/journal/v491/n7424/full/nature11622.html#supplementary-information">Supplementary Table 11</a><span>). A total of 20 and 18 cetartiodactyl EBRs (shared by pigs and cattle) were detected using the pig and human genomes as a reference, respectively.</span></p><p>Address of the bookmark: <a href="http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html" rel="nofollow">http://www.nature.com/nature/journal/v491/n7424/abs/nature11622.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29886/research-officer-at-national-tea-research-foundation</guid>
  <pubDate>Fri, 18 Nov 2016 04:19:24 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Officer at National Tea Research Foundation]]></title>
  <description><![CDATA[
<p>National Tea Research Foundation (NTRF) a registered body, requires qualified and experienced agricultural research scientist for contractual appointment as per details below :</p>

<p>Post Research Officer, NTRF, Kolkata</p>

<p>Essential Post Graduate degree in Life Science having special paper in Bioinformatics. Post Graduate degree in Bioinformatics.</p>

<p>Desirable Ph. D. in the area of computational biology or bioinformatics.</p>

<p>Job Experience Work experience on database development, capable to work independently and efficient in bioinformatics related project.</p>

<p>Job Responsibility</p>

<p>To develop database on various aspects of tea research.</p>

<p>Screening of the In-house projects of NTRF at the preliminary level.</p>

<p>Review and evaluation of In-house projects of NTRF. Technical monitoring of the In-house projects of NTRF.</p>

<p>Reviewing the final technical report of the In-house projects of NTRF.</p>

<p>Putting-up of same proposals for taking approval and sanction of the competent authority.</p>

<p>Physical and technical verification of the In-house projects of NTRF.</p>

<p>To assist in organizing seminars / workshops / meetings etc.</p>

<p>Interested candidate may appear for walk-in Interview on 17 th November, 2016</p>

<p>More Info :</p>

<p>http://www.teaboard.gov.in/pdf/Recruitment_for_the_post_of_Research_Officer_pdf7538.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/29998/csir-nehru-science-postdoctoral-research-fellowship</guid>
  <pubDate>Tue, 29 Nov 2016 12:34:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[CSIR Nehru Science Postdoctoral Research Fellowship]]></title>
  <description><![CDATA[
<p>CSIR Nehru Science Postdoctoral Research Fellowship</p>

<p>About Fellowship: <br />CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows.</p>

<p>It was started to identify promising and young researchers with novel ideas and provide them research opportunities in the areas of basic science, engineering, medicine &amp; agriculture.</p>

<p>The fellowship aims at facilitating their transition from mentored to independent research career.</p>

<p>In addition, check these ICTS Research Fellowships:<br />1.) Max-Planck Partner Group Fellowships 2017-18<br />2.) ICTS-Simons Postdoctoral Fellowships 2017<br />3.) ICTS Post Doctoral Fellowships 2017<br />4.) Airbus Prize Postdoctoral Fellowship 2017-18</p>

<p>Eligibility: To be eligible for this fellowship, you:<br />1.) PhD degree (within 3 years of award of PhD degree), OR<br />2.) Those who have submitted PhD theses.<br />3.) Applicants should have research publications in good impact factor SCI journals.<br />4.) Indian nationals, Persons of Indian Origin (PIO) &amp; Overseas Citizen of India (OCI), a can also apply.<br />5.) Maximum Age Limit: 32 years.</p>

<p>Duration: <br />– 2 Years.<br />– extendable for a maximum of 1 more year based on performance.</p>

<p>Remuneration: <br />– Rs. 50,000/- per month plus House Rent Allowance (HRA)<br />– A contingency grant of Rs. 3.0 lakh per annum.<br />– 25% of the contingency grant can be used for domestic and international travel.</p>

<p>Mode of Selection: You can apply throughout the year, but selection will be made twice a year, in June and December.</p>

<p>How to Apply: <br />– Read the instructions, given at Annexure-I in this PDF file.<br />– And, application form is given as, Annexure-II.<br />– Fill the form &amp; send it to the given address in the PDF file.</p>

<p>Deadline: Rolling Deadline (Applications accepted throughout the year)</p>

<p>Also See: Research Internship/ Fellowship in India:<br />1.) IIT Bombay Research Internship Awards Programme 2016-17<br />2.) IIT Delhi Internship Program 2016-17<br />3.) DAAD WISE – International Internship in Germany<br />4.) Summer Research Fellowship Programme| JNCASR Bangalore<br />5.) Indian Academy of Sciences Summer Internships 2017<br />6.) Winter Internship – IIT Bombay NPDE-TCA<br />7.) Viterbi – India Program 2017 | Research Internship in US<br />8.) Internship – Centre for Stem Cell Research, Vellore</p>

<p>Accommodation &amp; other benefits: <br />– Accommodation may be provided by CSIR, if available.<br />– Medical benefits as per CSIR norms.</p>

<p>For more details: <br />– Check this PDF Notification of Fellowship.<br />– List of CSIR Labs &amp; their work/activities can be seen at www.csir.res.in.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30198/faculty-at-indian-institute-of-science-education-and-research-berhampur</guid>
  <pubDate>Mon, 19 Dec 2016 03:34:26 -0600</pubDate>
  <link></link>
  <title><![CDATA[Faculty at Indian Institute of Science Education and Research Berhampur]]></title>
  <description><![CDATA[
<p>Advt. No: IISERBPR/DoFA/2016/2</p>

<p>Advertisement for Faculty Positions</p>

<p>The IISER Berhampur, an Institute of national importance, established through an act of Parliament is an autonomous organization under the Ministry of HRD, Govt. of India, to promote quality education and cutting edge research in basic sciences and to provide a platform for the faculty to engage in high quality education, at undergraduate and postgraduate levels. The Institute invites applications for faculty positions at the level of Assistant Professor (C) /Assistant Professor in the following disciplines:</p>

<p>1. Biological Sciences</p>

<p>2. Chemistry</p>

<p>3. Computer Sciences</p>

<p>4. Mathematics</p>

<p>5. Physics</p>

<p>Only hard copy of application in the prescribed format, via Speed Post should be sent to the Dean, Faculty Affairs, IISER Berhampur, Industrial Training Institute (ITI) Berhampur, Engineering School Road, Berhampur - 760 010, Ganjam District, Odisha, before 1700 hrs., December 30, 2016.</p>

<p>http://www.iiserbpr.ac.in</p>

<p>More Info : http://www.iiserbpr.ac.in/vacancies/Advertisement%20for%20Faculty%20Positions%20at%20IISER%20Berhampur.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30334/postdoc-at-ubritishcolumbia-in-troutgenomics</guid>
  <pubDate>Thu, 22 Dec 2016 08:18:46 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc at UBritishColumbia in TroutGenomics]]></title>
  <description><![CDATA[
<p>Landscape Genomics Postdoc at UBC A research team at the University of British Columbia’s Department of Zoology and Biodiversity Research Centre is seeking a postdoctoral researcher in landscape genetics of native rainbow trout (Oncorhynchus mykiss). </p>

<p>This project is part of a larger Genome Canada project on genetics and physiology of adaptation to climate change in rainbow trout, and the population genomics component is in the labs of Eric Taylor and Michael Whitlock. The landscape genomics component primarily involves whole genome sequencing approaches to understanding the genomic basis of adaptation to features of habitat, but also to provide insights into phylogeography and the influence of watershed structure on population subdivision in rainbow trout. A PhD in a related field with expertise in basic theory and bioinformatic analysis of population genomics data is required. </p>

<p>The position is available for one year with renewal for up to three additional years. Salary is $55,000 per year plus benefits. To apply, please send a brief cover letter summarizing your qualifications for the position, a CV, and the names, addresses, phone numbers and emails of three references. </p>

<p>Review of applications will begin January 16, 2017. Address application materials to etaylor@zoology.ubc.ca to whom any questions can also be addressed. etaylor@zoology.ubc.ca</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/30680/easybuild</guid>
	<pubDate>Fri, 27 Jan 2017 16:00:43 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/30680/easybuild</link>
	<title><![CDATA[EasyBuild]]></title>
	<description><![CDATA[<p><a href="https://github.com/hpcugent/easybuild">EasyBuild</a><span>&nbsp;is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.</span><br><span>A full list of supported software packages is available&nbsp;</span><a href="http://easybuild.readthedocs.io/en/latest/version-specific/Supported_software.html">here</a><span>.</span></p><p>Address of the bookmark: <a href="https://hpcugent.github.io/easybuild/" rel="nofollow">https://hpcugent.github.io/easybuild/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/30744/binc-2017</guid>
	<pubDate>Wed, 01 Feb 2017 09:36:22 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/30744/binc-2017</link>
	<title><![CDATA[BINC 2017]]></title>
	<description><![CDATA[<p><span>Pondicherry University,Puducherry,on behalf of Department of Biotechnology, Government of India, conducted the BINC examination in&nbsp;</span><span style="color: blue;">2015 and 2016.&nbsp;</span><span>The objective of this examination is to certify bioinformatics professionals, trained formally as well as self-trained.</span><span style="color: blue;">Registration for BINC 2017 examination will open from January 29,2017 to February 28,2017.</span><span>&nbsp;</span></p><p><span>Pondicherry University, Puducherry has been identified as a nodal agency by the Department of Biotechnology, Govt. of India to coordinate this examination along with nine centres namely, </span></p><p><span>Pune University, Pune; </span></p><p><span>Anna University, Chennai; </span></p><p><span>Bose Institute, Kolkata; </span></p><p><span>Institute of Bioinformatics &amp; Applied Biotechnology, Bangalore; </span></p><p><span>North-Eastern Hill University, Shillong, University of Hyderabad, Hyderabad; </span></p><p><span>University of Kerala, Thiruvananthapuram; </span></p><p><span>Jawaharlal Nehru University, New Delhi and </span></p><p><span>Assam Agricultural University, Guwahati.</span><span style="color: blue;"><strong>&nbsp;</strong></span></p><p><span style="color: blue;"><strong>In the BINC 2015 and 2016 examination, 23 candidates and five candidates were certified respectively.</strong></span><span>&nbsp;DBT has agreed to fund Research fellowships for all the BINC qualified Indian nationals to pursue Ph.D. in Indian Institutes/Universities. </span></p><p><span>Note that the candidate must possess a postgraduate degree(or equivalent) &amp; meet the criteria of the institutes/universities in order to avail research fellowship. </span></p><p><span>In addition, cash prize of Rs. 10,000/- will be awarded to the top 10 BINC qualifiers.</span></p><p><span>More at&nbsp;http://www.pondiuni.edu.in/exams/binc/</span></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/30874/important-journals-blogs-and-forums-for-bioinformaticians</guid>
	<pubDate>Wed, 08 Feb 2017 09:15:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/30874/important-journals-blogs-and-forums-for-bioinformaticians</link>
	<title><![CDATA[Important Journals, Blogs and Forums for Bioinformaticians]]></title>
	<description><![CDATA[<p><em>Journals</em>. Most journals have RSS feeds for their current updates.</p><ul>
<li><a href="http://bioinformatics.oxfordjournals.org/rss/" target="_blank">Bioinformatics - RSS feed of current and advance online publications</a></li>
<li><a href="http://genome.cshlp.org/rss/" target="_blank">Genome Research - current &amp; advance</a></li>
<li><a href="http://genomebiology.com/" target="_blank">Genome Biology - editors picks, latest, most viewed, most forwarded</a>. (Hit the RSS icon under each tab).</li>
<li><a href="http://www.plosgenetics.org/static/rssFeeds.action" target="_blank">PLoS Genetics - new articles</a></li>
<li><a href="http://www.ploscompbiol.org/static/rssFeeds.action" target="_blank">PLoS Computational Biology - new articles</a></li>
<li><a href="http://www.nature.com/ng/newsfeeds.html" target="_blank">Nature Genetics - current TOC and AOP</a></li>
<li><a href="http://www.nature.com/nrg/info/newsfeeds.html" target="_blank">Nature Reviews Genetics - current TOC and AOP</a></li>
</ul><ul>
<li><a href="https://academic.oup.com/bioinformatics" target="_blank">Bioinformatics</a></li>
<li><a href="https://bmcbioinformatics.biomedcentral.com/" target="_blank">BMC Bioinformatics</a></li>
<li><a href="https://academic.oup.com/bib" target="_blank">Briefings in Bioinformatics</a></li>
<li><a href="http://genomebiology.biomedcentral.com/" target="_blank">Genome Biology</a></li>
<li><a href="http://genome.cshlp.org/rss/" target="_blank">Genome Research: current and AOP</a></li>
<li><a href="http://microbiomejournal.biomedcentral.com/" target="_blank">Microbiome</a></li>
<li><a href="http://www.nature.com/ng/newsfeeds.html" target="_blank">Nature Genetics, current &amp; AOP</a></li>
<li><a href="http://www.nature.com/nrg/info/newsfeeds.html" target="_blank">Nature Reviews Genetics, current &amp; AOP</a></li>
<li><a href="https://academic.oup.com/nar" target="_blank">Nucleic Acids Research</a></li>
<li><a href="http://journals.plos.org/ploscompbiol/s/help-using-this-site#loc-article-feeds" target="_blank">PLOS Computational Biology</a></li>
<li><a href="http://journals.plos.org/plosgenetics/s/help-using-this-site#loc-article-feeds" target="_blank">PLOS Genetics</a></li>
</ul><p><em>Blogs</em><span>. Some of these blogs are very relevant to bioinfo jobs. Others are more personal interest.</span></p><ul>
<li><a href="http://blog.openhelix.eu/" target="_blank">The OpenHelix Blog</a></li>
<li><a href="http://www.ensembl.info/" target="_blank">Ensembl blog</a></li>
<li><a href="http://wiki.g2.bx.psu.edu/News" target="_blank">Galaxy News</a></li>
<li><a href="http://bcbio.wordpress.com/" target="_blank">Blue Collar Bioinformatics</a></li>
<li><a href="http://www.homolog.us/blogs/" target="_blank">Homologus</a></li>
<li><a href="http://blog.goldenhelix.com/" target="_blank">Golden Helix - our 2 SNPs</a></li>
<li><a href="http://genomicslawreport.com/" target="_blank">Genomics Law Report</a></li>
<li><a href="http://www.r-bloggers.com/" target="_blank">R-bloggers</a>&nbsp;(aggregates feeds from &gt;350 blogs about R)</li>
<li><a href="http://genomesunzipped.org/" target="_blank">Genomes Unzipped</a></li>
<li><a href="http://compgen.blogspot.com/" target="_blank">Jason Moore's Epistasis Blog</a></li>
<li><a href="http://spittoon.23andme.com/" target="_blank">23andMe - the Spitoon</a></li>
</ul><ul>
<li><a href="http://varianceexplained.org/" target="_blank">Variance Explained</a>: David Robinson&rsquo;s blog (Data Scientist at Stack Overflow, works in R and Python).</li>
<li><a href="https://globalbiodefense.com/" target="_blank">Global Biodefense</a>: News on pathogens, outbreaks, and preparedness, with periodic posts on genomics and bioinformatics-related developments and funding opportunities.</li>
<li><a href="https://flxlexblog.wordpress.com/" target="_blank">In between lines of code</a>: Lex Nederbragt&rsquo;s blog on biology, sequencing, bioinformatics, &hellip;</li>
<li><a href="http://simplystatistics.org/" target="_blank">Simply Statistics</a>: A statistics blog by Rafa Irizarry, Roger Peng, and Jeff Leek.</li>
<li><a href="https://liorpachter.wordpress.com/" target="_blank">Bits of DNA</a>: Reviews and commentary on computational biology by Lior Pachter (fair warning: dialogue here can get a bit heated!).</li>
<li><a href="http://bcb.io/articles/" target="_blank">Blue Collar Bioinformatics</a>: articles related tool validation and the open source bioinformatics community.</li>
<li><a href="https://microbiomedigest.com/" target="_blank">Microbiome Digest &ndash; Bik&rsquo;s Picks</a>: A daily digest of scientific microbiome papers, by Elisabeth Bik, Science Editor at uBiome.</li>
<li><a href="http://ivory.idyll.org/blog/" target="_blank">Living in an Ivory Basement</a>: Titus Brown&rsquo;s blog on metagenomics, open science, testing, reproducibility, and programming.</li>
<li><a href="http://enseqlopedia.com/" target="_blank">Enseqlopedia</a>: James Hadfield&rsquo;s blog on all things NGS.</li>
<li><a href="http://www.epistasisblog.org/" target="_blank">Epistasis Blog</a>: Jason Moore&rsquo;s computational biology blog.</li>
<li><a href="https://blog.rstudio.org/" target="_blank">RStudio Blog</a>: announcements about new RStudio functionality, updates about the&nbsp;<a href="http://tidyverse.org/" target="_blank">tidyverse</a>, and more.</li>
<li><a href="http://nextgenseek.com/" target="_blank">nextgenseek.com</a>: Next-Gen Sequencing Blog covering new developments in NGS data &amp; analysis.</li>
<li><a href="http://www.rna-seqblog.com/" target="_blank">RNA-Seq Blog</a>: Transcriptome Research &amp; Industry News.</li>
<li><a href="http://www.theallium.com/" target="_blank">The Allium</a>: We all need a little humor in our lives. Like&nbsp;<em>The Onion</em>, but for science.</li>
</ul><p><em>Forums.</em></p><ul>
<li><a href="http://seqanswers.com/forums/forumdisplay.php?f=18" target="_blank">Seqanswers - bioinformatics forum</a></li>
<li><a href="http://seqanswers.com/forums/forumdisplay.php?f=26" target="_blank">Seqanswers - RNA-Seq forum</a></li>
<li><a href="http://www.biostars.org/rss/" target="_blank">BioStar</a></li>
<li><a href="http://bioinformaticsonline.com/">BOL</a></li>
</ul>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/30928/jrf-bioinformatics-job-vacancies-in-tezpur-university</guid>
  <pubDate>Tue, 14 Feb 2017 16:40:26 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics job vacancies in Tezpur University]]></title>
  <description><![CDATA[
<p>Memo No. DoRD/CSE/SSS/20-295/112-A Date: 01/02/2017</p>

<p>Project Title : Integrating genome scale metabolic analysis of model plant pathogen Ralstonia solanacearum with RNAseq and fluxomics</p>

<p>Essential qualification : M.Tech. in CSE/IT (With specialization in Computational Biology/Bioinformatics) or M.Sc. in Bioinformatics/Biosciences/Molecular Biology Biotechnology preferably with NET/GATE/BET. Candidates should have minimum 55 % mark both in 10th and 10+2 Science examinations and mathematics at 10+2 Science. Desirable: Preference will be given to the candidates having experience in computational analysis of genome sequences or similar projects.</p>

<p>No. of Post : 01</p>

<p>Remuneration : Rs. 25,000/- for the 1st two years and Rs. 28,000/- for the 3rd year for SRF and applicable to the candidate having post graduate degree in Basic Science with NET/GATE/BET qualification or post graduate degree in professional course. Rs. 12,000/- for the 1st two years and Rs. 14,000/- for the 3 rd year for SRF, </p>

<p>Age : 28 years</p>

<p>Duration : Three (03) years or till completion of the project or until further order, whichever is earlier.</p>

<p>Hiring Process : Walk - In<br />Job Role: Research/JRF/SRF</p>

<p>Walk-in-interview will be held on 17th February, 2017, 11.15 a.m. at the office of the Head, Department of Computer Science and Engineering, Tezpur University.</p>

<p>Interested candidates may appear before the interview board with original documents from 10th standard onwards and photocopies of mark sheets, certificates, testimonials, caste certificate (if applicable), experience certificate certificates of NET/GATE/BET or similar examination qualifications, any other testimonials and a copy of recent curriculum vitae (CV) on the day of interview.</p>

<p>More at http://www.tezu.ernet.in/ProjectWalkin/Advt-DoRD-CSE-SSS-20-295-112-A.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/32227/postdoctoral-research-position-in-bioinformatics-in-milan</guid>
  <pubDate>Thu, 20 Apr 2017 12:53:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Research Position in Bioinformatics in Milan]]></title>
  <description><![CDATA[
<p>The lab of Immunobiology of Neurological Disorders has a main interest in the biological processes associated with multiple sclerosis, an inflammatory disorder of the central nervous system. The projects of interest for this application involve research on translational bioinformatics in complex human neurological disorders.</p>

<p>You have a  PhD in Computational Science, Bioinformatics,  or equivalent, and expertise in analysis and modeling of human RNA-seq data, statistics, data mining and machine learning. Excellent communication skills in English (written and oral) is a must. Flexibility and willingness to work across multiple projects and technologies in a rapidly evolving scientific context is required.<br />Salary will depend on qualification and experience. Starting date: immediate.</p>

<p>Interested candidates should send to farina.cinthia@hsr.it:</p>

<p>1. CV (please show evidences of relevant titles, projects, courses, references, etc.)           <br />2. One page with a list of research topics (i.e. ongoing projects)     <br />3. earliest availability</p>

<p>4. 2-3 contact names</p>
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