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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29142?offset=840</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43725/comparative-genomics-workshops</guid>
	<pubDate>Tue, 25 Jan 2022 20:39:58 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43725/comparative-genomics-workshops</link>
	<title><![CDATA[Comparative Genomics Workshops !]]></title>
	<description><![CDATA[<p><span>This meeting's objective was to obtain a big picture look at the current state of the field of comparative&nbsp;genomics with a focus on commonalities across genomic investigations into humans, model organisms&nbsp;(both traditional and non-traditional), agricultural species, wildlife species and microbes.</span></p>
<p>https://www.genome.gov/event-calendar/perspectives-in-comparative-genomics-and-evolution</p><p>Address of the bookmark: <a href="https://www.genome.gov/event-calendar/perspectives-in-comparative-genomics-and-evolution" rel="nofollow">https://www.genome.gov/event-calendar/perspectives-in-comparative-genomics-and-evolution</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/14899/post-doc-positions-at-the-institute-of-evolution-university-of-haifa-haifa-israel</guid>
  <pubDate>Thu, 04 Sep 2014 03:59:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-Doc Positions at the Institute of Evolution, University of Haifa, Haifa, Israel]]></title>
  <description><![CDATA[
<p>We are looking for independent, motivated, diligent, laborious, dedicated Bioinformaticians as post-doctorate fellows for a project aimed at revealing the mechanisms of cancer-resistance and anti-cancer activity of the hypoxia-tolerant subterranean, blind mole-rat, Spalax along its underground evolutionary adaptations. Our project has captured the interest of the scientific community and we have ample financial support for the studies. Generous fellowships ($30K to $40K according to qualifications and performance) are available, immediately, for Post-Docs experts in bioinformatics with a background of good understanding biological questions. That is that can independently handle raw output data of RNA-seq / miR seq/ Genomic, analyze it and can interpret intelligently the relevant biological background. Outstanding candidates for PhD experienced in Bioinformatics will also be considered. Familiarity with cancer research is an advantage. Experience of writing manuscripts for publication and a publication record in relevant journals are expected. English skills both oral and written are required. American, Western-European or Israeli education is a significant benefit. </p>

<p>Our present objectives is to identify and isolate the substances secreted by Spalax cells, resolve with which components they interact that are active only on cancer cells, in order to unravel the biological mechanisms and pathways that evolved in Spalax cell machinery and ultimately lead to the death of cancer-cells. The study could attest to be a breakthrough in cancer research, using the long lived, hypoxia- and cancer-tolerant Spalax as a significant biological resource for biomedical research that hopefully could open new horizons in treatment and prevention of cancer in humans. </p>

<p>Contact: The applications should be submitted, together with extended CV and bibliography, summary of past accomplishments, and contact information of 3 referees, to Prof of Research Aaron Avivi (aaron@research.haifa.ac.il) AND Dr. Imad Shams (imadshams@gmail.com). (http://bit.ly/1lywShk) aaron@research.haifa.ac.il </p>

<p>More at http://evolution.haifa.ac.il/index.php/29-people/personal-websites/77-personal-site-avivi</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44168/environmental-genomics-group-scilifelabkth-stockholm</guid>
	<pubDate>Thu, 01 Dec 2022 01:12:43 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44168/environmental-genomics-group-scilifelabkth-stockholm</link>
	<title><![CDATA[Environmental Genomics Group SciLifeLab/KTH Stockholm]]></title>
	<description><![CDATA[<p>Useful Metagenomics resources</p><p>Address of the bookmark: <a href="https://github.com/envgen" rel="nofollow">https://github.com/envgen</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/15030/software-engineercomputational-biologist-equinome-ltd-dublin-ireland</guid>
  <pubDate>Thu, 04 Sep 2014 19:21:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[Software engineer/Computational Biologist - Equinome Ltd., Dublin, Ireland]]></title>
  <description><![CDATA[
<p>Equinome (www.equinome.com) is the world leader in the research and<br />development of state-of-the-art novel genomic tools to inform the breeding,<br />selection and training of Thoroughbred racehorses. Since its launch in 2010,<br />Equinome has successfully commercialised three performance-related genetic<br />tests, with a pipeline of further genetic tests in development. We work with<br />many of the world's leading racehorse trainers and breeders in Europe,<br />Australasia, USA and South Africa. The company has been featured on CNN,<br />Bloomberg, RTE, BBC, The Guardian, Discovery Channel and Channel 4, among<br />others.</p>

<p>The Role</p>

<p>We are looking for a Software Engineer - Computational Biologist with 3+<br />years' experience in a similar role to design and implement a backend system<br />to support an online individualised genomics interface. This position is a<br />great opportunity for an ambitious, self-motivated individual to work in a<br />demanding, challenging and interesting role.</p>

<p>Position Description:<br />. Participate in planning, design, and implementation of Equinome back<br />end systems and technologies.<br />. Implement interfaces and management tools for back end services.<br />. Manage, analyse, interpret and visualise large genomics data sets.<br />. Work closely with scientific team to develop new features and<br />application enhancements<br />. Design, develop and manage a genomics research database.</p>

<p>Qualification/Experience:<br />. Minimum MSc in Computer Science, Genetics, Bioinformatics or in a<br />related field (A Ph.D qualification would be an advantage).<br />. Proven 3+ years of experience in similar role.<br />. Highly proficient in Python, SQL, MySQL.<br />. Excellent knowledge of mammalian genomics, bioinformatics and<br />statistical/population genetics.<br />. Hands-on experience working with large data sets.<br />. Experience with front-end technologies (HTML/CSS/Javascript) an<br />advantage.<br />. Experience in rapid web application development: e.g. Django.<br />. Knowledge or experience of Unix Scripting and R statistical<br />programming language would be an advantage.<br />. Ability to work with minimum supervision to deliver high-quality<br />code on time.<br />. Fluency in English and good written and communication skills.<br />. Meticulous attention to detail.</p>

<p>Applications should be submitted before Friday, 26 September 2014 using the<br />following link:<br />http://bit.ly/WgbhxS</p>

<p>Note: Full information and application procedure is available at this link:<br />http://bit.ly/WgbhxS</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/44342/ncbi-datasets%E2%80%AFpages</guid>
	<pubDate>Wed, 12 Jul 2023 06:29:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/44342/ncbi-datasets%E2%80%AFpages</link>
	<title><![CDATA[NCBI Datasets pages]]></title>
	<description><![CDATA[<p>Update! Assembly and Genome record pages now redirect to new NCBI Datasets pages. NCBI Datasets is a new resource that makes it easier to find and download genome data. Learn more: https://ncbiinsights.ncbi.nlm.nih.gov/2023/07/11/ncbi-datasets-genome-assembly-pages/&nbsp;<a href="https://ow.ly/GU3o50P8QH4"></a><a href="https://www.linkedin.com/feed/hashtag/?keywords=ncbicgr&amp;highlightedUpdateUrns=urn%3Ali%3Aactivity%3A7084592728260386816">#NCBICGR</a></p><p><span>Effective July 10, 2023, NCBI&rsquo;s Assembly and Genome record pages now redirect to&nbsp;</span>new<a href="https://www.ncbi.nlm.nih.gov/datasets/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=datasets-genome-assembly-redirect-20230711"> NCBI Datasets </a><span>pages. As&nbsp;</span><a href="https://ncbiinsights.ncbi.nlm.nih.gov/2023/03/07/ncbi-datasets-genome-taxonomy-pages/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=datasets-genome-assembly-redirect-20230711">previously announced</a><span>, these updates are part of our ongoing effort to modernize and improve your user experience. NCBI Datasets is a new resource that makes it easier to find and download genome data.  </span><span>&nbsp;</span></p><h5>The following pages have been updated:</h5><ul>
<li><span>The NCBI Assembly record pages now redirect to the new </span><a href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_023065955.2/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=datasets-genome-assembly-redirect-20230711"><span>NCBI Datasets</span><strong><span> </span></strong><span>Genome</span></a><span> </span><span>record pages that describe assembled genomes and provide links to related NCBI tools such as Genome Data Viewer and BLAST. </span><span>&nbsp;</span></li>
<li><span>The NCBI</span><strong> </strong><span>Genome record pages now redirect to the </span><a href="https://www.ncbi.nlm.nih.gov/datasets/taxonomy/9644/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=datasets-genome-assembly-redirect-20230711"><span>NCBI Datasets</span><strong><span> </span></strong><span>Taxonomy</span></a><span> </span><span>record pages that provide a taxonomy-focused portal to genes, genomes, and additional NCBI resources.  </span><span>&nbsp;</span></li>
</ul><p><span>During this transition, you will have the option to return to the legacy Genome and Assembly record pages. We will remove the legacy pages in early 2024. </span><span>&nbsp;</span></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/16313/project-assistant-position-at-jmi</guid>
  <pubDate>Fri, 12 Sep 2014 00:37:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant Position at JMI]]></title>
  <description><![CDATA[
<p>Project Assistant Position (@ Rs.10,000/pm Fixed) is available for one year ina research project funded by the Department of Science and Technology entitled, "Folding and stability of naturally truncated photosynthetic pigment,C- phycoerythrin from cyanobacterium Phormidium tenue", at Centre forInterdisciplinary Research in Basic Sciences, lamia Millia Islamia, New Delhi-110025 under' the supervision of Dr. Md. Imtaiyaz Hassan (PrincipalInvestigator).</p>

<p>Eligibility:<br />M.Sc. in any stream of Life Sciences with minimum 55% marks.</p>

<p>Desirable:<br />Candidates having experience in Molecular Spectroscopy, Protein Folding and Bioinformatics will be preferred.</p>

<p>Interested candidate may appear in the walk in Interview conducted on September 16, 2014 (Tuesday) 11:00 AM in the Director's Office, Centre for Interdisciplinary Research in Basic Sciences, lamia Millia Islamia, New Delhi-110025.<br />Candidates are required to bring a set of Xerox copy of their recent CV and qualifying degree (certificate/mark sheet) along with original documents. NoTA/DA will be paid.</p>

<p>For any further information you may e-mail to: mihassan@jmLac.in</p>

<p>Read more at http://jmi.ac.in/upload/advertisement/jobs_cirbs_2014september8.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44503/entire-human-genome-sequencing</guid>
	<pubDate>Tue, 02 Apr 2024 01:19:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44503/entire-human-genome-sequencing</link>
	<title><![CDATA[Entire Human Genome Sequencing !]]></title>
	<description><![CDATA[<p>Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalized medicine by making comprehensive genetic analysis accessible to a wider population. Through advancements in sequencing technologies, such as next-generation sequencing (NGS), costs have significantly decreased, enabling researchers and healthcare providers to analyze an individual's complete genetic makeup with greater efficiency and affordability. This has profound implications for disease diagnosis, prognosis, and treatment, as it allows for the identification of genetic predispositions and the customization of healthcare interventions based on an individual's unique genetic profile. Moreover, as the cost continues to decline, the potential for population-scale genomic studies and large-scale screening programs becomes increasingly feasible, promising to further enhance our understanding of human genetics and improve healthcare outcomes on a global scale.</p><p>Here are few companies:</p><p>https://mynucleus.com/</p><p>https://myome.com/</p><p>https://nebula.org/whole-genome-sequencing-dna-test/</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17188/jamia-hamdard-bioinformatics-faculty-jobs-2014</guid>
  <pubDate>Sat, 20 Sep 2014 21:00:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[JAMIA HAMDARD Bioinformatics Faculty Jobs 2014]]></title>
  <description><![CDATA[
<p>JAMIA HAMDARD</p>

<p>(Deemed University)</p>

<p>Hamdard Nagar, New Delhi – 110 062</p>

<p>R E C R U I T M E N T</p>

<p>(Advertisement No. 5/2014)</p>

<p>Applications on prescribed form are invited for filling up the following teaching positions in the Department of Biotechnology, Faculty of Science in the university. Eligible candidates may apply on or before 30.09.2014.</p>

<p>1. Professor/Associate Professor - One in Pay Band of Rs. 37400-67000+ AGP Rs.10000/9000</p>

<p>2. Assistant Professor                   -  Two in Pay Band of Rs. 15600-39100+ AGP Rs. 6000/-</p>

<p>ASSISTANT PROFESSOR – 02 (including 01 SFS)</p>

<p>Specialization : Bioinformatics</p>

<p>Qualification and Experience :</p>

<p>Ph.D. in Biotechnology or an allied discipline with M.Sc. in Biotechnology/ Biochemistry in the First division or equivalent grade from a recognized University/ Institute.</p>

<p>NET in Life Science or allied discipline in addition to the above qualification.</p>

<p>Experience : At  least two years of Post-doctoral teaching and/or research experience in Bioinformatics or relevant field in a UGC recognized Institution of repute or international research institute/ University.  Proof of research to be evidenced by publications in SCI-indexed journals of high impact factor as the first or corresponding author.</p>

<p>Note : University may consider exempting candidates from NET, who has been awarded Ph.D. degree from ‘A’ Grade accredited University following the procedure as notified by the UGC in its Regulations of 2009 and adopted by Jamia Hamdard.</p>

<p>For more information: http://www.jamiahamdard.ac.in/PDF/Online%20application%20form%20_Teaching_1.pdf<br />http://www.jamiahamdard.ac.in/PDF/PBAS.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44754/early-genome-screening-the-new-health-horoscope</guid>
	<pubDate>Thu, 02 Jan 2025 19:44:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44754/early-genome-screening-the-new-health-horoscope</link>
	<title><![CDATA[Early Genome Screening: The New Health Horoscope!]]></title>
	<description><![CDATA[<p>In an era where precision medicine is reshaping healthcare, genome screening is emerging as the modern equivalent of a health horoscope. It offers insights into our biological "stars," unraveling predispositions to various conditions and empowering individuals with knowledge to navigate their health journeys proactively. But how reliable is this "horoscope," and how does it impact our lives?</p><h3>Understanding Genome Screening</h3><p>Genome screening involves analyzing an individual's DNA to identify genetic variations that may influence health and disease susceptibility. This can range from simple single-gene tests to comprehensive whole-genome sequencing. By peering into our genetic blueprint, we can uncover risks for conditions like cancer, diabetes, cardiovascular diseases, and even rare genetic disorders.</p><p>The process is straightforward: a saliva or blood sample is collected, and advanced sequencing technologies decipher the genetic code. The results provide a personalized health map, guiding lifestyle modifications, preventive measures, or medical interventions.</p><h3>A Shift from Reactive to Proactive Healthcare</h3><p>Traditional healthcare often focuses on treating diseases after they manifest. Genome screening flips this model on its head, enabling a shift toward prevention and early intervention. For instance:</p><ul>
<li>
<p><strong>Cancer Risk Management</strong>: Individuals with BRCA1 or BRCA2 gene mutations can opt for enhanced screening programs or preventive surgeries to mitigate their risk of breast and ovarian cancers.</p>
</li>
<li>
<p><strong>Cardiovascular Health</strong>: Genetic predispositions to conditions like familial hypercholesterolemia can prompt early cholesterol monitoring and lifestyle adjustments.</p>
</li>
<li>
<p><strong>Rare Diseases</strong>: Identifying carriers of genetic disorders can aid in family planning and reduce the incidence of inherited conditions.</p>
</li>
</ul><h3>The Ethical and Practical Concerns</h3><p>While genome screening offers incredible promise, it is not without challenges:</p><ol>
<li>
<p><strong>Accuracy and Interpretation</strong>: Genetic predisposition does not guarantee disease. Misinterpretation of results can lead to unnecessary anxiety or unwarranted medical interventions.</p>
</li>
<li>
<p><strong>Privacy and Data Security</strong>: Genetic data is highly sensitive. Ensuring robust data protection measures is crucial to prevent misuse.</p>
</li>
<li>
<p><strong>Accessibility and Equity</strong>: High costs and limited availability may restrict access to genome screening, exacerbating health disparities.</p>
</li>
</ol><h3>Balancing Science and Pseudoscience</h3><p>The comparison of genome screening to horoscopes isn&rsquo;t entirely unfounded. Both offer predictive insights, but the scientific foundation of genome screening distinguishes it from astrology. Unlike the alignment of celestial bodies, genetic predictions are based on rigorous data and evidence. However, the probabilistic nature of genetic predispositions underscores the importance of interpreting results in conjunction with clinical and lifestyle factors.</p><h3>The Road Ahead</h3><p>As genome screening becomes more affordable and integrated into routine healthcare, its potential to transform lives is immense. Policymakers, healthcare providers, and genetic counselors must collaborate to ensure ethical implementation, public awareness, and equitable access.</p><p>Imagine a future where your genetic "horoscope" is a trusted guide, not just a prediction. Early genome screening could help chart a healthier path for generations, making it a cornerstone of personalized medicine. After all, our genes might just hold the key to unlocking a future of better health and well-being.</p><p>&nbsp;</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44902/hite-a-fast-and-accurate-dynamic-boundary-adjustment-approach-for-full-length-transposable-elements-detection-and-annotation-in-genome-assemblies</guid>
	<pubDate>Sat, 20 Sep 2025 09:34:04 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44902/hite-a-fast-and-accurate-dynamic-boundary-adjustment-approach-for-full-length-transposable-elements-detection-and-annotation-in-genome-assemblies</link>
	<title><![CDATA[HiTE: a fast and accurate dynamic boundary adjustment approach for full-length Transposable Elements detection and annotation in Genome Assemblies]]></title>
	<description><![CDATA[<p dir="auto"><code>HiTE</code>&nbsp;is a Python software that uses a dynamic boundary adjustment approach to detect and annotate full-length Transposable Elements in Genome Assemblies. In comparison to other tools, HiTE demonstrates superior performance in detecting a greater number of full-length TEs.</p>
<div dir="auto">
<h2 dir="auto">panHiTE</h2>
<a href="https://github.com/CSU-KangHu/HiTE#panhite"></a></div>
<p dir="auto">We have developed panHiTE, a comprehensive and accurate pipeline for TE detection in large-scale population genomes. It has been successfully applied to hundreds of plant population genomes, demonstrating its effectiveness and scalability.</p>
<p dir="auto">For detailed instructions, please refer to the&nbsp;<a href="https://github.com/CSU-KangHu/HiTE/wiki/panHiTE-tutorial">panHiTE tutorial</a>.</p><p>Address of the bookmark: <a href="https://github.com/CSU-KangHu/HiTE" rel="nofollow">https://github.com/CSU-KangHu/HiTE</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
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