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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29144?offset=1360</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26424/biotoolbox</guid>
	<pubDate>Fri, 19 Feb 2016 09:14:44 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26424/biotoolbox</link>
	<title><![CDATA[BioToolbox]]></title>
	<description><![CDATA[<p>This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file formats, and conversion between file formats. The Bio::ToolBox libraries provide a unified, abstracted interface to multiple common gene annotation formats and the collection of data from multiple data files. They rely on BioPerl SeqFeature libraries and related adaptors to access binary file formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic data relative to features, manipulating and analyzing data, and data format conversion.</p>
<p>More at http://cpansearch.perl.org/src/TJPARNELL/</p><p>Address of the bookmark: <a href="http://cpansearch.perl.org/src/TJPARNELL/" rel="nofollow">http://cpansearch.perl.org/src/TJPARNELL/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26439/ra-at-icar-indian-institute-of-oilseeds-research</guid>
  <pubDate>Mon, 22 Feb 2016 05:21:34 -0600</pubDate>
  <link></link>
  <title><![CDATA[RA at ICAR - INDIAN INSTITUTE OF OILSEEDS RESEARCH]]></title>
  <description><![CDATA[
<p>ICAR - INDIAN INSTITUTE OF OILSEEDS RESEARCH</p>

<p>HYDERABAD-500030</p>

<p>F.No. 5-42/2016/Rectt.</p>

<p>WALK IN INTERVIEW</p>

<p>Eligible candidates are invited to attend Walk in Interview to fill up the (purely) temporary post of Junior Research Fellow (One) under Extramural Research Project entitled “Transcriptome and proteome analysis for identification of candidate genes responsible for pistillate nature in castor “ to be held on 04.03.2016 at 11.00 AM at ICAR – Indian Institute of Oilseeds Research, Rajendranagar, Hyderabad. The tenure of the project is up to 31.03.2017. The requirement and other terms and conditions for the Junior Research Fellow are as under :-</p>

<p>Junior Research Fellow (One)</p>

<p>    Nucleic acid isolations, molecular analysis, bioinformatic analysis</p>

<p>    .M.Sc.Biotechnology/Bioinformatics</p>

<p>    Post Graduation in Life Sciences.</p>

<p>    Candidates having Post Graduate degree in Basic Sciences with 3 years Bachelor’s degree and 2 years Master’s Degree 1,2,3 should have NET qualification.</p>

<p>    Experience in Plant Biotechnology and Bioinformatics</p>

<p>    Rs.25000/- + 30% HRA per month (At present)</p>

<p>More Info : http://icar-iior.org.in/media/docs/employment/2016/jrf-int.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26537/destruct</guid>
	<pubDate>Mon, 29 Feb 2016 17:34:59 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26537/destruct</link>
	<title><![CDATA[destruct]]></title>
	<description><![CDATA[<p>Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples.</p>
<p>More at&nbsp;https://bitbucket.org/dranew/destruct</p><p>Address of the bookmark: <a href="https://bitbucket.org/dranew/destruct" rel="nofollow">https://bitbucket.org/dranew/destruct</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26571/pattern-searching-in-a-single-genome</guid>
	<pubDate>Mon, 07 Mar 2016 05:02:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26571/pattern-searching-in-a-single-genome</link>
	<title><![CDATA[Pattern Searching in a Single Genome]]></title>
	<description><![CDATA[<p>Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a number of ways of searching with in a single chromosome.</p><p>Address of the bookmark: <a href="https://www.stats.ox.ac.uk/__data/assets/pdf_file/0018/5373/LintonFinalReport.pdf" rel="nofollow">https://www.stats.ox.ac.uk/__data/assets/pdf_file/0018/5373/LintonFinalReport.pdf</a></p>]]></description>
	<dc:creator>Aasha</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/44365/program-officer-bioinformatics-at-jhpiego</guid>
  <pubDate>Tue, 29 Aug 2023 00:05:30 -0500</pubDate>
  <link></link>
  <title><![CDATA[Program Officer, Bioinformatics at Jhpiego]]></title>
  <description><![CDATA[
<p>Jhpiego is a non-profit global health leader and Johns Hopkins University affiliate that is saving lives, improving health, and transforming futures. We partner with governments, health experts, and local communities to build the skills and systems that guarantee a healthier future for women and families. Jhpiego translates the best science and practices into moments of care that can mean the difference between life and death for women and families. The moment a woman gives birth; the moment a midwife helps a newborn to breathe. Through our partnerships, we are revolutionizing health care for the world’s most disadvantaged and vulnerable people. In India, Jhpiego works across various states in close collaboration with national and state governments, providing technical assistance in the areas of family planning, maternal and child health, strengthening human resources for health, and non-communicable diseases. These programs are funded by USAID, the Bill &amp; Melinda Gates Foundation, the David &amp; Lucile Packard Foundation, the Children’s Investment Fund Foundation (CIFF), , and other anonymous donors.</p>

<p>The Program Officer, Bioinformatics, operating under the Senior Advisor for Metagenomics &amp; Lab Systems, will play a pivotal role in leveraging bioinformatics to advance the objectives of the Health Security and AMR program. This position offers a unique opportunity to contribute to cutting-edge genomics research and its application in public health.</p>

<p>More detail at https://jobs-jhpiego.icims.com/jobs/5440/program-officer-%e2%80%93-bio-informatics/job</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26877/research-fellow-bioinformatics</guid>
  <pubDate>Mon, 04 Apr 2016 05:41:21 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow Bioinformatics]]></title>
  <description><![CDATA[
<p>Research Fellow Bioinformatics<br />Eligibility : BSc(Bio-Tech), MSc(Bio-Tech)<br />Location : Ludhiana<br />Last Date : 19 Apr 2016<br />Hiring Process : Walk - In<br />Punjab Agricultural University</p>

<p>Research Fellow Bioinformatics job opportunities in Punjab Agricultural University<br />Qualification : B.Sc. with minimum OCPA 5.00/10.00 basis or 50% marks. ii. M.Sc. in Biotechnology/ Molecular Biology/Molecular Genetics/Bioinformatics/Genetics/Plant Breeding/Plant Breeding &amp; Genetics with at least 6.50/10.00 or 65% marks. iii. Ph.D. in the relevant field with minimum OCPA 6.50/10.00 or 65% marks<br />Pay Scale : Rs.24000/-<br />Application Fee : A Bank Draft of Rs. 200/- in favour of Comptroller, Punjab Agricultural University, Ludhiana <br /> <br />How to apply<br />Walk in Interview will be held on 26.09.2016 at 11:30 a.m. in the office of the Director, School of Agricultural Biotechnology. No separate information for interview will be sent. No TA/DA will be paid for attending the interview. Candidate Should apply with detailed bio data to this office latest by 19.04.2016</p>

<p>More at http://web.pau.edu/index.php?_act=manageAllBanner&amp;DO=viewAllBanner</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26925/reapr-a-universal-tool-for-genome-assembly-evaluation</guid>
	<pubDate>Wed, 06 Apr 2016 18:26:31 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26925/reapr-a-universal-tool-for-genome-assembly-evaluation</link>
	<title><![CDATA[REAPR: a universal tool for genome assembly evaluation]]></title>
	<description><![CDATA[<p>REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls.</p>
<p>The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (at least 1000bp). Additionally, if a short insert Illumina library is also available, REAPR can combine this with the large insert library in order to score each base of the assembly.</p>
<p>http://www.sanger.ac.uk/science/tools/reapr</p><p>Address of the bookmark: <a href="https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-5-r47" rel="nofollow">https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-5-r47</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/31523/research-associate-bioinformatics-recruitment-in-national-bureau-of-plant-genetic-resources</guid>
  <pubDate>Fri, 10 Mar 2017 06:50:51 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics recruitment in National Bureau of Plant Genetic Resources]]></title>
  <description><![CDATA[
<p>Name of Project  : Indo-UK Centre for improvement of Nitrogen use efficiency in wheat Dr. Soma S. Marla, Pr. Scientist (Bioinformatics), Division of Genomic Resources, ICAR, NBPGR, ND. </p>

<p>No. of Post : 01</p>

<p>Qualification : A doctoral (Ph.D). Degree in Bioinformatics OR 1. Masters degree in Bioinformatics or Computer Sciences having 1st division or 60% marks or equivalent overall grade point with at least two years of research experience as evidenced from Fellowship/ Associate ship. 2. NET or equivalent national level examination qualification is essential for the candidates with 3+2 years (B.Sc.+ M.Sc) pattern. Desirable: Demonstrated experience &amp; skills in database design, management, UNIX OS, HPC environment inbased NGS data analysis. Experience substantiated by publications of high quality will be preferred.</p>

<p>Emoluments : Rs. 40,000 (Ph.D)/ Rs + 30 % HRA; 38,000 (Masters) Degree + 30 % HRA.<br />Hiring Process : Walk - In<br />Job Role: Research/JRF/SRF</p>

<p>Candidates should appear by 10.00 AM on 16.03.2016 for registration with relevant documents in the room B4, Bioinformatics Lab, ICAR.NBPGR. old campus, Inderpuri, New Delhi.</p>

<p>The candidates who wish to attend the walk-in interview are requested to bring with them five copies of the CV (one copy with photograph) as per the format given below. Also, the candidates should bring the original documents such as DOB, degree certificates, marks sheets, publications, thesis, experience certificate etc. for verification.</p>

<p>http://www.nbpgr.ernet.in/Downloadfile.aspx?EntryId=7284</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27211/srbioinformatics-analyst-ngs-ocimumbio</guid>
  <pubDate>Mon, 02 May 2016 04:41:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Sr.Bioinformatics Analyst (NGS) @ OcimumBio]]></title>
  <description><![CDATA[
<p>Sr.Bioinformatics Analyst (NGS)</p>

<p>Experience Required: 3-5 years of experience<br />No of Positions : Multiple<br />Qualifications: Candidates with minimum qualification as M.Sc Bioinformatics with 3-5  years of experience in Life sciences R&amp;D or Pharma Industry.<br />Ph.D candidates with research experience in Bioinformatics with publications in International journal and minimum 2 years of  industry experience in clinical genomics will be preferred for this position.</p>

<p>Requirement:</p>

<p>1.  Must have basic understanding of molecular biology and Genomics.<br />2. Experience in application development or must have expertise in programming using either of Perl/Python.<br />3.  Experience in statistical programming using R/Bioconductor/Matlab.<br />4. Strong concept in statistical and mathematical modelling.<br />5.  Experience in designing and developing the bioinformatics pipeline.<br />6.  Must have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis.<br />7. Knowledge in WGS ,WES, Targeted re-sequencing,GWAS and population genomics will be preferred.<br />8. Must have experience working on opensource software/Framework and commercial software for NGS data analysis and reporting.<br />9. Should be aware of handling big data and guiding team members on multiple projects simultaneously.<br />More at http://www.ocimumbio.com/careers1/<br />10. Should have experience coordinating with different groups of clinical research scientist for various project requirements.<br />11. Ability to work as team as well as independently with minimal support.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27235/supposedly-educational-r</guid>
	<pubDate>Tue, 03 May 2016 16:43:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27235/supposedly-educational-r</link>
	<title><![CDATA[Supposedly Educational R]]></title>
	<description><![CDATA[<p>R 3.3.0 (codename &ldquo;Supposedly Educational&rdquo;)&nbsp;was <a href="http://r.789695.n4.nabble.com/R-3-3-0-is-released-td4720368.html" target="_blank">released today</a>.&nbsp;You can get the latest binaries version <strong><a href="http://cran.rstudio.com/" target="_blank">from here</a>.</strong>&nbsp;(or the .tar.gz&nbsp;<strong>source</strong> code from <a href="http://cran.r-project.org/src/base/R-3/R-3.3.0.tar.gz" target="_blank">here</a>).&nbsp;The full list of new features and bug fixes is provided below.</p><p>If you are using <strong>Windows&nbsp;</strong>you can easily upgrade to the latest version of R using <a href="http://cran.r-project.org/web/packages/installr/" target="_blank">the installr package</a>. Simply run the following code in Rgui:</p><div><table width="710">
<tbody>
<tr id="p613882">
<td id="p61388code2">
<pre><span style="color: #0000ff; font-weight: bold;">install.<span>packages</span></span><span style="color: #080;">(</span><span style="color: #ff0000;">"installr"</span><span style="color: #080;">)</span> <span style="color: #228b22;"># install </span>
setInternet2<span style="color: #080;">(</span>TRUE<span style="color: #080;">)</span>
installr<span style="color: #080;">::</span><span>updateR</span><span style="color: #080;">(</span><span style="color: #080;">)</span> <span style="color: #228b22;"># updating R.</span></pre>
</td>
</tr>
</tbody>
</table></div><p><span>Running &ldquo;updateR()&rdquo; will detect if there is a new R version available, and if so it will download+install it (etc.). There is also <a href="http://www.r-statistics.com/2015/06/a-step-by-step-screenshots-tutorial-for-upgrading-r-on-windows/" target="_blank">a&nbsp;step by step tutorial (with screenshots) on how to upgrade R on Windows, using the <em>installr</em></a>&nbsp;package. If you only see the option to upgrade to an older version of R, then change your mirror or try again in a few hours (it usually take around 24 hours for all CRAN mirrors to get the latest version of R).</span></p><p><em>I try to keep the <a href="https://github.com/talgalili/installr" target="_blank">installr</a> package updated and useful, so if you have any suggestions or remarks on the package &ndash; you are invited to <a href="https://github.com/talgalili/installr/issues" target="_blank">open an issue in the github page</a>.</em></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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