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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29270?offset=1140</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21851/bioinformatics-project-assistant-at-nitw</guid>
  <pubDate>Wed, 01 Apr 2015 01:43:27 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Project Assistant at NITW]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF TECHNOLOGY WARANGAL – 506 004</p>

<p>DEPARTMENT OF BIOTECHNOLOGY</p>

<p>No. NITW/Bio/ Date: 30th March 2015</p>

<p>ADVERTISEMENT FOR PROJECT FELLOW (Research Staff)</p>

<p>Applications are invited for the post of Project Fellow (Research Staff) for the project entitled ‘Metagenome derived nitroreductases for degradation of nitro compounds’ sponsored by the Department of Science and Technology (DST-INSPIRE), Govt. of India.</p>

<p>Position: Project Fellow (1 No.)</p>

<p>Project Duration: 5 years</p>

<p>Note: The post is purely on temporary basis for a period one year and may be extendable till the end of the project based on the progress of the candidate.</p>

<p>Emoluments: Rs. 14,000/- per month (Consolidated) for first two years and Rs. 16,000/- per month (Consolidated) for next three years.</p>

<p>Essential Qualifications:</p>

<p>i) First class in M.Tech/M.S (Biotechnology/Industrial Biotechnology/Bioinformatics) or equivalent. Or</p>

<p>ii) First class in M.Sc. (Biotechnology/Bioinformatics/Biochemistry/ Microbiology/Molecular biology).</p>

<p>Desirable Qualification: Preference will be given to candidates who have cleared NET/GATE or having prior work experience in Molecular biology/Bioinformatics sequence analysis.</p>

<p>Interested candidates may submit their application in plain paper along with Curriculum Vitae and photocopies of certificates in support of educational/professional qualifications. Application should be sent in a closed cover with a superscription on the cover “Application for the post of project fellow (DST-INSPIRE)” on or before 20.04.2015 (Monday) via Post to the Principal Investigator. Eligible candidates will be intimated through e-mail and called for interview at the Department of Biotechnology, NIT, Warangal. No TA/DA will be paid for attending the interview. Dr. K. Divakar (Principal Investigator) DST-INSPIRE Faculty Department of Biotechnology National Institute of Technology Warangal – 506 004. Telangana, India. E-mail: divakar@nitw.ac.in; kdivak@gmail.com</p>

<p>Advertisement: http://www.nitw.ac.in/nitw/announcements/2015/Notification_Project_Fellow_DST_INSPIRE_Biotechnology_NITW.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/37927/you-cant-hide-from-genome-hackers</guid>
	<pubDate>Sat, 13 Oct 2018 14:17:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/37927/you-cant-hide-from-genome-hackers</link>
	<title><![CDATA[You can't hide from Genome Hackers]]></title>
	<description><![CDATA[<p><span>Young computational biologist named Yaniv Erlich shocked the research world by showing it was possible to&nbsp;</span><a href="https://www.wired.com/2013/01/your-genome-could-reveal-your-identity/">unmask the identities</a><span>&nbsp;of people listed in anonymous genetic databases using&nbsp;</span><a href="http://science.sciencemag.org/content/339/6117/321" target="_blank">only an Internet connection</a></p><p>Paper: http://science.sciencemag.org/content/early/2018/10/10/science.aau4832</p><p>More at&nbsp;https://www.wired.com/story/genome-hackers-show-no-ones-dna-is-anonymous-anymore/</p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21930/bioinformatics-ra-at-ivri</guid>
  <pubDate>Tue, 07 Apr 2015 03:10:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics RA at IVRI]]></title>
  <description><![CDATA[
<p>A walk in interview is scheduled in the seminar hall of Veterinary Biotechnology Division of the institute on 9.04.15 at 10.30 am for the engagement of one Research associate (RA) in ICAR funded time bound project entitled “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>The engagement is purely temporary on contractual basis and co-terminus with the project. There will be no provision of absorption of absorption/reemployment in IVRI/DBT on termination of the project.</p>

<p>No TA/DA will be provided for appearing in the interview and no separate letter will be issued.</p>

<p>A. Name tile of the project: “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>B. Position/post to be filled: Research Associate (one)</p>

<p>C. Essential/Desirable qualifications:</p>

<p>•Essential: M.V.Sc./M.Tech./MSc Degree in Biotechnology/ Biochemistry/ Microbiology/Immunology/Bioinformatics/Genetics/Life Sciences or</p>

<p>Masters in Computer Application/ Masters in Computer science with first division.</p>

<p>• Desirable: Experience in cell culture, next generation sequencing, C++ and perl programming. NET/GATE qualified will be preferred.</p>

<p>• Experience : At least 2 years</p>

<p>D. Emoluments: Rs. 23000/- per month + 20% HRA</p>

<p>E. Age Limit: Maximum 40 years for men and 45 years for women</p>

<p>F. Duration of the project: Up to March 2017</p>

<p>G. Name of PI/Contact person: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Division of Veterinary Biotechnology.</p>

<p>H. Address for correspondence: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Computational Biology and Genomics facility,Division of Veterinary Biotechnology, I.V.R.I., Izatnagar – 243122</p>

<p>Advertisement: www.ivri.nic.in/jobs/WalkIn_interview_01042015.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38215/pwhatshap-a-parallel-high-performance-version-of-whatshap</guid>
	<pubDate>Wed, 14 Nov 2018 08:20:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38215/pwhatshap-a-parallel-high-performance-version-of-whatshap</link>
	<title><![CDATA[pWhatsHap: a parallel, high-performance version of WhatsHap]]></title>
	<description><![CDATA[<div id="ASec4">
<p>Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered&nbsp;pWhatsHap, a parallel, high-performance version of&nbsp;WhatsHap.&nbsp;pWhatsHap&nbsp;is embedded in a toolkit developed in Python and supports genomics datasets in standard file formats. Building on&nbsp;WhatsHap,&nbsp;pWhatsHap&nbsp;exhibits the same complexity exploring a number of possible solutions which is exponential in the coverage of the dataset. The parallel implementation on multi-core architectures allows for a relevant reduction of the execution time for haplotyping, while the provided results enjoy the same high accuracy as that provided by&nbsp;WhatsHap, which increases with coverage.</p>
</div>
<p>https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1170-y</p><p>Address of the bookmark: <a href="https://bitbucket.org/whatshap/whatshap" rel="nofollow">https://bitbucket.org/whatshap/whatshap</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22066/jrf-bioinformatics-national-institute-of-immunology-new-delhi-110067</guid>
  <pubDate>Fri, 17 Apr 2015 02:39:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ NATIONAL INSTITUTE OF IMMUNOLOGY  NEW DELHI-110067]]></title>
  <description><![CDATA[
<p>Applications are invited for the position of Junior Research Fellow (Project)/Senior Research Fellow (Project) for the following time-bound sponsored project as per the details given below:</p>

<p>1. “Development of bioinformatics methods for identifying novel secondary metabolites by genome mining” funded by DBT</p>

<p>JRF (P)/SRF (P) (One Position only)</p>

<p>Dr. Debasisa Mohanty Staff Scientist-VI deb@nii.res.in</p>

<p>Educational Qualifications: JRF (Project): M.Sc (Bioinformatics/ Biophysics/Biotechnology or any other stream of biological/physical sciences) or M.Tech. (Bioinformatics/Biotechnology/Computational Sciences) of M. Pharm.</p>

<p>SRF (Project): M.Sc (Bioinformatics/Biophysics/Biotechnology or any other stream of biological/physical sciences) or M.Tech. (Bioinformatics/Biotechnology/Computational Sciences) of M. Pharm with atleast 03 years of research experience.</p>

<p>Desirable Qualifications: Strong computer programming skills (in PERL/CGI/PHP or C++ or object oriented database management systems like MySQL etc or scripting languages under LINUX/UNIX environment) and sufficient experience in computational analysis of biological/biochemical data.</p>

<p>The candidates must highlight their experience in programming and database development in their CV. Job description: Computational analysis of genomes and development of bioinformatics tools and software’s for sequence and structure based analysis of biosynthetic pathways.</p>

<p>Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications &amp; experience JRF (Project): Rs. 12,000/- per month plus 30% HRA SRF (Project): Rs. 14,000/- per month plus 30% HRA (*Candidates possessing qualifications as per latest DST OM, will be given revised scales). </p>

<p>More at http://www1.nii.res.in/sites/default/files/projectappointments-Dr.DebasisaMohanty-30April2015.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38515/genome-annotation-using-maker-tutorial</guid>
	<pubDate>Thu, 20 Dec 2018 17:39:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38515/genome-annotation-using-maker-tutorial</link>
	<title><![CDATA[Genome Annotation using MAKER tutorial !]]></title>
	<description><![CDATA[<p><a href="http://www.yandell-lab.org/software/maker.html">MAKER</a><span>&nbsp;is a great tool for annotating a reference genome using empirical and&nbsp;</span><em>ab initio</em><span>gene predictions.&nbsp;</span><a href="http://gmod.org/wiki/Main_Page">GMOD</a><span>, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a&nbsp;</span><em>de novo</em><span>&nbsp;genome annotation for&nbsp;</span><em>Boa constrictor</em><span>&nbsp;in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.</span></p><p>Address of the bookmark: <a href="https://www.biostars.org/p/261203/" rel="nofollow">https://www.biostars.org/p/261203/</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22026/igib-recruitment-2015-%E2%80%93-project-scientist</guid>
  <pubDate>Tue, 14 Apr 2015 12:19:59 -0500</pubDate>
  <link></link>
  <title><![CDATA[IGIB Recruitment 2015 – Project Scientist]]></title>
  <description><![CDATA[
<p>IGIB Recruitment 2015 – Project Scientist &amp; SPF Posts: CSIR – Institute of Genomics &amp; Integrative Biology (IGIB) has issued notification for the recruitment of Project Scientist, Sr Project Fellow vacancies on temporary basis for project entitled “Setting up of CSIR(unit)-TRISUTRA (Translational research and Innovative Science through Ayurgenomics)”. Eligible candidates may apply in prescribed application format on or before 23-04-2015. Other details like age limit, educational qualification, selection process &amp; how to apply are given below…</p>

<p>IGIB Vacancy Details:<br />Total No. of Posts: 04<br />Name of the Posts:<br />1. Project Scientist (Biology): 02 Posts<br />2. Project Scientist (Bioinformatics): 01 Post<br />3. Sr Project Fellow (Ayurveda): 01 Post</p>

<p>Age Limit: Candidates age should be 35 years for post 1, 32 years for post 2</p>

<p>Educational Qualification: Candidates should have Ph.D/ Ph.D submitted in any branch of Biological Science/ Life Science for post 1, Ph.D/ Ph.D submitted in Bioinformatics for post 2, BAMS degree with one year internship for post 3.</p>

<p>Selection Process: Candidates will be selected based on their performance in interview.</p>

<p>How to Apply: Eligible candidates may send their application along with all relevant documents on or before 23-04-2015.</p>

<p>Important Dates:<br />Last Date for Receipt of Application for Post 1 &amp; 2: 23-04-2015.<br />Date of Interview for Post 3: 27-04-2015.</p>

<p>For other details like pay scale, age relaxation, educational qualification, selection process, how to apply, etc., click on the link given below…</p>

<p>http://www.freejobalert.com/wp-content/uploads/2015/03/Notification-IGIB-Project-Scientist-SPF-Posts.pdf</p>

<p>http://www.igib.res.in/sites/default/files/27042015.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38801/genome-assembly-forensics-finding-the-elusive-mis-assembly</guid>
	<pubDate>Sat, 26 Jan 2019 18:02:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38801/genome-assembly-forensics-finding-the-elusive-mis-assembly</link>
	<title><![CDATA[Genome assembly forensics: finding the elusive mis-assembly]]></title>
	<description><![CDATA[<p><span>We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their implementation in our automated validation pipeline, called&nbsp;</span><em>amosvalidate</em><span>. We demonstrate the application of our pipeline in both bacterial and eukaryotic genome assemblies, and highlight several assembly errors in both draft and finished genomes. The software described is compatible with common assembly formats and is released, open-source, at&nbsp;</span><a href="http://amos.sourceforge.net/" target="_blank">http://amos.sourceforge.net</a><span>.</span></p>
<p>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397507/&nbsp;</p>
<p>http://amos.sourceforge.net/wiki/index.php/AMOS</p><p>Address of the bookmark: <a href="http://amos.sourceforge.net/wiki/index.php/AMOS" rel="nofollow">http://amos.sourceforge.net/wiki/index.php/AMOS</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/22047/binc-sample-question-paper</guid>
	<pubDate>Thu, 16 Apr 2015 09:14:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/22047/binc-sample-question-paper</link>
	<title><![CDATA[BINC Sample Question Paper !!!]]></title>
	<description><![CDATA[<p>BINC sample question paper round TWO.</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/22047" length="1621" type="text/plain" />
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39626/geval-genome-evaluation-browser</guid>
	<pubDate>Tue, 18 Jun 2019 05:39:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39626/geval-genome-evaluation-browser</link>
	<title><![CDATA[gEVAL: Genome Evaluation Browser]]></title>
	<description><![CDATA[<p>The&nbsp;<strong>gEVAL Browser</strong>&nbsp;allows the evaluation of genome assemblies through its tools and pre-computed analyses.</p>
<p>The strength of this browser is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing potential solutions for these issues.</p>
<p>This facilitates the improvement of overall assemblies to a &ldquo;gold&rdquo; standard for release as reference genomes</p><p>Address of the bookmark: <a href="https://geval.sanger.ac.uk/index.html" rel="nofollow">https://geval.sanger.ac.uk/index.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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