<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29276?offset=1490</link>
	<atom:link href="https://bioinformaticsonline.com/related/29276?offset=1490" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/22569/reverse-complement-problem-solved-with-perl</guid>
	<pubDate>Tue, 09 Jun 2015 23:37:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/22569/reverse-complement-problem-solved-with-perl</link>
	<title><![CDATA[Reverse Complement Problem Solved with Perl]]></title>
	<description><![CDATA[<p>Question at http://rosalind.info/problems/1b/</p><p>#Find the reverse complement of a DNA string.<br />#Given: A DNA string Pattern.<br />#Return: Pattern, the reverse complement of Pattern.<br /><br />use strict;<br />use warnings;<br /><br />my $string="AAAACCCGGT";<br />my $finalString="";<br />my %hash = (<br />&nbsp;&nbsp; &nbsp;"C" =&gt; "G", <br />&nbsp;&nbsp; &nbsp;"A" =&gt; "T", <br />&nbsp;&nbsp; &nbsp;"T" =&gt; "A", <br />&nbsp;&nbsp; &nbsp;"G" =&gt; "C",<br />);<br /><br />for (my $aa=0; $aa&lt;=(length($string)-1); $aa++) {<br />&nbsp;&nbsp; &nbsp;my $char=substr $string, $aa, 1;<br />&nbsp;&nbsp; &nbsp;#print $hash{$char};<br />&nbsp;&nbsp; &nbsp;$finalString="$hash{$char}"."$finalString";<br />}<br /><br />print $finalString;<br />print "\n";</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39039/dotplotly-generate-an-interactive-dot-plot-from-mummer-or-minimap-alignments</guid>
	<pubDate>Thu, 21 Feb 2019 10:22:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39039/dotplotly-generate-an-interactive-dot-plot-from-mummer-or-minimap-alignments</link>
	<title><![CDATA[dotPlotly: Generate an interactive dot plot from mummer or minimap alignments]]></title>
	<description><![CDATA[<p>Create an interactive dot plot from mummer output OR PAF format</p>
<p>R script that makes a plotly interactive and/or static (png/pdf) dot plot.</p>
<p><a href="https://tom-poorten.shinyapps.io/dotplotly_shiny/">Shiny app available for testing</a></p><p>Address of the bookmark: <a href="https://github.com/tpoorten/dotPlotly" rel="nofollow">https://github.com/tpoorten/dotPlotly</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22580/appointment-of-two-traineeships-and-two-studentships-in-bioinformatics</guid>
  <pubDate>Wed, 10 Jun 2015 10:19:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[Appointment of two traineeships and two studentships in Bioinformatics]]></title>
  <description><![CDATA[
<p>Jawaharlal Nehru<br />TROPICAL BOTANIC GARDEN AND RESEARCH INSTITUTE<br />An organization under the Kerala State Council for Science, Technology and Environment and<br />National Centre of Excellence, Government of India<br /> <br />Applications are invited for the appointment of two traineeships and two studentships in Bioinformatics for a period of six months sponsored by Department of Biotechnology, Government of India in the Bioinformatics Sub-DIC, Saraswathy Thangavelu Centre, JNTBGRI, Puthenthope, Thiruvananthapuram 695 586. The required qualifications and other details are given below.</p>

<p>Monthly fellowship (in rupee): 5,000/-<br />	<br />Traineeship<br />	<br />First Class M.Sc Bioinformatics/ Biotechnology/ Botany<br />	<br />Studentship: 5,000/-<br />	<br />M.Phil/M.Tech Bioinformatics/ Biotechnology/ any branch of Life Science students for doing their thesis work in the area of Bioinformatics.</p>

<p>Age limit as on 1.1.2015, 28 years. Age relaxation will be provided for SC, ST, OBC candidates as per Govt. norms.</p>

<p>Interested candidates may appear for walk-in-interview on 16th June 2015 at 10.30 am at JNTBGRI, Palode, Thiruvananthapuram. The candidate should report to the Office at Palode before 10.00 am</p>

<p>More at http://www.jntbgri.in/jntbgri/news/File0001.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43319/k-mers-tutorial-classification-and-taxonomy</guid>
	<pubDate>Thu, 26 Aug 2021 10:28:43 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43319/k-mers-tutorial-classification-and-taxonomy</link>
	<title><![CDATA[k-mers tutorial - classification and taxonomy]]></title>
	<description><![CDATA[<p>DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to&nbsp;<a href="http://www.pnas.org/content/109/33/13272">store k-mer graphs efficiently</a>,&nbsp;<a href="http://ivory.idyll.org/blog/what-is-diginorm.html">discard redundant data</a>, and&nbsp;<a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101271">count them efficiently</a>.</p>
<p>More recently, we've been enthused about&nbsp;<a href="http://joss.theoj.org/papers/3d793c6e7db683bee7c03377a4a7f3c9">using k-mer based similarity measures</a>&nbsp;and&nbsp;<a href="http://ivory.idyll.org/blog/2016-sourmash-sbt.html">computing and searching k-mer-based sketch search databases for all the things</a>.</p>
<p>But I haven't spent too much talking about using k-mers for taxonomy, although that has become an&nbsp;<em>ahem</em>&nbsp;area of interest recently,&nbsp;<a href="http://www.biorxiv.org/content/early/2017/07/03/155358">if you read into our papers a bit</a>.</p>
<p>In this blog post I'm going to fix this by doing a little bit of a literature review and waxing enthusiastic about other people's work. Then in a future blog post I'll talk about how we're building off of this work in fun! and interesting? ways!</p><p>Address of the bookmark: <a href="http://ivory.idyll.org/blog/2017-something-about-kmers.html" rel="nofollow">http://ivory.idyll.org/blog/2017-something-about-kmers.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22778/sr-research-fellow-technical-asst-at-indian-institute-of-maize-research-india</guid>
  <pubDate>Wed, 17 Jun 2015 18:47:51 -0500</pubDate>
  <link></link>
  <title><![CDATA[Sr Research Fellow &amp; Technical Asst at Indian Institute of Maize Research - India]]></title>
  <description><![CDATA[
<p>Indian Institute of Maize Research Jobs 2015 –</p>

<p>Sr Research Fellow &amp; Technical Asst Posts: Indian Institute of Maize Research (IIMR), New Delhi has advertised a notification for the recruitment of Senior Research Fellow &amp; Technical Assistant vacancies for the project titled “Genetic modifications to improve biological nitrogen fixation for augmenting nitrogen needs of cereals” on contractual basis. Eligible candidates may apply in prescribed application format on or before 25-06-2015. Other details like age, educational qualification, selection process, how to apply are given below…</p>

<p>Indian Institute of Maize Research Vacancy Details:<br />Total No. of Posts: 03<br />Name of the Posts :<br />1. Senior Research Fellow: 02 Posts<br />2. Technical Assistant: 01 Post</p>

<p>Age Limit: Candidates age should be 35 years for Senior Research Fellow, Minimum 21 years and maximum 45 years for Technical Assistant as on the closing date of the application. Age relaxation is 5 years to SC/ST and women candidates and 3 years to OBC candidates as per ICAR rules.</p>

<p>Educational Qualification: Candidates should possess Post graduate degree in Biotechnology/ Molecular Biology/ Bioinformatics/ Plant physiology for Senior Research fellow, Graduate degree in Agriculture/ Biotechnology/ any discipline of life sciences for Technical Assistant with relevant experience.</p>

<p>Selection Process: Candidates will be selected based on their performance in interview.</p>

<p>How to Apply: Eligible candidates can send their application in prescribed format along with bio-data to Dr. Pranjal Yadava, Principal Investigator, ICAR Indian Institute of Maize Research, Pusa Campus, New Delhi-110012 or mail to pranjal.yadava@gmail.com on or before 25-06-2015 &amp; attend the interview along with application in the attached format at the time of interview, one passport size photograph, self attested copies of certificates for age, and qualifications, reprints of publications and ‘No Objection Certificate’, original documents on 01-07-2015. Venue details are mentioned below.</p>

<p>Important Dates:<br />Last Date for Receipt of Application: 25-06-2015<br />Date &amp; Time of Interview : 01-07-2015.<br />Venue: IIMR, Pusa Campus, New Delhi</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44362/biostats-book</guid>
	<pubDate>Mon, 14 Aug 2023 03:11:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44362/biostats-book</link>
	<title><![CDATA[Biostats book !]]></title>
	<description><![CDATA[<p>https://practical-stats-med-r.netlify.app/</p><p>Address of the bookmark: <a href="https://practical-stats-med-r.netlify.app/" rel="nofollow">https://practical-stats-med-r.netlify.app/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22787/senior-technical-assistant-at-pondicherry-university</guid>
  <pubDate>Wed, 17 Jun 2015 20:46:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Technical Assistant at Pondicherry University]]></title>
  <description><![CDATA[
<p>Senior Technical Assistant</p>

<p>Eligibility : BE/B.Tech(CSE, ECE, IT)</p>

<p>Location : Pondicherry</p>

<p>Last Date : 26 Jun 2015</p>

<p>Hiring Process : Face to Face Interview<br />Pondicherry University - Job DetailsDate of posting:19 May 15</p>

<p>Senior Technical Assistant Job position in Pondicherry University on temporary basis  </p>

<p>Project Title : "Bioinformatics National Certification (BINC) for certifying quality human resource in Bioinformatics"</p>

<p>Qualification : i) B.E/ B.Tech Computer Science/ Electronics &amp; Communication Engineering/ Information Technology with 55% or equivalent marks. ii) One year Experience in relevant field in Government/ Public Sector or reputed Private Organizations. Desirable : Working experience in JSP and ASP/PHP</p>

<p>No. of Post : 01</p>

<p>Department : Biotechnology</p>

<p>Pay : Rs. 27,800/- </p>

<p>Age Limit : 30 Yrs<br />How to apply</p>

<p>Both above-mentioned posts are purely on temporary basis, extended by one year based on performance and will be terminated with the completion of BINC Program at Pondicherry University. Interested Candidates may send their application in the prescribed format with self-attested copies of all mark sheets and certificates to Dr. Basant K. Tiwary, Coordinator (BINC), Centre for Bioinformatics, Pondicherry University, Puducherry-605 014 before June 26, 2015.</p>

<p>Click Here http://www.pondiuni.edu.in/news/requirement-post-one-senior-technical-assistant-one-computer-assistant-–-dept-biotechnologygove</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34594/synima-synteny-imaging-tool</guid>
	<pubDate>Sun, 10 Dec 2017 17:03:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34594/synima-synteny-imaging-tool</link>
	<title><![CDATA[Synima: Synteny Imaging tool]]></title>
	<description><![CDATA[<p><span>Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for their use. Synima has a range of graphical parameters including size, colours, order, and labels, which are specified in a config file generated by the first run of Synima &ndash; and can be subsequently edited. Synima runs quickly on a command line to generate informative and publication quality figures. Synima is open source and freely available from&nbsp;</span><span><a href="https://github.com/rhysf/Synima"><span>https://github.com/rhysf/Synima</span></a></span><span>&nbsp;under the MIT License.</span></p><p>Address of the bookmark: <a href="https://github.com/rhysf/Synima" rel="nofollow">https://github.com/rhysf/Synima</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/22920/how-long-have-you-been-a-bioinformatics-scientist-for</guid>
	<pubDate>Tue, 23 Jun 2015 10:55:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/22920/how-long-have-you-been-a-bioinformatics-scientist-for</link>
	<title><![CDATA[How long have you been a bioinformatics scientist for?]]></title>
	<description><![CDATA[<p>Most of the researcher have been a scientist whole life, but infact they actually started paying&nbsp; it with at certain time.So, how long have you been in bioinformatics domain now?</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34920/xmatchview-smith-waterman-alignment-visualization</guid>
	<pubDate>Thu, 28 Dec 2017 09:00:58 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34920/xmatchview-smith-waterman-alignment-visualization</link>
	<title><![CDATA[xmatchview: smith-waterman alignment visualization]]></title>
	<description><![CDATA[<p><span>xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and xmatchview-conifer are written in python and run on linux and windows. They serve as visual tools for analyzing cross_match alignments. Cross_match (Green, P. (1994)&nbsp;</span><a href="http://www.phrap.org/">http://www.phrap.org</a><span>) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive.</span></p>
<p><span>http://www.bcgsc.ca/platform/bioinfo/software/xmatchview</span></p><p>Address of the bookmark: <a href="https://github.com/warrenlr/xmatchview" rel="nofollow">https://github.com/warrenlr/xmatchview</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

</channel>
</rss>