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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29276?offset=540</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22616/research-associate-manit-allahabad-uttar-pradesh</guid>
  <pubDate>Fri, 12 Jun 2015 05:44:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate MANIT - Allahabad, Uttar Pradesh]]></title>
  <description><![CDATA[
<p>Applications are invited from Indian nationals for the post of Research Assistant (on contract) in research project entitled “Identification of novel drug targets in Aspergillus fumigatus genome prioritized by essentiality based screening and rational designing of new antifungal compounds” sanction order no. CST/238 dated 12/05/2015 sponsored by Council of Science and Technology U.P. </p>

<p>The duly completed application on prescribed format along with copies of supporting documents must reach to: Office of the Dean (Research &amp; Consultancy), Motilal Nehru National Institute of Technology, Allahabad-211004 on or before 03/07/2015. </p>

<p>The position is purely temporary and will be governed by the funding agency rules &amp; service conditions of Office of the Dean (Research &amp; Consultancy), MNNIT Allahabad. </p>

<p>For detail advertisement see: www.mnnit.ac.in/images/newstories/Advertisement_for_the_post_of_Research_Assistant_in_UPCST_Project_of_Biotechnology_Department.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44182/collection-of-graph-visualization-tools</guid>
	<pubDate>Wed, 25 Jan 2023 02:57:42 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44182/collection-of-graph-visualization-tools</link>
	<title><![CDATA[Collection of Graph Visualization tools !]]></title>
	<description><![CDATA[<p>Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this reference are hard to observe and describe in a coherent way. Variation and sequence are separated.</p>
<p><a href="https://pangenome.github.io/images/genomic-vs-pangenomic-analysis.png"><img src="https://pangenome.github.io/images/genomic-vs-pangenomic-analysis.png" alt="image" width="45%" style="border: 0px; border: 0px;"></a><span>&nbsp;</span><a href="https://pangenome.github.io/images/genomic-vs-pangenomic-models.png"><img src="https://pangenome.github.io/images/genomic-vs-pangenomic-models.png" alt="image" width="54%" style="border: 0px; border: 0px;"></a></p>
<p><a href="https://fungidb.org/fungidb/app/downloads/Current_Release/GultimumBR650/" target="_blank">https://fungidb.org/fungidb/app/downloads/Current_Release/GultimumBR650/</a></p><p>Address of the bookmark: <a href="https://pangenome.github.io/" rel="nofollow">https://pangenome.github.io/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22779/research-associate-at-international-centre-for-genetic-engineering-and-biotechnology-icgeb</guid>
  <pubDate>Wed, 17 Jun 2015 18:49:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate at International Centre for Genetic Engineering and Biotechnology (ICGEB)]]></title>
  <description><![CDATA[
<p>Research Associate<br />International Centre for Genetic Engineering and Biotechnology (ICGEB)<br />Address: Aruna Asaf Ali Marg, Jawaharlal Nehru University, New Delhi<br />Postal Code: 110067<br />City: New Delhi<br />State: Delhi<br />Qualifications: Experience in many docking softwares and operating systems is essential. Additional experience in bioinformatics and computational biology tools will be useful.<br />Details will be available at: http://www.icgeb.org/vacancies.html<br /> <br />How To Apply: Submit curriculum vitae to: sb.icgeb@gmail.com<br />Last Date: 5 July 2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</guid>
	<pubDate>Thu, 18 May 2017 05:31:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32855/maf2synteny</link>
	<title><![CDATA[maf2synteny]]></title>
	<description><![CDATA[<p>A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)</p>
<p>This tool is a standalone version of Ragout module [<a href="http://fenderglass.github./Ragout">http://fenderglass.github./Ragout</a>]</p><p>Address of the bookmark: <a href="https://github.com/fenderglass/maf2synteny" rel="nofollow">https://github.com/fenderglass/maf2synteny</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22788/research-associate-bioinformatics-job-position-in-indian-agricultural-statistics-research-institute-iasri-pusa-new-delhi</guid>
  <pubDate>Wed, 17 Jun 2015 20:48:40 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics job position in Indian Agricultural Statistics Research Institute (IASRI), Pusa, New Delhi]]></title>
  <description><![CDATA[
<p>Research Associate Statistics</p>

<p>Eligibility : M Phil / Phd, MSc</p>

<p>Location : Delhi</p>

<p>Last Date : 27 Jun 2015</p>

<p>Hiring Process : Walk - In<br />Indian Agricultural Statistics Research Institute (IASRI) - Job DetailsDate of posting:03 Jun 15</p>

<p>Research Associate Statisticsjob position in Indian Agricultural Statistics Research Institute (IASRI)<br />on purely contractual temporary basis</p>

<p>Project : “ICAR-Network Project of Transgenic in Crops”</p>

<p>Qualification : Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent OR Post-Graduation in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent with 1st Division or 60% marks or equivalent with at least two years of research experience.</p>

<p>No.of Post: 01</p>

<p>Emoluments for RA: Consolidated Rs. 24000/- per month + 30% HRA for Ph.D holders and consolidated Rs. 23000/- per month + 30% HRA for Master Degree.</p>

<p>Age Limit : 40 years<br />How to apply</p>

<p>Walk-in-interview will be held on 27th June 2015, 10.30 A.M at IASRI, Pusa, New Delhi</p>

<p>More at http://iasri.res.in/employment/employment.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41694/mercator-multiple-whole-genome-orthology-map-construction</guid>
	<pubDate>Tue, 19 May 2020 16:46:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41694/mercator-multiple-whole-genome-orthology-map-construction</link>
	<title><![CDATA[Mercator: Multiple Whole-Genome Orthology Map Construction]]></title>
	<description><![CDATA[<p><span>Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are believed to have evolved from the same region in an ancestral genome. However, it has been pointed out that this use of the term is incorrect (</span><a href="https://www.biostat.wisc.edu/~cdewey/mercator/#refSynteny">Passarge et al. 1999</a><span>) and thus we will use the terms "homologous", "orthologous", and "paralogous" instead. Ideally, given K genomes, we would like to identify all orthologous genomic regions as well as paralogous regions within each genome and hypothetical ancestral genome. Maps listing these relationships are extremely valuable to researchers performing comparative analyses of genomic sequence. Here we present our initial work in the form a program called&nbsp;</span><em>Mercator</em><span>&nbsp;that constructs orthology maps between multiple whole genomes.</span></p><p>Address of the bookmark: <a href="https://www.biostat.wisc.edu/~cdewey/mercator/" rel="nofollow">https://www.biostat.wisc.edu/~cdewey/mercator/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22944/icgeb-bioinformatics-research-associate-vacancy</guid>
  <pubDate>Thu, 25 Jun 2015 20:41:00 -0500</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics Research Associate Vacancy]]></title>
  <description><![CDATA[
<p>Research Associate Position at ICGEB, New Delhi with Dr. Amit Sharma</p>

<p>Starting 15th July 2015, the position relates to a project specifically for in silico drug docking, screening, design, optimisation and linkage with active chemists. </p>

<p>Experience in many docking softwares and operating systems is essential. </p>

<p>Additional experience in bioinformatics and computational biology tools will be useful. </p>

<p>Submit curriculum vitae to: sb.icgeb@gmail.com</p>

<p>Closing date: 5 July 2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39881/apollo-a-sequence-annotation-editor</guid>
	<pubDate>Tue, 27 Aug 2019 08:08:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39881/apollo-a-sequence-annotation-editor</link>
	<title><![CDATA[Apollo: a sequence annotation editor]]></title>
	<description><![CDATA[<p><span>The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological experts to refine these approximations by viewing and independently evaluating the data supporting each annotation. Apollo was developed to meet this need, enabling curators to inspect genome annotations closely and edit them</span></p><p>Address of the bookmark: <a href="https://genomebiology.biomedcentral.com/articles/10.1186/gb-2002-3-12-research0082" rel="nofollow">https://genomebiology.biomedcentral.com/articles/10.1186/gb-2002-3-12-research0082</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23384/research-scientist-at-dupont</guid>
  <pubDate>Fri, 17 Jul 2015 20:36:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Scientist at DuPONT]]></title>
  <description><![CDATA[
<p>Research Scientist<br />Hyderabad, Telangana<br />Job Description</p>

<p>Job Description</p>

<p>The Global Trait Discovery Informatics (GTDI) group located at the DuPont Knowledge Centre (DKC), Hyderabad, India is currently seeking applications for a highly motivated computational biologist. The GTDI group contributes to research programs in plant biotechnology at the DKC as well as across research centers located in DuPont Pioneer, Johnston, Iowa and at the DuPont Experimental Station in Wilmington, Delaware.</p>

<p>We are looking for candidates who have experience in analysis of high-throughput -omics datasets. The researcher will be primarily responsible for analyzing diverse -omics datatypes, such as transcriptomics, proteomics and metabolomics and actively contribute towards building streamlined solutions.</p>

<p>The candidate will be part of a diverse team of experimental biologists, computational biologists and software developers. A critical aspect of this position involves working with global teams across multiple locations and will require effective project coordination and communication skills. This is an exciting opportunity for candidates with strong data driven skills, who want to work at the interface of computational and experimental biology and contribute towards scientific discovery.</p>

<p>Responsibilities</p>

<p>·Integrate and analyze multiple datatypes in the context of experimental observations with a goal towards formulating testable hypothesis.</p>

<p>·Understanding the research questions from experimental biologists and formulate relevant in silico analyses.</p>

<p>·Establish and implement systematic analysis workflows starting from processing of raw data to biological interpretation.</p>

<p>·Critically analyze a wide variety of experimental data with a view to solving the underlying research questions.</p>

<p>·Identify and generate datasets for scientific testing and evaluation of algorithms.</p>

<p>Qualifications</p>

<p>PhD in computational biology, bioinformatics, population genetics, complex systems, computer sciences or any relevant physical or mathematical sciences, with experience in analyzing diverse -omics datasets.</p>

<p>Job Qualifications</p>

<p>Qualifications</p>

<p>PhD in computational biology, bioinformatics, population genetics, complex systems, computer sciences or any relevant physical or mathematical sciences, with experience in analyzing diverse -omics datasets.</p>

<p>More at http://careers.dupont.com/jobsearch/job-details/research-scientist/006077W-01/</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42148/chromatiblock-scalable-whole-genome-visualisation-of-structural-changes-in-prokaryotes</guid>
	<pubDate>Sat, 22 Aug 2020 05:17:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42148/chromatiblock-scalable-whole-genome-visualisation-of-structural-changes-in-prokaryotes</link>
	<title><![CDATA[chromatiblock: Scalable, whole-genome visualisation of structural changes in prokaryotes]]></title>
	<description><![CDATA[<p>To create a fresh environment for chromatiblock to run in do:</p>
<pre><code>conda create --name chromatiblock
conda activate chromatiblock
conda install chromatiblock --channel conda-forge --channel bioconda
</code></pre>
<p>Then in future to run chromatiblock you can reactivate this environemtn using&nbsp;<code>conda activate chromatiblock</code></p>
<h4><a href="https://github.com/mjsull/chromatiblock#direct-download"></a>Direct download:</h4>
<p>Alternatively you can download and run the script from&nbsp;<a href="https://github.com/mjsull/chromatiblock/releases/download/v0.4.1/chromatiblock">here</a>.</p><p>Address of the bookmark: <a href="https://github.com/mjsull/chromatiblock" rel="nofollow">https://github.com/mjsull/chromatiblock</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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