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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29382?offset=610</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43867/genomeqc-a-quality-assessment-tool-for-genome-assemblies-and-gene-structure-annotations</guid>
	<pubDate>Thu, 19 May 2022 04:29:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43867/genomeqc-a-quality-assessment-tool-for-genome-assemblies-and-gene-structure-annotations</link>
	<title><![CDATA[GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations]]></title>
	<description><![CDATA[<p><span>The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at&nbsp;</span><a href="https://genomeqc.maizegdb.org/">https://genomeqc.maizegdb.org/</a><span>&nbsp;under the GPL license. All source code and a containerized version of the GenomeQC pipeline is available in the GitHub repository&nbsp;</span><a href="https://github.com/HuffordLab/GenomeQC">https://github.com/HuffordLab/GenomeQC</a><span>.</span></p>
<p>https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6568-2</p><p>Address of the bookmark: <a href="https://github.com/HuffordLab/GenomeQC" rel="nofollow">https://github.com/HuffordLab/GenomeQC</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10460/assistant-professor-at-jawaharlal-nehru-university-in-delhi</guid>
  <pubDate>Wed, 07 May 2014 00:29:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Assistant Professor at Jawaharlal Nehru University in Delhi]]></title>
  <description><![CDATA[
<p>Advt. No. RC/48/2014</p>

<p>SCHOOL OF COMPUTATIONAL AND INTEGRATIVE SCIENCES (SC&amp;IS)</p>

<p>ESSENTIAL QUALIFICATION : - M.Sc./M.Tech. in Physics/ Chemistry/ Biology/ Mathematics/ Statistics/ Bioinformatics/ Computational Biology. Ph.D. in the broad areas of Bioinformatics/ Computational Biology. Candidates must have demonstrated capabilities in terms of high impact research publications in either of the above mentioned areas.</p>

<p>Scale of Pay : - 15600-39100/- (PB-III) AGP Rs. 6000/-</p>

<p>For more details on Centre/School, Specializations etc. please visit JNU website www.jnu.ac.in or contact Section Officer, Room Nos. 131-132, Recruitment Cell, Administrative Block, JNU, New Delhi – 110067, Email: recruitmentjnu2013@gmail.com The last date for the receipt of application is 15 May, 2014.</p>

<p>http://www.jnu.ac.in/Career/</p>

<p>http://www.jnu.ac.in/Career/ADVTNo_RC_48_2014.pdf<br />Last Apply Date:</p>

<p>15 May 2014</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44373/mitohifi-a-python-pipeline-for-mitochondrial-genome-assembly-from-pacbio-high-fidelity-reads</guid>
	<pubDate>Tue, 05 Sep 2023 07:31:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44373/mitohifi-a-python-pipeline-for-mitochondrial-genome-assembly-from-pacbio-high-fidelity-reads</link>
	<title><![CDATA[MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads]]></title>
	<description><![CDATA[<p dir="auto">MitoHiFi v3.2 is a python pipeline distributed under&nbsp;<a href="https://github.com/marcelauliano/MitoHiFi/blob/master/LICENSE">MIT License</a>&nbsp;!</p>
<p dir="auto">MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project (DToL)</p>
<p dir="auto">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05385-y&nbsp;</p>
<p dir="auto"><a href="https://github.com/marcelauliano/MitoHiFi/blob/master/docs/dtol-logo-round-300x132.png" target="_blank"><img src="https://github.com/marcelauliano/MitoHiFi/raw/master/docs/dtol-logo-round-300x132.png" alt="" style="border: 0px; border: 0px;"></a></p><p>Address of the bookmark: <a href="https://github.com/marcelauliano/MitoHiFi" rel="nofollow">https://github.com/marcelauliano/MitoHiFi</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/10749/memories-can-be-passed-down-through-dna</guid>
	<pubDate>Sat, 10 May 2014 21:24:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/10749/memories-can-be-passed-down-through-dna</link>
	<title><![CDATA[Memories Can Be Passed Down Through DNA]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/tbPwzII_g6o" frameborder="0" allowfullscreen></iframe>The premise of Assassin's Creed is the reliving of other people's memories stored inside DNA. Well scientists have found that in mice, it actually happens! Anthony is joined by special guest and our friend Tara Long from Hard Science to explain how this process works, and if it might apply to humans as well.

Read More: 
Parental olfactory experience influences behavior and neural structure in subsequent generations
http://www.nature.com/neuro/journal/vaop/ncurrent/abs/nn.3594.html
"Using olfactory molecular specificity, we examined the inheritance of parental traumatic exposure, a phenomenon that has been frequently observed, but not understood."

What Is Epigenetics?
http://www.sciencemag.org/content/330/6004/611
"The cells in a multicellular organism have nominally identical DNA sequences (and therefore the same genetic instruction sets), yet maintain different terminal phenotypes. This nongenetic cellular memory, which records developmental and environmental cues (and alternative cell states in unicellular organisms), is the basis of epi-(above)-genetics."

Epigenetics
http://en.wikipedia.org/wiki/Epigenetics

Watch More:
How to Change Your Genes
https://www.youtube.com/watch?v=B5DU9lgbsSE
TestTube Wild Card
http://testtube.com/dnews/dnews-231-how-too-many-screens-affect-our-brain?utm_source=YT&utm_medium=DNews&utm_campaign=DNWC
Is Sexiness Hereditary?
https://www.youtube.com/watch?v=z6STRCncvM8
____________________

DNews is dedicated to satisfying your curiosity and to bringing you mind-bending stories & perspectives you won't find anywhere else! New videos twice daily. 

Watch More DNews on TestTube http://testtube.com/dnews

Subscribe now! http://www.youtube.com/subscription_center?add_user=dnewschannel

DNews on Twitter http://twitter.com/dnews

Anthony Carboni on Twitter http://twitter.com/acarboni

Laci Green on Twitter http://twitter.com/gogreen18

Trace Dominguez on Twitter http://twitter.com/trace501

DNews on Facebook http://facebook.com/dnews

DNews on Google+ http://gplus.to/dnews

Discovery News http://discoverynews.com]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44549/quartet-a-telomere-to-telomere-toolkit-for-gap-free-genome-assembly-and-centromeric-repeat-identification</guid>
	<pubDate>Sat, 08 Jun 2024 15:54:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44549/quartet-a-telomere-to-telomere-toolkit-for-gap-free-genome-assembly-and-centromeric-repeat-identification</link>
	<title><![CDATA[quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification.]]></title>
	<description><![CDATA[<p><span>quarTeT is a collection of tools for T2T genome assembly and basic analysis in automatic workflow.</span><br><br><span>Task include:</span></p>
<ul>
<li><a href="http://www.atcgn.com:8080/quarTeT/docuWeb.html#AssemblyMapper">AssemblyMapper</a>&nbsp;: reference-guided genome assembly</li>
<li><a href="http://www.atcgn.com:8080/quarTeT/docuWeb.html#GapFiller">GapFiller</a>&nbsp;: long-reads based gap filling</li>
<li><a href="http://www.atcgn.com:8080/quarTeT/docuWeb.html#TeloExplorer">TeloExplorer</a>&nbsp;: telomere identification</li>
<li><a href="http://www.atcgn.com:8080/quarTeT/docuWeb.html#CentroMiner">CentroMiner</a>&nbsp;: centromere candidate prediction</li>
</ul>
<p>https://academic.oup.com/hr/article/10/8/uhad127/7197191?login=false&nbsp;</p><p>Address of the bookmark: <a href="http://www.atcgn.com:8080/quarTeT/home.html" rel="nofollow">http://www.atcgn.com:8080/quarTeT/home.html</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/10773/bioinformatics-jrfsrf-position-at-national-research-centre-on-plant-biotechnology</guid>
  <pubDate>Sun, 11 May 2014 22:29:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY]]></title>
  <description><![CDATA[
<p>NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY<br />LBS, CENTRE, PUSA CAMPUS, IARI NEW DELHI<br />NEW DELHI – 110 012</p>

<p>WALK- IN –INTERVIEWS</p>

<p>Eligible candidates may appear in Walk-in-Interview on May 23, 2014 at 10 AM for the posts of Research Associates &amp; Senior Research Fellows (SRF) in the following DST/DBT/ICAR funded projects.</p>

<p>1 NPTC Project on Bioinformatics and Comparative Genomics</p>

<p>Research Associate (One)</p>

<p>Rs. 24000/- + 30% HRA for masters degree holder with more than 4 years experience</p>

<p>Essential: Ph D in Plant Molecular Biology &amp; Biotechnology/Genetics 0r Candidates who have already submitted their Ph D thesis in above subjects</p>

<p>Desirable: Research experience in Genomics, Molecular biology, Microarrays analysis, Gene cloning, transgenic Techniques , and computational analysis.</p>

<p>Senior Research Fellow ( UGCCSIR/ DBT/ ICAR Net qualified only): (One)</p>

<p>Rs. 16000/- + 30% HRA and Rs. 18000+30 HRA from 3rd year onwards</p>

<p>Essential:</p>

<p>1. ICAR/ UGCCSIR/DBT Net qualified only</p>

<p>2. M. Sc. (with thesis) in Biotechnology, Life Sciences, Biosciences/ Bioinformatics, Genetics/ Plant Pathology with experience in molecular biology.</p>

<p>Or M.Sc with more than 3 years research experiences</p>

<p>3. B.Sc. Agriculture or Biology</p>

<p>Desirable:<br />1. M. Sc. with thesis<br />2. Experience in molecular biology, plant tissue culture<br />3. Bioinformatics knowledge is important</p>

<p>2 DST JC Bose National Fellowship</p>

<p>Research Associate (Bioinformatics) : One</p>

<p>Rs.22000/- + 30% HRA for 1 &amp; 2nd Yr., Rs. 23000+ 30% HRA for 3rd year and Rs. 24000+30% HRA for 4th &amp;5th yr</p>

<p>Essential: M Ph D in Plant Molecular Biology &amp; Biotechnology/Genetics</p>

<p>Desirable: Research experience in Genomics, Molecular biology, Microarrays analysis, Gene cloning, transgenic Techniques , and computational analysis.</p>

<p>Age limit: Max.35 years (Age relaxation of 5 years for SC/ST &amp; women and 3 years for OBC)</p>

<p>The posts are purely temporary in nature and are co-terminus with the project. Initially the offer will be made for one year only and may be further extendable based on performance of the candidate. The interview will be held on May 23 , 2014 at 10:00 AM at NRCPB, LBS Building, Pusa Campus, IARI, New Delhi- 110012. The candidates must bring four copies of biodata (in the prescribed proforma), original certificates, attested photocopies of each of the certificates and an attested copy of recent passport size photograph. No. TA/DA would be given for the appearance in interview. Only the candidates having essential qualification would be entertained for the interviews. Short-listing of candidates based on academic merit and experience will be done in case of large number of applicants.</p>

<p>Advertisement: http://www.nrcpb.org/sites/default/files/Advertisement%20for%20RA%20and%20SRF%20Position.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/view/982</guid>
	<pubDate>Wed, 17 Jul 2013 15:25:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/982</link>
	<title><![CDATA[Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?]]></title>
	<description><![CDATA[<p><span>Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete<em> de novo</em> assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?</span></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/12943/a-history-of-bioinformatics-in-the-year-2039</guid>
	<pubDate>Wed, 23 Jul 2014 06:37:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/12943/a-history-of-bioinformatics-in-the-year-2039</link>
	<title><![CDATA[A History of Bioinformatics (in the Year 2039)]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/uwsjwMO-TEA" frameborder="0" allowfullscreen></iframe><p>C. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039</p>]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4158/sorghum-genome-sequenced</guid>
	<pubDate>Sun, 01 Sep 2013 19:46:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4158/sorghum-genome-sequenced</link>
	<title><![CDATA[Sorghum genome Sequenced!!]]></title>
	<description><![CDATA[<p>Sorghum, a staple food for 500 million resource-poor people in marginal environments and a model for other important crops, sorghum holds vital genetic resources as humanity confronts the nexus of food crisis and climate change. The recent research provides an unmatched resource to respond to these challenges by identifying a large high-quality SNP and indel data set in diverse sorghum genotypes.</p><p>In addition to providing a broad sample of the diversity in S. bicolor, the genotypes included in this study are known to display agronomically important traits including stay-green drought resistance, insect resistance, grain size and grain quality.</p><p>Find more at&nbsp;http://www.nature.com/ncomms/2013/130827/ncomms3320/full/ncomms3320.html</p><p>&nbsp;</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/11144/scientists-map-17294-proteins-produced-in-human-body</guid>
	<pubDate>Thu, 29 May 2014 01:57:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/11144/scientists-map-17294-proteins-produced-in-human-body</link>
	<title><![CDATA[Scientists map 17,294 proteins produced in human body]]></title>
	<description><![CDATA[<p>Indian scientists missed the genomic profiling bus, but they've more than made up for it by creating the first human proteome map which is an extension of the genomic study. Till now, here is no direct equivalent for the human proteome. But recently two groups present mass spectrometry-based analysis of human tissues, body fluids and cells mapping the large majority of the human proteome.</p><p>The Indian scientists working in Bangalore, along with their American counterparts, have mapped more than 17,000 proteins in 30 organs of the human body. Just like the human genome was sequenced around the turn of the millennium, this is an equivalent mapping of the human proteome.<br /><br />The researcher estimated there are around 20,500 proteins in the human body. These scientists have profiled around 17,294, which account for around 84% of the total proteins. Apart from this, the team also traced around 2,500 of 3,000 proteins that had been categorised as "missing proteins".</p><p>The work, done by group of Indian scientists, and Johns Hopkins University, published in the renowned journal Nature ( http://www.nature.com/nature/journal/v509/n7502/full/nature13302.html ). Of the 72 people who worked on the project, 46 are Indians.</p><p>Reference:</p><p>http://www.nature.com/nature/journal/v509/n7502/full/nature13302.html</p><p>http://www.proteinatlas.org/ -The antibody-based Human Protein Atlas programme</p><p>http://www.humanproteomemap.org/ -Proteogenomic analysis by identifying translated proteins from annotated pseudogenes, non-coding RNAs and untranslated regions.</p><p>https://www.proteomicsdb.org/ -Assembled protein evidence for 18,097 genes in ProteomicsDB</p><p>&nbsp;</p>]]></description>
	<dc:creator>Jit</dc:creator>
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