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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29487?offset=1430</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4356/metabolomics-and-proteomics</guid>
	<pubDate>Sat, 07 Sep 2013 17:39:49 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4356/metabolomics-and-proteomics</link>
	<title><![CDATA[Metabolomics and Proteomics]]></title>
	<description><![CDATA[<p>Metabolomics- A realm of small molecules</p>
<p>For detail lectures on Metabolomics:</p>
<p><a href="https://www.bits.vib.be/index.php/training/117-mass-spec-data-processing#download">https://www.bits.vib.be/index.php/training/117-mass-spec-data-processing#download</a></p>
<p><a href="http://compomics.com/bioinformatics-for-proteomics/">http://compomics.com/bioinformatics-for-proteomics/</a></p>
<p><a href="http://bioinformatics.ca/workshops/2013/informatics-and-statistics-metabolomics-2013">http://bioinformatics.ca/workshops/2013/informatics-and-statistics-metabolomics-2013</a></p>
<p><a href="http://fiehnlab.ucdavis.edu/staff/kind/Teaching">http://fiehnlab.ucdavis.edu/staff/kind/Teaching</a></p><p>Address of the bookmark: <a href="http://www.uab.edu/proteomics/pdf_files/2008/Class%2002-12-08.pdf" rel="nofollow">http://www.uab.edu/proteomics/pdf_files/2008/Class%2002-12-08.pdf</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19020/jrf-in-bioinformatics-bioinformatics-centre-north-eastern-hill-university</guid>
  <pubDate>Thu, 06 Nov 2014 10:24:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Bioinformatics Centre, North-Eastern Hill University]]></title>
  <description><![CDATA[
<p>Applications with complete bio-data are invited for JRF (3) and Project Assistant (1) in a DBT project "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India" sanctioned for a period of 3 years.</p>

<p>Details are available at www.nehu.ac.in and www.bicnehu.ac.in.</p>

<p>Applications must reach the undersigned within 15 days from the date of publication of this advertisement.</p>

<p>Prof. Pramod Tandon. PI/Mr. Devendra Kumar Biswal (Co-PI)</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43048/coverm-read-coverage-calculator-for-metagenomics</guid>
	<pubDate>Thu, 29 Apr 2021 23:39:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43048/coverm-read-coverage-calculator-for-metagenomics</link>
	<title><![CDATA[CoverM: Read coverage calculator for metagenomics]]></title>
	<description><![CDATA[<p>CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications.</p>
<p>CoverM calculates coverage of genomes/MAGs&nbsp;<code>coverm genome</code>&nbsp;(<a href="https://wwood.github.io/CoverM/coverm-genome.html">help</a>) or individual contigs&nbsp;<code>coverm contig</code>&nbsp;(<a href="https://wwood.github.io/CoverM/coverm-contig.html">help</a>). Calculating coverage by read mapping, its input can either be BAM files sorted by reference, or raw reads and reference genomes in various formats.</p><p>Address of the bookmark: <a href="https://github.com/wwood/CoverM" rel="nofollow">https://github.com/wwood/CoverM</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19162/icgeb-bioinformatics-rasrfjrf-vacancies</guid>
  <pubDate>Thu, 13 Nov 2014 13:39:30 -0600</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics RA/SRF/JRF Vacancies]]></title>
  <description><![CDATA[
<p>Research Associate/JRF/SRF position, DBT Sponsored Bioinformatics Infrastructure Facility</p>

<p>Applicants should hold a PhD or a first class MSc/MTech degree in Bioinformatics of Biotechnology/Life Sciences; experience in using bioinformatics tools, working in Linux and knowledge of computer network administration.</p>

<p>Submit CV and letter of interest by email to: Dr. Dinesh Gupta atdinesh@icgeb.res.in</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/6954/workshop-on-population-and-metagenomics-analysis-nerc</guid>
  <pubDate>Sun, 01 Dec 2013 14:25:45 -0600</pubDate>
  <link></link>
  <title><![CDATA[Workshop on population and metagenomics analysis @ NERC]]></title>
  <description><![CDATA[
<p>Workshop Overview</p>

<p>A ten-day workshop taking place between 25 February - 6 March 2014 providing detailed hands-on training for population and meta-genomics analysis for researchers with little or no background in mathematics or computing.</p>

<p>Venue: Dartington Hall, Totnes, Devon (nearest train station - Totnes)</p>

<p>Times: 25 February - 6th March 2014.</p>

<p>Arrival evening of Tuesday 25 February 2014. Departure morning of 6th March 2014. The course itself will take place 9am-12pm, 2pm-5pm and on some evenings 7pm-10pm everyday 26 February-5th March. Students are expected to attend the entire course.</p>

<p>Contact: research-events@exeter.ac.uk</p>

<p>Registration</p>

<p>The course itself is free of charged and is funded by a Professional Postgraduate Development Award from NERC.</p>

<p>A total of 30 funded places are available which cover the costs of accommodation and food, but not the cost of transportation to/from the venue.</p>

<p>An additional 10 places are available for participants from industry. The cost of accommodation and meals will need to be covered by the participants.</p>

<p>You should register your interest by 31 December 2013. Participants will be informed by 10th January 2014 as to whether they have been selected. Please note that preference will be given to researchers funded by NERC.</p>

<p>More at http://www.eventbrite.co.uk/e/nerc-workshop-on-population-and-metagenomics-analysis-tickets-8628888237</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19540/niab-molecular-biologybioinformatics-scientistra-openings</guid>
  <pubDate>Fri, 12 Dec 2014 21:08:47 -0600</pubDate>
  <link></link>
  <title><![CDATA[NIAB Molecular Biology/Bioinformatics Scientist/RA Openings]]></title>
  <description><![CDATA[
<p>D. No. 1-121/1, 4th and 5th Floors, Axis Clinicals Building, Miyapur, Hyderabad, Telangana, India- 500 049</p>

<p>Email: admin@niab.org.in Telephones: +91 40 2304 9403 Telefax: +91 40 2304 2740<br />Advertisement No: 5/2014</p>

<p>About NIAB National Institute of Animal Biotechnology (NIAB), Hyderabad, an autonomous institute under the aegis of Department of Biotechnology, Government of India, is aimed to harness novel and emerging biotechnologies and create knowledge in the cutting edge areas for improving animal health and productivity.</p>

<p>Applications are invited for the following temporary research positions to work in ongoing DBTBBSRC sponsored research project entitled “Transcriptome Analysis in Indian buffalo and the Genetics of Innate Immunity” at the National Institute of Animal Biotechnology, Hyderabad.</p>

<p>(A) Project Scientist – Level B (One Position)</p>

<p>Emoluments: Rs. 15600 + GP Rs. 5400 + 30 % HRA p.m. (Total emoluments will be Rs. 49,770/-p.m. for the duration of the project)</p>

<p>Essential Qualification: Candidates having M.V.Sc. in Veterinary Microbiology / Veterinary Pathology / Veterinary Public Health / Ph.D. degree in Life Sciences, Biotechnology, Molecular Biology or any other related field from the recognized university are eligible to apply.</p>

<p>The candidate should have a good academic record and research experience as evidenced from published in standard referred journals / patents.</p>

<p>Desirable: Candidates having research experience in the area of tissue culture, genomics, Transcriptomics and Advanced Molecular Biology will be given preference.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>(B) Research Associate in Bioinformatics (One position)</p>

<p>Fellowship: Rs. 22,000 + 30 % HRA</p>

<p>Essential Qualification: Candidates having Ph.D. degree or M.Tech. with three years of<br />experience in Bioinformatics, Computational Biology, Biotechnology, Life Sciences or any other related field are eligible to apply.</p>

<p>Desirable: Candidate having research experience in the area of next generation sequencing (NGS) data analysis, Genome wide association studies, Genomic selection, advance genomic data analysis etc., will be given preference. The candidate should have a good academic record and research experience as evidenced from published papers in standard journals / patents.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>Project Duration: The duration of the project is Three years and the positions are co- terminus with the duration of the project. (Initial appointment will be for one year and further extension will be granted based on annual review).</p>

<p>Mode of submission of application: Only online applications are to be submitted through<br />www.niab.org.in on or before 08 December, 2014. Link for online submission of applications will be available from 10 November 2014.</p>

<p>Advertisement: www.niab.org.in/Notifications/Advt_5_2014/Advt_5_2014.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/view/2044</guid>
	<pubDate>Mon, 12 Aug 2013 12:19:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/view/2044</link>
	<title><![CDATA[Does anyone have Nanopore latest updates?]]></title>
	<description><![CDATA[<p>There was a lot of buzz about&nbsp;<span>Oxford Nanopore Technologies&reg; is developing the GridION&trade; system and miniaturised MinION&trade; device. These are a new generation of electronic molecular analysis system for use in scientific research, personalised medicine, crop science, security/defence and more. The platform technology uses nanopores to analyse single molecules including DNA/RNA and proteins. With a broad patent portfolio, the Oxford Nanopore pipeline includes biological nanopores and solid-state nanopores.</span></p><p>Is this available, or still under trial mode?&nbsp;</p><p><a href="https://www.nanoporetech.com/">https://www.nanoporetech.com/</a></p><p><a href="https://www.nanoporetech.com/technology/the-minion-device-a-miniaturised-sensing-system/the-minion-device-a-miniaturised-sensing-system">https://www.nanoporetech.com/technology/the-minion-device-a-miniaturised-sensing-system/the-minion-device-a-miniaturised-sensing-system</a></p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19542/bic-pgi-bioinformatics-project-dissertation-program</guid>
  <pubDate>Fri, 12 Dec 2014 21:17:30 -0600</pubDate>
  <link></link>
  <title><![CDATA[BIC-PGI Bioinformatics Project Dissertation Program]]></title>
  <description><![CDATA[
<p>Biomedical Informatics Centre, PGIMER, Chandigarh invites application for a project dissertation program for students who have completed their first year of M.Sc. in Bioinformatics.</p>

<p>This is an exciting opportunity for Master's students to train in modern methods in Bioinformatics. The duration of the training will be four to six months, starting from January 2015.</p>

<p>Education: Pursuing M.Sc. Bioinformatics</p>

<p>Essential: Post graduate applicants should have completed their first year and should be in the third semester or first half of the second year.</p>

<p>Only students who are willing to spend a minimum period of 4 months to a maximum of six months, without any break, would be eligible for the program.</p>

<p>How to Apply: Candidates interested in the above project dissertation program should apply online.</p>

<p>Send your CV, Scanned copy of letter of recommendation from Head of Institution along with Registration form in the given format should be sent to: info@bicpgi.org</p>

<p>Please mention clearly “Project dissertation &amp; your Name” in the Subject.</p>

<p>The last date for application is December 31, 2014</p>

<p>Note: Selected candidates may please note that the program is free of cost and would not provide any financial aid for transport and stay.</p>

<p>Name of the selected candidates would be posted on the centre website by December 31, 2014. Incomplete applications will be rejected.</p>

<p>For more information visit our website: http://www.bic-pgi.org/project_dissertation.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/18741/a-powerful-yet-simple-gene-set-analysis-tool-for-interpreting-rna-seq-and-ngs-results</guid>
	<pubDate>Thu, 30 Oct 2014 09:19:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/18741/a-powerful-yet-simple-gene-set-analysis-tool-for-interpreting-rna-seq-and-ngs-results</link>
	<title><![CDATA[A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.]]></title>
	<description><![CDATA[<p>LifeMap Sciences is introducing&nbsp;<a href="http://geneanalytics.genecards.org/">GeneAnalytics</a>, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from variable sources. GeneAnalytics provides&nbsp;gene associations with tissues &amp; cells, diseases, pathways, GO terms and compounds.</p><p>Our main advantages over other similar tools are:</p><ul>
<li>GeneAnalytics is very simple and intuitive to use.</li>
<li>GeneAnalytics is based on our proprietary databases &ndash;&nbsp;<strong>GeneCards</strong>, MalaCards, PathCards and LifeMap Discovery, each of them integrates information from a very large number of resources.</li>
<li>GeneAnalytics supplies links for extensive background information on each of the matched results.</li>
</ul><p>&nbsp;</p><p>I invite you to try it out for free at&nbsp;geneanalytics.genecards.org, and would be happy to hear your comments and thoughts on how we can improve.</p><p>&nbsp;</p><p>Yours,</p><p>Shani Ben-Ari Fuchs</p><p>LifeMap Sciences Team</p>]]></description>
	<dc:creator>Shani</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35418/karyoploter-plot-whole-genomes-with-arbitrary-data</guid>
	<pubDate>Fri, 02 Feb 2018 03:24:28 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35418/karyoploter-plot-whole-genomes-with-arbitrary-data</link>
	<title><![CDATA[karyoploteR: plot whole genomes with arbitrary data]]></title>
	<description><![CDATA[<p><span><a href="http://bioconductor.org/packages/karyoploteR">karyoploteR</a></span><span>&nbsp;is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR is to offer the user an easy way to plot data along the genome to get broad genome-wide view to facilitate the identification of genome wide relations and distributions.</span></p><p>Address of the bookmark: <a href="https://bernatgel.github.io/karyoploter_tutorial/" rel="nofollow">https://bernatgel.github.io/karyoploter_tutorial/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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