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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29574?offset=900</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44908/top-journals-in-bioinformatics-how-to-choose-where-to-publish-why-it-matters</guid>
	<pubDate>Fri, 26 Sep 2025 06:49:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44908/top-journals-in-bioinformatics-how-to-choose-where-to-publish-why-it-matters</link>
	<title><![CDATA[Top Journals in Bioinformatics: How to Choose Where to Publish &amp; Why It Matters]]></title>
	<description><![CDATA[<div><p>Bioinformatics is a rapidly growing field at the intersection of biology, computer science, mathematics, and statistics. As data volumes increase, as well as the diversity of data types (genomics, proteomics, metabolomics, imaging, single‑cell data, etc.), the need for robust computational methods, rigorous models, and reproducible tools has never been greater.</p></div><p><br /> A key decision for researchers is: Where should I publish my work? The choice of journal impacts visibility, peer recognition, and long‑term influence of your research. Below I provide a guide to leading journals in bioinformatics, criteria for selecting the journal that best fits your work, and why these considerations matter.</p><p><strong>Leading Journals in Bioinformatics</strong></p><table border="0" cellspacing="0" cellpadding="0">
<tbody>
<tr>
<td valign="top">
<p>Journal</p>
</td>
<td valign="top">
<p>What it&rsquo;s Known For / Strengths</p>
</td>
<td valign="top">
<p>Best Fit for What Kind of Work</p>
</td>
</tr>
<tr>
<td valign="top">
<p>Bioinformatics (Oxford Journals)</p>
</td>
<td valign="top">
<p>Strong for methods, computational biology, database papers, algorithm development.</p>
</td>
<td valign="top">
<p>New computational methods; tools with broad applicability; databases; methodological advances.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>Briefings in Bioinformatics</p>
</td>
<td valign="top">
<p>High impact reviews, overviews, and synthesis articles.</p>
</td>
<td valign="top">
<p>Review‑style articles; comparative studies; widely used tools.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>PLOS Computational Biology</p>
</td>
<td valign="top">
<p>Emphasis on method development plus biological insight; open access.</p>
</td>
<td valign="top">
<p>Interdisciplinary work; computational method with biological applications.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>BMC Bioinformatics</p>
</td>
<td valign="top">
<p>Broad scope; good for software, pipelines, resources; open access.</p>
</td>
<td valign="top">
<p>Software development; pipelines; data resources; benchmarking.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>IEEE Transactions on Computational Biology and Bioinformatics (TCBB)</p>
</td>
<td valign="top">
<p>Rigor in computation, algorithms, performance.</p>
</td>
<td valign="top">
<p>Algorithmic innovations; statistical/computational method work.</p>
</td>
</tr>
<tr>
<td valign="top">
<p>BioData Mining</p>
</td>
<td valign="top">
<p>Focused on data mining / ML in biology.</p>
</td>
<td valign="top">
<p>Machine learning / AI applied to biological datasets; predictive models.</p>
</td>
</tr>
</tbody>
</table><p><strong>Criteria to Use When Choosing a Journal</strong></p><ul>
<li>Scope &amp; Audience</li>
<li>Impact &amp; Visibility</li>
<li>Review Time &amp; Speed</li>
<li>Open Access</li>
<li>Cost / APCs</li>
<li>Reputation vs Practical Fit</li>
<li>Reproducibility, Data &amp; Code Sharing Policies</li>
<li>Indexing &amp; Reach</li>
<li>Quality of the field</li>
<li>Accelerating discovery</li>
<li>Fair access</li>
<li>Credibility &amp; trust</li>
<li>Read recent papers in the journal</li>
<li>Tailor the manuscript</li>
<li>Check the author guidelines</li>
<li>Have backup journals ready</li>
<li>More emphasis on machine learning / AI</li>
<li>Single‑cell, spatial omics, multimodal data</li>
<li>Cloud workflows, reproducible pipelines</li>
<li>Preprints / open peer review</li>
<li>Alternative metrics (software use, downloads, community adoption)</li>
</ul><p>Selecting where to publish in bioinformatics isn&rsquo;t just about prestige; it&rsquo;s about reaching the right audience, ensuring your work is usable, and contributing to the field responsibly.</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/6300/list-of-bioinformatics-vacancy-jobs-opportunity-websites</guid>
	<pubDate>Tue, 12 Nov 2013 20:04:28 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/6300/list-of-bioinformatics-vacancy-jobs-opportunity-websites</link>
	<title><![CDATA[List of Bioinformatics Vacancy, Jobs, Opportunity websites]]></title>
	<description><![CDATA[<p>Bioinformatics cover wide area of biology, and indulge in almost all sort of science related work. Bioinformatician give strong emphasis on open access to biological information as well as Free and Open Source software!!</p>
<p>There are several jobs opening in bioinformatics all around the world, but many of them do not get proper attention due to lack of advertisements, or social connectivity. This bookmark is created for an academic, non-academic, scientists and budding researchers to help and updates the bioinformatics/computational biology jobs links of all know websites around the world.</p>
<p><strong>I also love to stream the live <strong>bioinformatics or Computational biology jobs</strong> updates using Twitter https://twitter.com/search?q=bioinformatics%20jobs&amp;src=typd</strong></p>
<p>Find out here about exciting job opportunities in the life sciences.</p>
<blockquote>
<p>Please add well known bioinformatics jobs websites below in comment section.</p>
</blockquote><p>Address of the bookmark: <a href="http://www.nature.com/naturejobs/science/jobs?utf8=%E2%9C%93&amp;q=bioinformatics&amp;where=&amp;commit=Find+Jobs" rel="nofollow">http://www.nature.com/naturejobs/science/jobs?utf8=%E2%9C%93&amp;q=bioinformatics&amp;where=&amp;commit=Find+Jobs</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/45115/postdoctoral-fellow-in-genomics-and-comparative-genomics</guid>
  <pubDate>Thu, 09 Apr 2026 02:12:32 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Fellow in Genomics and Comparative Genomics]]></title>
  <description><![CDATA[
<p>Environnement de travail (Work environment):<br />The successful candidate will join a dynamic research group working<br />on the ecology and evolution of host'parasite'environment<br />interactions in non-model organisms, particularly snail vectors and<br />its trematode parasites. She/He will conduct genomic analyses aimed at<br />understanding host'parasite coevolution and the genetic architecture<br />of resistance in the invasive snail Pseudosuccinea columella to the<br />zoonotic parasite Fasciola hepatica. This thematic line is embedded<br />within the regional scientific project InvaSnail financed by the<br />ExposUM initiative from the Montpellier. The position is based in<br />Montpellier, a vibrant scientific hub in Southern France internationally<br />recognized for excellence in ecology and evolutionary biology. The IHPE<br />laboratory provides a collaborative research environment with access<br />to high-performance computing facilities, sequencing platforms, and<br />strong interdisciplinary interactions across research institutions in<br />the Montpellier area. University</p>

<p>Main mission:</p>

<p>Develop and implement strategies for whole-genome sequencing of non-model<br />species<br />Generate high-quality de novo genome assemblies using short- and long-read<br />sequencing technologies<br />Perform genome annotation and structural/functional characterization<br />Conduct comparative genomic analyses across related species or populations<br />Design and implement genome-wide association studies (GWAS) to identify<br />loci associated with phenotypic or adaptive traits<br />Integrate genomic, phenotypic, and environmental datasets<br />Contribute to the development of reproducible bioinformatics pipelines</p>

<p>ActivitÃ©s (Activities):</p>

<p>Lead the genomic component of the research project<br />High-molecular-weight DNA extraction optimization<br />Long-read genome assembly (PacBio HiFi / ONT)<br />Genome polishing and quality assessment (BUSCO, QUAST)<br />Structural and functional annotation<br />Variant discovery (SNPs, indels, SVs)<br />Population genomic analyses (FST, demographic inference)<br />Mixed-model GWAS accounting for structure<br />Workflow development (Snakemake/Nextflow)<br />HPC-based pipeline implementation<br />Publish results in peer-reviewed journals<br />Present findings at international conferences<br />Collaborate with experimental and computational team members<br />Contribute to project development<br />Mentor graduate students when appropriate</p>

<p>More at https://evol.mcmaster.ca/brian/evoldir/PostDocs//MontpellierU.ComparativeGenomics</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/6561/mathomics-lab</guid>
  <pubDate>Tue, 19 Nov 2013 18:17:32 -0600</pubDate>
  <link></link>
  <title><![CDATA[MATHomics Lab]]></title>
  <description><![CDATA[
<p>Mathomics is a collaborative research group of the Center for Mathematical Modeling and the Center for Genome Regulation at University of Chile, created to play a central role in the development of biotechnological projects, providing state of the art bioinformatics and mathematical modeling tools,  allowing to face these problems from the point of view of Systems Biology. </p>

<p>Lab page @ http://www.mathomics.cl/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/45226/professor-of-bioinformatics</guid>
  <pubDate>Sat, 15 Aug 2026 12:39:03 -0500</pubDate>
  <link></link>
  <title><![CDATA[Professor of Bioinformatics]]></title>
  <description><![CDATA[
<p>The Department of Statistics are seeking to recruit a Professor of Bioinformatics. The professorship will be held alongside a Fellowship at University College.</p>

<p>The Department is at the forefront of developments in machine learning, data science, and computational methods for understanding complex biological systems, integrating these approaches into both its research and teaching. This role offers significant scope to shape the future of bioinformatics and quantitative biology at Oxford and beyond.</p>

<p>You will be expected to develop and lead a world-class research programme in bioinformatics, helping to strengthen Oxford's position in areas such as statistical genomics, computational biology, machine learning for biological data, engineering biology, systems biology, and biomedical data science. We value the breadth of approaches that contribute to modern bioinformatics. Whatever your particular focus, you will understand how quantitative and computational methods can be applied to important biological and biomedical questions, and how collaboration across disciplines can generate new insights and opportunities. Alongside your own research, you will support the development of doctoral students, postdoctoral researchers, and early-career academics. You will contribute to our teaching at undergraduate and postgraduate level, delivering lectures, supervising student projects, and supporting graduate research students.</p>

<p>We are looking for someone who combines scholarly distinction with a collaborative and ambitious approach to research. You will be a researcher with an international reputation in bioinformatics, with a strong record of producing influential research at the interface of statistics, computational biology, genomics, and data science, and of securing research funding. Your work should advance the field, whether through methodological innovation, biological discovery, or the development of new approaches to understanding complex biological and biomedical data. You will bring experience of shaping research strategy, building productive collaborations, and exercising academic leadership. Above all, we wish to appoint someone who shares our values of intellectual curiosity, academic excellence, scholarly integrity, and a commitment to fostering a positive, supportive, and inclusive environment for all.</p>

<p>If you would like to discuss this post, please contact the Head of the Department of Statistics, Professor Frank Windmeijer, frank.windmeijer@stats.ox.ac.uk, or for information about University College please contact the Senior Tutor, Dr Andrew Bell, andrew.bell@univ.ox.ac.uk. All enquiries will be treated in strict confidence and will not form part of the selection decision.</p>

<p>The closing date for applications is 12:00 noon UK time on Monday 21 September 2026. Interviews are expected to be held in November 2026.</p>

<p>Apply here https://my.corehr.com/pls/uoxrecruit/erq_jobspec_version_4.display_form</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/6817/research-assistant-university-of-hyderabad</guid>
  <pubDate>Mon, 25 Nov 2013 10:21:26 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Assistant @ University of Hyderabad]]></title>
  <description><![CDATA[
<p>University of Hyderabad<br />Repository for Tomato Genomic Resources<br />Department of Plant Sciences<br />Bioinformatics Position in Tomato Functional Genomics </p>

<p>At the Repository for Tomato Genomics Resources, we are working on Tomato Functional Genomics, using TILLING, Insertional Mutagenesis, proteomics, metabolomics approaches to study fruit ripening in tomato. The current aims of the group include using reverse and forward genetics strategies to isolate tomato mutants delayed in ripening, having high lycopene and folate content in tomato fruits and analysis of light and hormonal signal transduction pathways. For recent publications of the group see (Plant Physiol 161: 2085–2101, Plant Physiol 156: 1424-1438; Molecular Plant 3: 854-869; Plant Methods 6: 3; Plant Methods 5:18; Plant Signaling and Behavior 5:11.).</p>

<p>Currently we have one position available in the projects awarded to Prof. R.P. Sharma funded by Dept of Biotechnology. The qualification for this Position is as follows:</p>

<p>Research Assistant: Applicants should have experience in networking using R language and should be able to develop networks using the transcriptome, proteome and metabolite data sets. M.Tech. in Bioinformatics is required. The selected candidate would be paid Rs. 13,000/-pm- consolidated.</p>

<p>Candidates interested in above positions should send a one page statement clearly explaining how their skills are relevant to the position. The candidates should also enclose detailed CV and the name/email id for three referees. The candidates can send their application by email at rameshwar.sharma@uohyd.ac.in and y.sreelakshmi@uohyd.ac.in on or before December 10th, 2013. The position is purely temporary in nature. Shortlisted candidates would be called for interview. No TA/DA would be provided for attending the interview. We also have openings for CSIR-NET JRF candidates for pursuing PhD in above research areas.</p>

<p>Interested candidates with CSIR-NET JRF can send their CV to the above email<br />addresses.</p>

<p>Advertisement:</p>

<p>http://www.uohyd.ac.in/images/recruitment/tomanet_positions_221113.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/2560/great-place-to-study-bioinformatics-in-europe</guid>
	<pubDate>Sun, 18 Aug 2013 18:41:34 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/2560/great-place-to-study-bioinformatics-in-europe</link>
	<title><![CDATA[Great Place to Study Bioinformatics in Europe]]></title>
	<description><![CDATA[<p>Study bioinformatics is like being jack of all trade so it is important you choose where it will be good backup of computer science, and natural science infrastructure and faculty. Especially having a good teachers in computer science is indispensible.&nbsp;</p><p><strong>Few places in Europe where good (and @some places no tution fees) master bioinformatics courses and recommended are</strong>:</p><p><strong>KU Leuven, Belgium</strong></p><p><a href="http://onderwijsaanbod.kuleuven.be/opleidingen/e/CQ_50269018.htm">http://onderwijsaanbod.kuleuven.be/opleidingen/e/CQ_50269018.htm</a></p><p><strong>ETH, Zurich</strong></p><p><a href="http://www.cbb.ethz.ch/">http://www.cbb.ethz.ch/</a></p><p><strong>University of Copenhagen, Denmark</strong></p><p><a href="http://studies.ku.dk/masters/bioinformatics/">http://studies.ku.dk/masters/bioinformatics/</a></p><p><strong>University of Helsinki, Finland</strong></p><p><a href="http://www.cs.helsinki.fi/en/mbi/">http://www.cs.helsinki.fi/en/mbi/</a></p><p><strong>Stockholm University, Sweden</strong></p><p><a href="http://www.sbc.su.se/masters/">http://www.sbc.su.se/masters/</a></p><p><strong>Universities in Netherlands</strong></p><p><a href="http://www.nbic.nl/education/msc-programmes/">http://www.nbic.nl/education/msc-programmes/</a></p><p><strong>TUM , Munich Germany</strong></p><p><a href="http://www.mastersportal.eu/studies/865/bioinformatics.html">http://www.mastersportal.eu/studies/865/bioinformatics.html</a></p><p><strong>University of Bergen, Norway</strong></p><p><a href="http://www.uib.no/en/studieprogram/MAMN-INF/BI/plan">http://www.uib.no/en/studieprogram/MAMN-INF/BI/plan</a></p><p><strong>Goethe-University in Frankfurt am Main</strong></p><p><a href="http://www.uni-frankfurt.de/58444439/mabi">http://www.uni-frankfurt.de/58444439/mabi</a></p><p><strong>Other links</strong>:</p><p><a href="http://www.masterstudies.com/Masters-Degree/Bioinformatics/Europe/">http://www.masterstudies.com/Masters-Degree/Bioinformatics/Europe/</a></p><p><a href="https://studyinsweden.se/programmes/?query=bioinformatics&amp;period=ht-2016&amp;level=ma&amp;subject=natural-science&amp;university=#search">https://studyinsweden.se/programmes/?query=bioinformatics&amp;period=ht-2016&amp;level=ma&amp;subject=natural-science&amp;university=#search</a></p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/7816/boku-lab</guid>
  <pubDate>Wed, 08 Jan 2014 19:33:12 -0600</pubDate>
  <link></link>
  <title><![CDATA[BOKU Lab]]></title>
  <description><![CDATA[
<p>We are interested in the study of complex systems in living organisms. Novel views augmenting the classical gene by gene approaches are required to overcome the engineered redundancies and combinatorial effects prevalent in higher eukaryotes. We therefore combine work to establish improved quantitative experimental assays, such as microarrays or differential in-gel electrophoresis, and development of modern computational methods, such as hierarchical probabilistic models or integration of heterogeneous data sources, focussed by biological studies in our laboratory and collaborations.</p>

<p>Highlights of our research include:</p>

<p>    Optimization of microarray design, probe signal interpretation <br />    Advanced models and tools for expression profiling<br />    State-of-the-art applications and integrated analyses </p>

<p>Lab page @ http://bioinf.boku.ac.at/</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4197/bioinformatics-course-and-lectures</guid>
	<pubDate>Tue, 03 Sep 2013 16:41:02 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4197/bioinformatics-course-and-lectures</link>
	<title><![CDATA[Bioinformatics course and lectures]]></title>
	<description><![CDATA[<p><a href="http://openwetware.org/wiki/User:Jarle_Pahr/Bioinformatics">http://openwetware.org/wiki/User:Jarle_Pahr/Bioinformatics</a></p><p>Address of the bookmark: <a href="http://gtpb.igc.gulbenkian.pt/bicourses/index.html" rel="nofollow">http://gtpb.igc.gulbenkian.pt/bicourses/index.html</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/7213/postdoctoral-position-bioinformaticscomputational-biology</guid>
  <pubDate>Thu, 12 Dec 2013 17:58:00 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Position (Bioinformatics/Computational Biology)]]></title>
  <description><![CDATA[
<p>University College Cork<br />LAPTI<br />Cork-Co Cork-Ireland</p>

<p>Postdoctoral position is available for three years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology allows obtaining high resolution digital snapshots of gene expression in cells. The position is available starting on the 1st of October, 2013.</p>

<p>Candidate is expected to have Ph.D. in Bioinformatics or Computational Biology. Candidates with the degree in non-Biological disciplines such as Computer Science, Statistics, Applied Mathematics, Physics or Electrical Engineering will also be considered.</p>

<p>The position is available at LAPTI (http://lapti.ucc.ie) that is located in the Western Gate Building (http://www.stwarchitects.com/project-information.php?c=1&amp;p=09993) at University College Cork. Western Gate Building Research Complex hosts several UCC departments and provides ideal environment for interdisciplinary research. Cork (sometimes referenced as “Venice of Ireland”) is the second most populous city in the Republic. It has friendly cosmopolitan atmosphere and vibrant culture. A number of American industrial giants such as Apple , EMC and Pfizer have chosen Cork as a home for their European headquarters.</p>

<p>The details of the application process are given at http://lapti.ucc.ie/jobs.html. To ensure prompt processing of your application use the subject line: ‘Postdoc computational’. All applications received prior to August the 1st are guaranteed equal consideration. However, applications at the later dates will also be considered until the position is filled.</p>

<p>For more info visit http://lapti.ucc.ie</p>
]]></description>
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