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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29601?offset=1150</link>
	<atom:link href="https://bioinformaticsonline.com/related/29601?offset=1150" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18579/cluster-innovation-center-university-of-delhi</guid>
  <pubDate>Wed, 22 Oct 2014 10:39:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[CLUSTER INNOVATION CENTER @ UNIVERSITY OF DELHI]]></title>
  <description><![CDATA[
<p>Applications for Pre-selection of  candidates under ‘Institutions Mode’ for DST-ISPIRE Faculty in  Computational Biology/ Systems Biology/ Bioinformatics</p>

<p>Applications are invited for pre-selection  of candidates for Ministry of Science and Technology, Department of Science and Technology INSPIRE Faculty Scheme: a component of “Assured Opportunity for Research Career (AORC)” under INSPIRE in the area of computational Biology/Systems Biology/Bioinformatics.</p>

<p>Candidates having done their B.Tech/B.E.  and or M.Sc./M.Tech in Computer Science or Biotechnology and Ph.D. in Systems/ Computational Biology or Bioinformatics may apply in the following format prescribed by DST to the Director, Cluster Innovation Center, University Stadium, GC Narang Marg, University of Delhi, Delhi -11107. Detials of other qualification, age limits etc., please visit www.inspire-dst.gov.in.</p>

<p>Application on the prescribed format may be submitted by email to director@cic.du.ac.in before October 25, 2014. Selected candidates shall be called for an interview. The date, time and venue of the interview shall be informed by email/telephone. For more information about Cluster Innovation Center, please visit https://ducic.ac.in.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/36585/custom-r-charts-coming-to-excel</guid>
	<pubDate>Sat, 12 May 2018 07:30:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/36585/custom-r-charts-coming-to-excel</link>
	<title><![CDATA[Custom R charts coming to Excel !]]></title>
	<description><![CDATA[<p>This week at the BUILD conference, Microsoft&nbsp;<a href="https://dev.office.com/blogs/azure-machine-learning-javascript-custom-functions-and-power-bi-custom-visuals-further-expand-developers-capabilities-with-excel" target="_blank">announced</a>&nbsp;that Power BI custom visuals will soon be available as charts with Excel. You'll be able to choose a range of data within an Excel workbook, and pass those data to one of the built-in Power BI custom visuals, or one you've&nbsp;<a href="https://github.com/Microsoft/PowerBI-Visuals/" target="_blank">created yourself using the API</a>.</p><p><a href="http://a0.typepad.com/6a0105360ba1c6970c0224e038fa08200d-pi" target="_blank"><img src="https://www.r-bloggers.com/wp-content/plugins/lazy-load/images/1x1.trans.gif" alt="Excel custom visuals" title="Excel custom visuals" style="border: 0px; border: 0px;"></a></p><p>Since you can&nbsp;<a href="https://docs.microsoft.com/en-us/power-bi/desktop-r-visuals?WT.mc_id=Revolutions-blog-davidsmi" target="_blank">create Power BI custom visuals using R</a>, that means you'll be able to design a custom R-based chart, and make it available to people using Excel &mdash; even if they don't know how to use R themselves. There also many&nbsp;<a href="https://appsource.microsoft.com/en-us/marketplace/apps?product=power-bi-visuals&amp;page=1&amp;src=office" target="_blank">pre-defined custom visuals available</a>, including some familiar R charts like&nbsp;<a href="https://appsource.microsoft.com/en-us/product/power-bi-visuals/WA104380817?tab=Overview" target="_blank">decision trees</a>,&nbsp;<a href="https://appsource.microsoft.com/en-us/product/power-bi-visuals/WA104380905?tab=Overview" target="_blank">calendar heatmaps</a>, and&nbsp;<a href="https://appsource.microsoft.com/en-us/product/power-bi-visuals/WA104381492?tab=Overview" target="_blank">hexbin scatterplots</a>.</p><p>For more details on how you'll be able to use custom R visuals in Excel, check out the blog post linked below.</p><p>PowerBI Blog:&nbsp;<a href="https://powerbi.microsoft.com/en-us/blog/excel-announces-new-data-visualization-capabilities-with-power-bi-custom-visuals/" target="_blank">Excel announces new data visualization capabilities with Power BI custom visuals</a></p>]]></description>
	<dc:creator>Surabhi Chaudhary</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19059/ipython-interactive-notebooks</guid>
	<pubDate>Fri, 07 Nov 2014 12:07:02 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19059/ipython-interactive-notebooks</link>
	<title><![CDATA[IPython: Interactive notebooks]]></title>
	<description><![CDATA[<p>The IPython Notebook is a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document.</p><p>These notebooks are normal files that can be shared with colleagues, converted to other formats such as HTML or PDF, etc. You can share any publicly available notebook by using the IPython Notebook Viewer service which will render it as a static web page. This makes it easy to give your colleagues a document they can read immediately without having to install anything.</p><p><img src="http://ipython.org/_images/9_home_fperez_prof_grants_1207-sloan-ipython_proposal_fig_ipython-notebook-specgram.png" width="985" height="916" alt="image" style="border: 0px;"><br /><br />To learn more about using the IPython Notebook, you can visit our example collection, and you can read the documentation for all the details on how to use and configure the system. The Notebook Gallery showcases many interesting notebooks covering a variety of topics, from basic programming to advanced scientific computing.</p><p>&nbsp;</p><p>More http://www.nature.com/news/interactive-notebooks-sharing-the-code-1.16261</p><p>http://ipython.org/ipython-doc/1/interactive/notebook.html</p><p>Reference http://ipython.org/notebook.html</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38067/metaplotr-a-perlr-pipeline-for-plotting-metagenes-of-nucleotide-modifications-and-other-transcriptomic-sites</guid>
	<pubDate>Mon, 05 Nov 2018 08:12:45 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38067/metaplotr-a-perlr-pipeline-for-plotting-metagenes-of-nucleotide-modifications-and-other-transcriptomic-sites</link>
	<title><![CDATA[MetaPlotR: a Perl/R pipeline for plotting metagenes of nucleotide modifications and other transcriptomic sites]]></title>
	<description><![CDATA[<p><span>An increasing number of studies are mapping protein binding and nucleotide modifications sites throughout the transcriptome. Often, these sites cluster in certain regions of the transcript, giving clues to their function. Hence, it is informative to summarize where in the transcript these sites occur. A metagene is a simple and effective tool for visualizing the distribution of sites along a simplified transcript model. In this work, we introduce MetaPlotR, a Perl/R pipeline for creating metagene plots.</span></p><p>Address of the bookmark: <a href="https://github.com/olarerin/metaPlotR" rel="nofollow">https://github.com/olarerin/metaPlotR</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38443/genoplotr-plot-gene-and-genome-maps-project</guid>
	<pubDate>Wed, 12 Dec 2018 08:33:41 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38443/genoplotr-plot-gene-and-genome-maps-project</link>
	<title><![CDATA[genoPlotR - plot gene and genome maps project!]]></title>
	<description><![CDATA[<p>genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.</p>
<h3>Features</h3>
<ul>
<li>Linear representation of several segments of DNA</li>
<li>Comparisons represented by areas between the segments (like Artemis, for example)</li>
<li>Reads from common formats: Genbank, EMBL, blast, Mauve, and from user-generated tab files</li>
<li>Plot several subsegments of the same segment on the same line, separated by a //</li>
<li>Automatic or manual placement of the segments on the plot</li>
<li>Add annotations to all the lines</li>
<li>Create smart, automatic annotations for genomes, based on gene names</li>
<li>Add a user-generated tree</li>
<li>Add a global scale or a scale to each line</li>
<li>Use user-defined graphical functions to represent genes</li>
<li></li>
</ul><p>Address of the bookmark: <a href="http://genoplotr.r-forge.r-project.org/" rel="nofollow">http://genoplotr.r-forge.r-project.org/</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19161/niab-molecular-biologybioinformatics-scientistra-openings</guid>
  <pubDate>Thu, 13 Nov 2014 13:37:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[NIAB Molecular Biology/Bioinformatics Scientist/RA Openings]]></title>
  <description><![CDATA[
<p>D. No. 1-121/1, 4th and 5th Floors, Axis Clinicals Building, Miyapur, Hyderabad, Telangana, India- 500 049</p>

<p>Email: admin@niab.org.in Telephones: +91 40 2304 9403 Telefax: +91 40 2304 2740<br />Advertisement No: 5/2014</p>

<p>About NIAB National Institute of Animal Biotechnology (NIAB), Hyderabad, an autonomous institute under the aegis of Department of Biotechnology, Government of India, is aimed to harness novel and emerging biotechnologies and create knowledge in the cutting edge areas for improving animal health and productivity.</p>

<p>Applications are invited for the following temporary research positions to work in ongoing DBTBBSRC sponsored research project entitled “Transcriptome Analysis in Indian buffalo and the Genetics of Innate Immunity” at the National Institute of Animal Biotechnology, Hyderabad.</p>

<p>(A) Project Scientist – Level B (One Position)</p>

<p>Emoluments: Rs. 15600 + GP Rs. 5400 + 30 % HRA p.m. (Total emoluments will be Rs. 49,770/-p.m. for the duration of the project)</p>

<p>Essential Qualification: Candidates having M.V.Sc. in Veterinary Microbiology / Veterinary Pathology / Veterinary Public Health / Ph.D. degree in Life Sciences, Biotechnology, Molecular Biology or any other related field from the recognized university are eligible to apply.</p>

<p>The candidate should have a good academic record and research experience as evidenced from published in standard referred journals / patents.</p>

<p>Desirable: Candidates having research experience in the area of tissue culture, genomics, Transcriptomics and Advanced Molecular Biology will be given preference.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>(B) Research Associate in Bioinformatics (One position)</p>

<p>Fellowship: Rs. 22,000 + 30 % HRA</p>

<p>Essential Qualification: Candidates having Ph.D. degree or M.Tech. with three years of<br />experience in Bioinformatics, Computational Biology, Biotechnology, Life Sciences or any other related field are eligible to apply.</p>

<p>Desirable: Candidate having research experience in the area of next generation sequencing (NGS) data analysis, Genome wide association studies, Genomic selection, advance genomic data analysis etc., will be given preference. The candidate should have a good academic record and research experience as evidenced from published papers in standard journals / patents.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>Project Duration: The duration of the project is Three years and the positions are co- terminus with the duration of the project. (Initial appointment will be for one year and further extension will be granted based on annual review).</p>

<p>Mode of submission of application: Only online applications are to be submitted through<br />www.niab.org.in on or before 08 December, 2014. Link for online submission of applications will be available from 10 November 2014.</p>

<p>Advertisement: www.niab.org.in/Notifications/Advt_5_2014/Advt_5_2014.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39244/chromomap-an-r-package-for-interactive-visualization-and-annotation-of-chromosomes</guid>
	<pubDate>Fri, 12 Apr 2019 05:30:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39244/chromomap-an-r-package-for-interactive-visualization-and-annotation-of-chromosomes</link>
	<title><![CDATA[chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes]]></title>
	<description><![CDATA[<p>Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the data associated with chromosome elements (like gene expression) in the form of heat colors which can be highly advantageous in the scientific interpretations and research work. The package provide multiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling. The plots can be saved as HTML documents that can be customized and shared easily. In addition, you can include them in R Markdown or in R 'Shiny' applications.</p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html" rel="nofollow">https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19249/bioinformatics-jrfrasrf-position-at-panjab-university</guid>
  <pubDate>Wed, 19 Nov 2014 20:19:49 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at PANJAB UNIVERSITY]]></title>
  <description><![CDATA[
<p>CENTRE FOR SYSTEMS BIOLOGY &amp; BIOINFORMATICS<br />UIEAST, PANJAB UNIVERSITY, CHANDIGARH</p>

<p>Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for Systems Biology &amp; Bioinformatics, UIEAST, Panjab University, Chandigarh which is tenable till the period of<br />the project.</p>

<p>Essential Qualification</p>

<p>For Research Fellow:-</p>

<p>M.Sc. in Systems Biology and Bioinformatics / Life Sciences with minimum 55% marks.</p>

<p>Preference will be given to NET/GATE/ICMR qualified candidates without fellowship however, candidates who have cleared the Panjab University Ph.D. entrance test in Systems Biology &amp; Bioinformatics will also be eligible.</p>

<p>For Program Assistant:-</p>

<p>The candidate must have M.Sc./M.Tech/MCA/PGDCA in Computer Science and must be able to handle LAN, Linex. Preference will be given to the candidate having experience in<br />System Administration.</p>

<p>Emoluments</p>

<p>For Research Fellow Rs. 12,500/- per month (Fixed)<br />For Program Assistant Rs. 12,500/- per month (Fixed)</p>

<p>Applications should be reach on or before 19-11-2014 in the office of the undersigned.</p>

<p>Interview will be held on 21-11-2014 in the office of the Coordinator, Centre for Systems Biology &amp; Bioinformatics, South Campus, Block-3, Sector-25, Panjab University, Chandigarh. No TA/DA will be paid.</p>

<p>Advertisement:</p>

<p>http://jobs.puchd.ac.in/includes/jobs/2014/20141110143634-Advertisement.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39956/alluvial-diagram</guid>
	<pubDate>Sat, 21 Sep 2019 07:31:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39956/alluvial-diagram</link>
	<title><![CDATA[alluvial diagram]]></title>
	<description><![CDATA[<p><span style="color: #000000; font-size: 14px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff; float: none;">Alluvial diagram is a variant of a Parallel Coordinates Plot (PCP) but for categorical variables. Variables are assigned to vertical axes that are parallel. Values are represented with blocks on each axis. Observations are represented with<span>&nbsp;</span></span><em style="color: #000000; font-size: 14px; font-weight: 400; text-align: start; background-color: #ffffff;">alluvia</em><span style="color: #000000; font-size: 14px; font-style: normal; font-weight: 400; text-align: start; background-color: #ffffff; float: none;"><span>&nbsp;</span>(sing. &ldquo;alluvium&rdquo;) spanning across all the axes.</span></p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/alluvial/vignettes/alluvial.html" rel="nofollow">https://cran.r-project.org/web/packages/alluvial/vignettes/alluvial.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40721/efs-an-ensemble-feature-selection-tool-implemented-as-r-package-and-web-application</guid>
	<pubDate>Tue, 28 Jan 2020 05:12:23 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40721/efs-an-ensemble-feature-selection-tool-implemented-as-r-package-and-web-application</link>
	<title><![CDATA[EFS: an ensemble feature selection tool implemented as R-package and web-application]]></title>
	<description><![CDATA[<p><span>The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance. Currently, eight different feature selection methods have been integrated in EFS, which can be used separately or combined in an ensemble.</span></p>
<p><a href="https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0142-8">https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0142-8</a></p><p>Address of the bookmark: <a href="http://efs.heiderlab.de/" rel="nofollow">http://efs.heiderlab.de/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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