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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29601?offset=1160</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19161/niab-molecular-biologybioinformatics-scientistra-openings</guid>
  <pubDate>Thu, 13 Nov 2014 13:37:27 -0600</pubDate>
  <link></link>
  <title><![CDATA[NIAB Molecular Biology/Bioinformatics Scientist/RA Openings]]></title>
  <description><![CDATA[
<p>D. No. 1-121/1, 4th and 5th Floors, Axis Clinicals Building, Miyapur, Hyderabad, Telangana, India- 500 049</p>

<p>Email: admin@niab.org.in Telephones: +91 40 2304 9403 Telefax: +91 40 2304 2740<br />Advertisement No: 5/2014</p>

<p>About NIAB National Institute of Animal Biotechnology (NIAB), Hyderabad, an autonomous institute under the aegis of Department of Biotechnology, Government of India, is aimed to harness novel and emerging biotechnologies and create knowledge in the cutting edge areas for improving animal health and productivity.</p>

<p>Applications are invited for the following temporary research positions to work in ongoing DBTBBSRC sponsored research project entitled “Transcriptome Analysis in Indian buffalo and the Genetics of Innate Immunity” at the National Institute of Animal Biotechnology, Hyderabad.</p>

<p>(A) Project Scientist – Level B (One Position)</p>

<p>Emoluments: Rs. 15600 + GP Rs. 5400 + 30 % HRA p.m. (Total emoluments will be Rs. 49,770/-p.m. for the duration of the project)</p>

<p>Essential Qualification: Candidates having M.V.Sc. in Veterinary Microbiology / Veterinary Pathology / Veterinary Public Health / Ph.D. degree in Life Sciences, Biotechnology, Molecular Biology or any other related field from the recognized university are eligible to apply.</p>

<p>The candidate should have a good academic record and research experience as evidenced from published in standard referred journals / patents.</p>

<p>Desirable: Candidates having research experience in the area of tissue culture, genomics, Transcriptomics and Advanced Molecular Biology will be given preference.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>(B) Research Associate in Bioinformatics (One position)</p>

<p>Fellowship: Rs. 22,000 + 30 % HRA</p>

<p>Essential Qualification: Candidates having Ph.D. degree or M.Tech. with three years of<br />experience in Bioinformatics, Computational Biology, Biotechnology, Life Sciences or any other related field are eligible to apply.</p>

<p>Desirable: Candidate having research experience in the area of next generation sequencing (NGS) data analysis, Genome wide association studies, Genomic selection, advance genomic data analysis etc., will be given preference. The candidate should have a good academic record and research experience as evidenced from published papers in standard journals / patents.</p>

<p>Age Limit: Not exceeding 30 years as on last date of the submission of the application.</p>

<p>Project Duration: The duration of the project is Three years and the positions are co- terminus with the duration of the project. (Initial appointment will be for one year and further extension will be granted based on annual review).</p>

<p>Mode of submission of application: Only online applications are to be submitted through<br />www.niab.org.in on or before 08 December, 2014. Link for online submission of applications will be available from 10 November 2014.</p>

<p>Advertisement: www.niab.org.in/Notifications/Advt_5_2014/Advt_5_2014.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36111/d3networktools-for-creating-d3-javascript-network-tree-dendrogram-and-sankey-graphs-from-r</guid>
	<pubDate>Fri, 06 Apr 2018 12:10:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36111/d3networktools-for-creating-d3-javascript-network-tree-dendrogram-and-sankey-graphs-from-r</link>
	<title><![CDATA[d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.]]></title>
	<description><![CDATA[<p><a href="http://bost.ocks.org/mike/">Mike Bostock</a><span>&rsquo;s&nbsp;</span><a href="http://d3js.org/">D3.js</a><span>&nbsp;is great for creating&nbsp;</span><a href="http://bl.ocks.org/mbostock/4062045">interactive network graphs</a><span>&nbsp;with JavaScript. The&nbsp;</span><a href="https://github.com/christophergandrud/d3Network">d3Network</a><span>&nbsp;package makes it easy to create these network graphs from&nbsp;</span><a href="http://www.r-project.org/">R</a><span>. The main idea is that you should able to take an R data frame with information about the relationships between members of a network and create full network graphs with one command.</span></p><p>Address of the bookmark: <a href="http://christophergandrud.github.io/d3Network/" rel="nofollow">http://christophergandrud.github.io/d3Network/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19249/bioinformatics-jrfrasrf-position-at-panjab-university</guid>
  <pubDate>Wed, 19 Nov 2014 20:19:49 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at PANJAB UNIVERSITY]]></title>
  <description><![CDATA[
<p>CENTRE FOR SYSTEMS BIOLOGY &amp; BIOINFORMATICS<br />UIEAST, PANJAB UNIVERSITY, CHANDIGARH</p>

<p>Applications are invited along with complete bio-data and attested copies of certificates of qualifications, experience etc. for the one post of Research Fellow and one post of Program Assistant under PURSE Grant of the University in Centre for Systems Biology &amp; Bioinformatics, UIEAST, Panjab University, Chandigarh which is tenable till the period of<br />the project.</p>

<p>Essential Qualification</p>

<p>For Research Fellow:-</p>

<p>M.Sc. in Systems Biology and Bioinformatics / Life Sciences with minimum 55% marks.</p>

<p>Preference will be given to NET/GATE/ICMR qualified candidates without fellowship however, candidates who have cleared the Panjab University Ph.D. entrance test in Systems Biology &amp; Bioinformatics will also be eligible.</p>

<p>For Program Assistant:-</p>

<p>The candidate must have M.Sc./M.Tech/MCA/PGDCA in Computer Science and must be able to handle LAN, Linex. Preference will be given to the candidate having experience in<br />System Administration.</p>

<p>Emoluments</p>

<p>For Research Fellow Rs. 12,500/- per month (Fixed)<br />For Program Assistant Rs. 12,500/- per month (Fixed)</p>

<p>Applications should be reach on or before 19-11-2014 in the office of the undersigned.</p>

<p>Interview will be held on 21-11-2014 in the office of the Coordinator, Centre for Systems Biology &amp; Bioinformatics, South Campus, Block-3, Sector-25, Panjab University, Chandigarh. No TA/DA will be paid.</p>

<p>Advertisement:</p>

<p>http://jobs.puchd.ac.in/includes/jobs/2014/20141110143634-Advertisement.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/37586/julia-programming-language-a-python-and-r-rival</guid>
	<pubDate>Sat, 25 Aug 2018 04:46:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/37586/julia-programming-language-a-python-and-r-rival</link>
	<title><![CDATA[Julia Programming Language, a Python and R rival]]></title>
	<description><![CDATA[<p>Big data has grown to become one of the most lucrative fields. In fact, data scientists are some of the most sought people. They are usually hired to analyze, control and parse large chunks of data. Implementing these actions using traditional techniques is not a walk in the park. This is why most data scientists prefer using programming languages such as R and Python. However, there is one more programming language that can do the job. That is Julia programming language.</p><p>What Is Julia Language?</p><p>Julia is a programming language that came into the limelight in 2012. It is a general-purpose programming language that was designed for solving scientific computations. Julia was meant to be an alternative to Python, R and other programming languages that were mainly used for manipulating data. This is because it has numerous features that can minimize the complexities of numerical computations.&nbsp;</p><p>Julia optimizes on the best features of Python and R while at the same time overlooks their weaknesses. This explains why it is viewed as an alternative to these programming languages. For instance, it utilizes the readability and simplicity of Python then performs faster.</p><p>Julia is the most preferred programming language for data scientists and mathematicians. This is because its core features are similar to the ones that are used on most data software. Also, the language is ideal for these two subjects because its syntax is similar to the standard mathematical formulas.</p><p>Key Features Of Julia Language<br />Uses JIT Compilation<br />Parallelism<br />Dynamic Typing<br />Simple Syntax<br />Allows Metaprogramming<br />Accessible to Libraries<br />-1-Array Indexing</p><p>Julia Vs Python And R Programming Languages<br />1. Speed<br />Julia is faster than both Python and R. This is a very critical aspect that is given special attention in the big data programming. The high speed of Julia is because of JIT compilers. You will need to install external libraries on Python to achieve similar speed.</p><p>2. Syntax<br />Julia has a math-friendly syntax. The syntax of this programming language is similar to the mathematical formulas hence can be used to perform mathematical and scientific computations. This syntax makes it easier to learn than Python.</p><p>3. Parallelism<br />Although both Python and R use parallelism, Julia uses a top-level parallelism. Julia allows the processor to perform to the optimum level than what Python and R can achieve.</p><p>4. Versatility<br />Julia programming language is more versatile than Python and R. It allows a programmer to move from different codes and functions with ease.</p><p>The only area that Python and R are superior to Julia is in terms of community. Given that Julia is a new programming language, it has a small community as compared to others which have been around for years.</p><p>In overall Julia programming language is a better alternative that you can use to handle Big data projects. Despite having a small community, it is one of those programming languages that you can easily learn.</p>]]></description>
	<dc:creator>Radha Agarkar</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38385/decipher-a-software-toolset-for-deciphering-and-managing-biological-sequences-efficiently-using-the-r</guid>
	<pubDate>Sun, 09 Dec 2018 19:06:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38385/decipher-a-software-toolset-for-deciphering-and-managing-biological-sequences-efficiently-using-the-r</link>
	<title><![CDATA[DECIPHER; a software toolset for deciphering and managing biological sequences efficiently using the R]]></title>
	<description><![CDATA[<p><span>DECIPHER is a software toolset that can be used for deciphering and managing biological sequences efficiently using the&nbsp;</span><a href="http://www.r-project.org/">R</a><span>&nbsp;programming language. The&nbsp;</span><a href="http://www.r-project.org/">R</a><span>&nbsp;package is distributed as platform independent source code under the&nbsp;</span><a href="http://www.gnu.org/copyleft/gpl.html">GPL version 3 license</a><span>. Some functionality of the program is accessible online through web tools.</span></p>
<p><span style="font-size: medium; text-align: justify;">&nbsp;</span></p><p>Address of the bookmark: <a href="http://www2.decipher.codes/" rel="nofollow">http://www2.decipher.codes/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38819/upsetr-an-r-package-for-the-visualization-of-intersecting-sets-and-their-properties</guid>
	<pubDate>Mon, 28 Jan 2019 18:38:44 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38819/upsetr-an-r-package-for-the-visualization-of-intersecting-sets-and-their-properties</link>
	<title><![CDATA[UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties]]></title>
	<description><![CDATA[<p>UpSetR generates static&nbsp;<a href="http://vcg.github.io/upset/">UpSet</a>&nbsp;plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as the number of elements in the aggregates and intersections, as well as additional summary statistics derived from subset or element attributes.</p>
<p>For further details about the original technique see the&nbsp;<a href="http://vcg.github.io/upset/about/">UpSet website</a>. You can also check out the&nbsp;<a href="https://gehlenborglab.shinyapps.io/upsetr/">UpSetR shiny app</a>.&nbsp;<a href="https://github.com/hms-dbmi/UpSetR-shiny">Here is the source code</a>&nbsp;for the shiny wrapper.</p>
<p>A&nbsp;<a href="https://github.com/ImSoErgodic/py-upset">Python package</a>&nbsp;called&nbsp;<a href="https://github.com/ImSoErgodic/py-upset">py-upset</a>&nbsp;to create UpSet plots has been created by GitHub user&nbsp;<a href="https://github.com/ImSoErgodic">ImSoErgodic</a>.</p><p>Address of the bookmark: <a href="https://github.com/hms-dbmi/UpSetR/" rel="nofollow">https://github.com/hms-dbmi/UpSetR/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19580/internship-program-for-bioinformatics-biotechnology-mba-mca-no-of-vacancy-5</guid>
  <pubDate>Mon, 15 Dec 2014 08:11:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[Internship Program for Bioinformatics / Biotechnology / MBA / MCA (No. Of Vacancy: 5)]]></title>
  <description><![CDATA[
<p>ArrayGen is offering an Internship Program for Post graduate Bioinformatics / Biotechnology / MBA / MCA students and professionals. ArrayGen Technologies provide an excellent opportunity to gain research experience and explore if a scientific career is right for you. Currently we offer positions to outstanding students interested in Next Generation Sequencing (NGS) data analysis or marketing or software development. Applications are accepted throughout the year. Accepted students will be notified through email.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r</guid>
	<pubDate>Thu, 29 Aug 2019 01:38:39 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r</link>
	<title><![CDATA[Retrieving Taxonomic Information with R]]></title>
	<description><![CDATA[<p>This vignette will introduce users to the retrieval of taxonomic information with&nbsp;<code>myTAI</code>. The&nbsp;<code>taxonomy()</code>&nbsp;function implemented in&nbsp;<code>myTAI</code>&nbsp;relies on the powerful package&nbsp;<a href="https://github.com/ropensci/taxize">taxize</a>. Nevertheless, taxonomic information retrieval has been customized for the&nbsp;<code>myTAI</code>&nbsp;standard and for organism specific information retrieval.</p>
<p>Specifically, the&nbsp;<code>taxonomy()</code>&nbsp;function implemented in&nbsp;<code>myTAI</code>&nbsp;can be used to classify genomes according to phylogenetic classification into Phylostrata (Phylostratigraphy) or to retrieve species specific taxonomic information when performing Divergence Stratigraphy (see&nbsp;<a href="https://cran.r-project.org/web/packages/myTAI/vignettes/Introduction.html">Introduction</a>&nbsp;for details).</p><p>Address of the bookmark: <a href="https://cran.r-project.org/web/packages/myTAI/vignettes/Taxonomy.html" rel="nofollow">https://cran.r-project.org/web/packages/myTAI/vignettes/Taxonomy.html</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19792/irishgrid-irish-grid-mapping-system</guid>
	<pubDate>Fri, 26 Dec 2014 07:53:24 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19792/irishgrid-irish-grid-mapping-system</link>
	<title><![CDATA[irishgrid: Irish Grid Mapping System]]></title>
	<description><![CDATA[<p>Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format.</p>
<p>Originally design to map the location of objects in a 10 km map IrishGrid includes:</p>
<ul>
<li>native support of the Irish Grid System (see <a href="http://www.osi.ie/">http://www.osi.ie/</a>)</li>
<li>optimize for speed (there's as less as possible data to conversion)</li>
<li>customized color functions</li>
</ul>
<p>https://code.google.com/p/irishgrid/downloads/detail?name=irishgrid.pl</p><p>Address of the bookmark: <a href="https://code.google.com/p/irishgrid/" rel="nofollow">https://code.google.com/p/irishgrid/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40463/%E2%80%98dockr%E2%80%99-the-r-container</guid>
	<pubDate>Mon, 23 Dec 2019 09:56:49 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40463/%E2%80%98dockr%E2%80%99-the-r-container</link>
	<title><![CDATA[‘dockr’: the R container]]></title>
	<description><![CDATA[<p><code>dockr</code> 0.8.6 is now available on CRAN. <code>dockr</code> is a minimal toolkit to build a lightweight Docker container image for your R package, in which the package itself is available. The Docker image seeks to mirror your R session as close as possible with respect to R specific dependencies. Both dependencies on CRAN R packages as well as local non-CRAN R packages will be included in the Docker container image.</p>
<p>If you want to know, how Docker works, and why you should consider using Docker, please take a look at the <a href="https://www.docker.com/why-docker" target="_blank">Docker website</a>.</p><p>Address of the bookmark: <a href="https://www.docker.com/why-docker" rel="nofollow">https://www.docker.com/why-docker</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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