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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29601?offset=1440</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/17898/ensembl-77-has-been-released</guid>
	<pubDate>Sun, 05 Oct 2014 16:38:58 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/17898/ensembl-77-has-been-released</link>
	<title><![CDATA[Ensembl 77 has been released!]]></title>
	<description><![CDATA[<h3>New updates in e!77 !!</h3><ul>
<li>Updated&nbsp;<a href="http://e77.ensembl.org/Homo_sapiens/Info/Index" title="Human species page">human</a>&nbsp;gene set (GENCODE 21)</li>
<li>Updated <a href="http://e77.ensembl.org/Rattus_norvegicus/Info/Index">rat</a> gene set&nbsp;including manual annotation from HAVANA</li>
<li>New species:&nbsp;<a href="http://e77.ensembl.org/Chlorocebus_sabaeus/Info/Index">Vervet-African green monkey</a></li>
<li>Imported Transcript Support Levels (TSLs) from UCSC&nbsp;for&nbsp;<a href="http://e77.ensembl.org/Homo_sapiens/Info/Index">human</a>&nbsp;and&nbsp;<a href="http://e77.ensembl.org/Mus_musculus/Info/Index">mouse</a></li>
<li>Imported <a href="http://appris.bioinfo.cnio.es/" target="_blank" title="APPRIS">APPRIS</a> flag for&nbsp;<a href="http://e77.ensembl.org/Homo_sapiens/Info/Index">human</a> and <a href="http://e77.ensembl.org/Mus_musculus/Info/Index">mouse</a></li>
<li>Updated <a href="http://e77.ensembl.org/Poecilia_formosa/Info/Index" title="Amazon molly">Amazon molly</a> gene set</li>
</ul><p>Find more at http://www.ensembl.info/blog/2014/10/02/ensembl-77-has-been-released/</p>]]></description>
	<dc:creator>Seema Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41009/genomics-public-data-links</guid>
	<pubDate>Thu, 13 Feb 2020 00:20:00 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41009/genomics-public-data-links</link>
	<title><![CDATA[genomics public data links !]]></title>
	<description><![CDATA[<p>List of publically available databases on google server.</p>
<p>More at <a href="https://software.broadinstitute.org/gatk/download/bundle">https://software.broadinstitute.org/gatk/download/bundle</a></p>
<p><a href="ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/">ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/</a>.</p>
<p><a href="ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/">ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/</a></p><p>Address of the bookmark: <a href="https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0?pli=1" rel="nofollow">https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0?pli=1</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4433/upcoming-r-webinar</guid>
	<pubDate>Wed, 11 Sep 2013 10:30:16 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4433/upcoming-r-webinar</link>
	<title><![CDATA[Upcoming R Webinar]]></title>
	<description><![CDATA[<p>This webinar will describe an R based approach to considerably speed GWAS computation time on a notebook book computer.</p><p>More http://www.extension.org/pages/68354/upcoming-webinar:-fast-semi-parallel-linear-and-logistic-regression-for-genome-wide-association-studi#.UjCL9azyPqV</p><p>Register @ https://www1.gotomeeting.com/register/237810425</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18380/jrfsrf-at-university-of-hyderabad</guid>
  <pubDate>Fri, 17 Oct 2014 01:55:44 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF/SRF at University of Hyderabad]]></title>
  <description><![CDATA[
<p>Applications are invited for the following post of Junior Research Fellow (temporary position coterminous with the project) under DBT funded research project on ““Understanding the functions of α1β1γ1/α2β1γ1 selective AMPK Modulators in dissecting the pharmacological role of these isozymes in metabolic diseases”</p>

<p>Qualified and interested candidates can send their curriculum vitae by e-mail to hr@drils.org on or before 27th October 2014 mention in the subject line of the mail the following code: AMPK-Biology.</p>

<p>Selected candidates will be called for a personal interview to Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad. The selected candidate is expected to report within two weeks from the date of selection to start work on the project.</p>

<p>Junior Research Fellowship (Molecular Modeling/Biology) for two years and Senior Research fellowship for one year</p>

<p>Junior Research Fellowship: Rs. 15,600/- (consolidated) per month for first two years.<br />Senior Research Fellowship: Rs. 18,200/-(consolidated) per month for the 3rd year.</p>

<p>Duration: The duration of the fellowship is for three years. However, the performance of the candidate will be reviewed after the completion of every year and the fellowship will be renewed only upon satisfactory performance.</p>

<p>Responsibilities:</p>

<p>1) Literature search.<br />2) Design, plan and execute experiments under the supervision of the scientist.<br />3) Provide scientific support to the scientist in his/her research activities.<br />4) Book keeping and maintenance of stocks and consumables.</p>

<p>Essential Qualifications:</p>

<p>Required: M.Sc. in Microbiology/Biotechnology/Bioinformatics or any other related branch of basic Sciences from a recognized university/institute with a consistent academic record of minimum 60% aggregate in all qualifying examinations. The candidate should be NET qualified for lectureship. The candidate should be motivated to work with dedication.</p>

<p>Desirable: expertise/experience in both Molecular Modeling and Molecular Biology.</p>

<p>Experience: 0-2 years in the areas of Molecular Modeling and/or Molecular Biology and cell biology and Biochemistry.</p>

<p>Preferable: Relevant research experience as evident from thesis/dissertation/project work.</p>

<p>Advertisement: http://www.ilsresearch.org/userfiles/Junior%20REsearch%20Fellowship%20-%20AMPK(Biology).pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33592/circular-plots-in-r</guid>
	<pubDate>Mon, 19 Jun 2017 06:20:27 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33592/circular-plots-in-r</link>
	<title><![CDATA[Circular plots in R]]></title>
	<description><![CDATA[<div>
<p><strong>Circular plots</strong>&nbsp;are useful to represent complicated informations. They are used in 2 specific cases: when you have long axis and numerous categories, and when you want to show relationships between elements. The&nbsp;<a href="http://circos.ca/images/samples/" target="_blank">circos gallery</a>&nbsp;displays several examples of circular plots, what gives a nice overview of the possibilities. Circos is the most famous</p>
</div>
<div>
<p>tool to create circular plots. Thanks to&nbsp;<a href="https://www.linkedin.com/in/zuguanggu" target="_blank">Zuguang Gu</a>, the&nbsp;<a href="https://cran.r-project.org/web/packages/circlize/vignettes/circlize.pdf" target="_blank">Circlize library</a>&nbsp;makes the circos functions available in R! It implements low-level graphic functions for adding common graphics in a circular layout. This page aims to learn you how to use the library, so I strongly advise to read the graphics in the proposed order!</p>
<p><img src="http://www.r-graph-gallery.com/wp-content/uploads/2016/03/122_Circlize_package.png" width="480" height="480" alt="image" style="border: 0px;"></p>
</div>
<p>http://www.r-graph-gallery.com/portfolio/circular-plot/</p><p>Address of the bookmark: <a href="http://www.r-graph-gallery.com/portfolio/circular-plot/" rel="nofollow">http://www.r-graph-gallery.com/portfolio/circular-plot/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34396/pore-an-r-package-for-the-visualization-and-analysis-of-nanopore-sequencing-data</guid>
	<pubDate>Thu, 23 Nov 2017 09:55:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34396/pore-an-r-package-for-the-visualization-and-analysis-of-nanopore-sequencing-data</link>
	<title><![CDATA[poRe: an R package for the visualization and analysis of nanopore sequencing data]]></title>
	<description><![CDATA[<p><strong>Motivation:</strong>&nbsp;The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data.</p>
<p><strong>Results:</strong>&nbsp;Here we present poRe, a package for R that enables users to manipulate, organize, summarize and visualize MinION nanopore sequencing data. As a package for R, poRe has been tested on Windows, Linux and MacOSX. Crucially, the Windows version allows users to analyse MinION data on the Windows laptop attached to the device.</p>
<p><strong>Availability and implementation:</strong>&nbsp;poRe is released as a package for R at&nbsp;<a href="http://sourceforge.net/projects/rpore/" target="">http://sourceforge.net/projects/rpore/</a>&nbsp;. A tutorial and further information are available at&nbsp;<a href="https://sourceforge.net/p/rpore/wiki/Home/" target="">https://sourceforge.net/p/rpore/wiki/Home/</a></p>
<p><strong>Contact:</strong><a href="mailto:mick.watson@roslin.ed.ac.uk" target="">mick.watson@roslin.ed.ac.uk</a></p><p>Address of the bookmark: <a href="https://academic.oup.com/bioinformatics/article/31/1/114/2365693" rel="nofollow">https://academic.oup.com/bioinformatics/article/31/1/114/2365693</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/18580/faculty-positions-at-central-university-of-punjab-bathinda</guid>
  <pubDate>Wed, 22 Oct 2014 10:45:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty Positions at CENTRAL UNIVERSITY OF PUNJAB, BATHINDA]]></title>
  <description><![CDATA[
<p>Advertisement No. T/NT-01 (2014)</p>

<p>Faculty Positions<br />The Central University of Punjab (CUP), Bathinda will be having the Schools and Departments as given in Table-I. The University invites applications from eligible candidates for the posts of Professors (Pay Band Rs. 37400-67000 with AGP of Rs. 10, 000/-), Associate Professors (Pay Band Rs.37400-67000 with AGP of Rs. 9,000/-) and Assistant Professors (Pay Band Rs.15600-39100 with AGP of Rs. 6,000/-)</p>

<p>POSITION AVAILABLE IN THE AREA OF SPECIALIZTION</p>

<p>3. Bioinformatics,</p>

<p>Procedure to apply: Application forms along with API form complete in all respect along with necessary documents and application fee of Rs. 750/-. (Rs. 250/- for Scheduled Caste/Scheduled Tribe/Person with disabilities) should be sent to:</p>

<p>Registrar (Officiating)<br />Central University of Punjab<br />City Campus, Mansa Road<br />Bathinda-151 001</p>

<p>Application forms from the prospective candidates are accepted upto November 10, 2014.</p>

<p>Based on the qualification of the candidates and the need of the university, the applications received will be processed through appropriately constituted selection committees shortly. Minimum qualification can be relaxed in case of exceptionally outstanding candidate. For further details visit www.cup.ac.in; www.centralunipunjab.com; www.cup.edu.in</p>

<p>The candidate should download the application form available at website www.cup.ac.in;<br />www.centralunipunjab.com; and submit it complete in all respects on or before 10th November 2014.</p>

<p>Those who have applied earlier need to submit Academic Performance Index (API) form, 5 copies of Summary of the Application Form (available at: www.cup.ac.in; www.centralunipunjab.com and Updated CV if not updated recently (without application fee).</p>

<p>http://cup.edu.in/Faculty_details_and_general_instructions.pdf</p>

<p>http://cup.edu.in/Final%20Application%20and%20summary%20Sheet%20and%20Api%20form.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35437/dupradar-package</guid>
	<pubDate>Sun, 04 Feb 2018 14:28:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35437/dupradar-package</link>
	<title><![CDATA[dupRadar package]]></title>
	<description><![CDATA[<p><span>The&nbsp;</span><em>dupRadar</em><span>&nbsp;package gives an insight into the duplication problem by graphically relating the gene expression level and the duplication rate present on it. Thus, failed experiments can be easily identified at a glance</span></p><p>Address of the bookmark: <a href="https://bioconductor.org/packages/3.7/bioc/vignettes/dupRadar/inst/doc/dupRadar.html" rel="nofollow">https://bioconductor.org/packages/3.7/bioc/vignettes/dupRadar/inst/doc/dupRadar.html</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

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