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	<link>https://bioinformaticsonline.com/related/29679?offset=340</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11656/faculty-post-at-zhejiang-university</guid>
  <pubDate>Tue, 10 Jun 2014 03:40:40 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty post at Zhejiang University]]></title>
  <description><![CDATA[
<p>Zhejiang University (ZJU) is seeking faculty candidates for its newly launched, highly competitive and well funded “Hundred Talents Program”. This search covers all colleges and departments at ZJU. Applicants, expected to be about 35 years old, should hold PhD degree, and postdoctoral experiences are preferred for applicants in most fields. Applicants should have demonstrated commitment to excellence in teaching and research at a level comparable to the academic achievement of assistant professor or associate professor in world-renowned universities. Successful candidates must work full-time and are expected to establish internationally competitive and independent research program in cutting-edge areas of the relevant field at ZJU.</p>

<p>As one of the leading research-intensive universities in China, ZJU is located in the beautiful city of Hangzhou. Successful candidates will be employed as Principal Investigators and are qualified to supervise doctoral students. ZJU will offer an internationally competitive salary and the opportunity to purchase university's apartment at a price much lower than the market price, and will provide office and laboratory spaces as well as internationally competitive research startup packages.</p>

<p>Qualified applicants are strongly encouraged to submit their applications electronically to tr@zju.edu.cn. Applicants should include the following materials in pdf format: a comprehensive CV, a statement of research and teaching plan, and a list of 3 to 5 references with detailed contact information.</p>

<p>Contact：Talents Office, ZJU</p>

<p>Tel：+86-571-88981345, +86-571-88981390</p>

<p>Fax：+86-571-88981976</p>

<p>E-mail:tr@zju.edu.cn</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26179/alignment-of-closely-related-whole-genomesscaffolds</guid>
	<pubDate>Fri, 29 Jan 2016 10:37:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26179/alignment-of-closely-related-whole-genomesscaffolds</link>
	<title><![CDATA[Alignment of closely related whole genomes/scaffolds]]></title>
	<description><![CDATA[<p>With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in length, to aid in the study of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments.</p>
<p>Please report new whole genome alignment tools under comment sections.</p><p>Address of the bookmark: <a href="http://www.cs.utoronto.ca/~brudno/721.full.pdf" rel="nofollow">http://www.cs.utoronto.ca/~brudno/721.full.pdf</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/11592/xampp-starting-apache-fail-ubuntu</guid>
	<pubDate>Sat, 07 Jun 2014 05:52:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/11592/xampp-starting-apache-fail-ubuntu</link>
	<title><![CDATA[XAMPP: Starting Apache fail Ubuntu]]></title>
	<description><![CDATA[<p>Once you install XAMMP on linux, the most common problem you face is Apache failure. To fix the issues please use following command to first stop and then again start it.</p><p>sudo /etc/init.d/apache2 stop</p><p>sudo /etc/init.d/mysql stop</p><p>sudo /etc/init.d/proftpd stop</p><p>sudo /opt/lampp/lampp start</p><p>&nbsp;</p><p><strong>PhpMyAdmin &ldquo;Wrong permissions on configuration file, should not be world writable!&rdquo;</strong></p><p>Once the Xammp is installed, it might be possible to set up the configuration file in writable mode. Try the following steps:</p><p>Just chmod 0755 the file</p><pre>sudo chmod 0755 config.inc.php</pre>]]></description>
	<dc:creator>Ram Yash Pal</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/42327/blaxter-lab</guid>
  <pubDate>Thu, 19 Nov 2020 08:05:28 -0600</pubDate>
  <link></link>
  <title><![CDATA[Blaxter Lab]]></title>
  <description><![CDATA[
<p>Using these high quality genomes we explore</p>

<p>the evolutionary history of genes and species, building phylogenetic trees of life<br />the contrasting roles of horizontal gene transfer and introgression in shaping evolution<br />the biology of symbioses, especially symbioses between eukaryotes and bacteria, and between parasites and their hosts<br />the processes that drive the evolution of pattern in the structure of chromosomes<br />the diversity of meiofauna, particularly tardigrades, nematodes and other Ecdysozoa<br />the genomics of extremophilia</p>

<p>More at https://www.sanger.ac.uk/group/blaxter-group/</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12594/faculty-positions-at-central-university-of-punjab</guid>
  <pubDate>Mon, 07 Jul 2014 23:33:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty Positions at Central University of Punjab]]></title>
  <description><![CDATA[
<p>Faculty Positions: Rolling/Open Advertisement Advt.No: T-10 (2013)</p>

<p>Pay Scale: Pay Band Rs.15600-39100 with AGP of Rs.6,000/-</p>

<p>Essential Qualifications for Professors, Associate Professors, and Assistant Professors: As per “UGC REGULATIONS ON MINIMUM QUALIFICATIONS FOR APPOINTMENT OF TEACHERS AND OTHER ACADEMIC STAFF IN UNIVERSITIES AND COLLEGES AND MEASURES FOR THE MAINTENANCE OF STANDARDS IN HIGHER EDUCATION 2010“ and the 2nd Amendments to the regulation issued in June 2013.</p>

<p>For details: http://www.ugc.ac.in/oldpdf/regulations/revised_finalugcregulationfinal10.pdf http://www.ugc.ac.in/pdfnews/8539300_English.pdf and University rules.</p>

<p>Procedure to apply:</p>

<p>Application forms along with API form complete in all respect along with necessary documents and application fee of Rs. 500/-. (Rs. 250/- for Scheduled Caste/Scheduled Tribe/Person with disabilities) should be sent to:</p>

<p>Registrar, Central University of Punjab, City Campus, Mansa Road, Bathinda-151001</p>

<p>For more info visit: http://www.centralunipunjab.com/Teaching/Final%20Details-t10-2013.pdf, http://www.centralunipunjab.com/Teaching/Advertisement-t10-2013.jpg</p>

<p>Last Apply Date: 31 Dec 2014</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/45231/the-giant-who-walked-across-ancient-taiwan</guid>
	<pubDate>Sat, 15 Aug 2026 14:48:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/45231/the-giant-who-walked-across-ancient-taiwan</link>
	<title><![CDATA[The Giant Who Walked Across Ancient Taiwan]]></title>
	<description><![CDATA[<p>Thousands of years ago, long before Taiwan became the island we know today, a large-bodied human walked across the landscape. We will probably never know what this individual looked like or where they travelled. But part of their story survived&mdash;in two ancient leg bones recovered from the seabed of the Penghu Channel.</p><p>The bones sat quietly in a fossil collection for years. One was part of a femur; the other, a tibia. They looked like the remains of an unusually large ancient human. But who did they belong to?</p><p>The answer came from an unexpected source: ancient proteins.</p><p>Using palaeoproteomic analysis, researchers found a molecular signature in both bones that matches the Denisovan lineage. The discovery identifies the two Penghu fossils as Denisovan and, more importantly, gives scientists their first substantial glimpse of the Denisovans' body size.</p><p>And the picture is striking.</p><p>One individual is estimated to have been about 1.8 metres tall and weighed around 83 kilograms. The other may have reached 1.9 metres and about 91 kilograms. Their leg bones rank among the largest known from Pleistocene Homo.</p><p>These were not small or fragile people.</p><p>They were powerful, heavily built humans moving through Ice Age eastern Asia.</p><p>But the bones tell an even more intriguing story. The femur has a pronounced ridge called a femoral pilaster&mdash;a feature particularly associated with modern human hunter-gatherers and increased mechanical strength during terrestrial movement. Why would a Denisovan, with an otherwise strongly archaic skeleton, possess this modern-looking feature?</p><p>Perhaps these Denisovans travelled extensively across the landscape. Perhaps their bodies were shaped by a demanding hunting lifestyle. Or perhaps, the researchers suggest, genetic exchange with early modern humans contributed to some of these features.</p><p>Their extraordinary size raises another mystery. A common expectation in human evolution is that populations living closer to the tropics tend to be smaller. Yet these Denisovans lived around 23&deg;N latitude and were exceptionally large. The researchers argue that cold climate alone cannot explain their size, pointing instead toward lifestyle and diet&mdash;including evidence that at least one Penghu individual relied heavily on meat.</p><p>So, piece by piece, the Denisovans are becoming less mysterious.</p><p>What was once a shadowy population known mainly from DNA is beginning to take physical form: large, robust, mobile humans who lived across eastern Asia and whose bodies carried a fascinating mixture of ancient and modern traits.</p><p>And perhaps the most remarkable part of this story is where it began&mdash;not in a spectacular cave discovery, but with two weathered bones lying among thousands of fossils.</p><p>The Denisovans may have left no written history. But their bones are beginning to tell one.</p><p>*Note: This research is currently a bioRxiv preprint and has not yet undergone peer review.&nbsp; Detail at&nbsp;https://www.biorxiv.org/content/10.64898/2026.08.07.743438v1.full.pdf</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/12787/integrative-genomics-viewer-igv-tutorial</guid>
	<pubDate>Sat, 12 Jul 2014 15:16:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/12787/integrative-genomics-viewer-igv-tutorial</link>
	<title><![CDATA[Integrative Genomics Viewer (IGV) tutorial]]></title>
	<description><![CDATA[<p>The <a href="http://www.broadinstitute.org/igv/">Integrative Genomics Viewer (IGV)</a> from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants.</p>
<p>http://www.broadinstitute.org/igv/</p><p>Address of the bookmark: <a href="https://wikis.utexas.edu/display/bioiteam/Integrative+Genomics+Viewer+%28IGV%29+tutorial" rel="nofollow">https://wikis.utexas.edu/display/bioiteam/Integrative+Genomics+Viewer+%28IGV%29+tutorial</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/45296/luo-lab-symbiosis-genomics-evolution</guid>
  <pubDate>Wed, 09 Sep 2026 03:30:30 -0500</pubDate>
  <link></link>
  <title><![CDATA[Luo Lab | Symbiosis Genomics &amp; Evolution]]></title>
  <description><![CDATA[
<p>We study the evolutionary genomics of marine invertebrates to understand their origins and diversity. Our lab combines high-throughput sequencing and single-cell transcriptomics to explore a wide range of non-model systems. We are particularly interested in how evolutionary novelty arises, with a focus on animal development and photosymbiosis.</p>

<p>Research Directions</p>

<p>Stony corals: evolution of novelty and photosymbiosis</p>

<p>Symbiotic acoels: cell type evolution and photosymbiosis</p>

<p>Animal genomes: structural evolution and gene regulation</p>

<p>https://sgel.biodiv.tw/home</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/12963/cosmos-our-workflow-management-system-for-ngs-data</guid>
	<pubDate>Wed, 23 Jul 2014 07:29:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/12963/cosmos-our-workflow-management-system-for-ngs-data</link>
	<title><![CDATA[COSMOS, our workflow management system for NGS data]]></title>
	<description><![CDATA[<p><strong>COSMOS</strong>, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via <a href="http://bioinformatics.oxfordjournals.org/content/early/2014/06/29/bioinformatics.btu385.abstract">Advance Access</a> in <em>Bioinformatics</em> (<a href="http://scholar.harvard.edu/lancaster/publications/cosmos-python-library-massively-parallel-workflows">Gafni et al. 2014</a>).&nbsp; It is also available for download for non-commercial academic and research purposes at:</p>
<p><strong>&nbsp;<a href="http://cosmos.hms.harvard.edu/">http://cosmos.hms.harvard.edu/</a></strong>.</p><p>Address of the bookmark: <a href="https://cosmos.hms.harvard.edu/" rel="nofollow">https://cosmos.hms.harvard.edu/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4546/sowdhamini-lab</guid>
  <pubDate>Sun, 15 Sep 2013 09:19:12 -0500</pubDate>
  <link></link>
  <title><![CDATA[SOWDHAMINI Lab]]></title>
  <description><![CDATA[
<p>Genome sequencing projects have enormous potential for benefiting human endeavors. However, just as acquiring a language's vocabulary does not enable one to speak it, databases that list the amino acid composition of proteins do not directly tell us much about these proteins' higher-level structure and function. The most productive way to indirectly exploit these databases has been to start with the small number of proteins that are fully-characterised and to assume that other "similar" proteins will have a related structure and function. Proteins with very similar amino acid sequence are "no-brainers", but the real test, which our group largely focuses on, is to detect the "essential" similarity in proteins whose non-critical sections have experienced random rearrangements during evolution. In such cases functionally similar proteins may have less than 25% sequence overlap.</p>

<p>More @ http://www.ncbs.res.in/sowdhamini/groups_sowdhamini.htm</p>
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