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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29679?offset=770</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/14186/pybedtools</guid>
	<pubDate>Wed, 20 Aug 2014 01:03:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/14186/pybedtools</link>
	<title><![CDATA[pybedtools]]></title>
	<description><![CDATA[<p>pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomic interval manipulation or "genome algebra". pybedtools extends BEDTools by offering feature-level manipulations from with Python. See full online documentation, including installation instructions, at http://pythonhosted.org/pybedtools/.</p><p>More at http://pythonhosted.org/pybedtools/</p><p>A powerful toolset for genome arithmetic.http://code.google.com/p/bedtools/</p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/33903/visiting-scientist-computational-genomics</guid>
  <pubDate>Mon, 17 Jul 2017 07:20:18 -0500</pubDate>
  <link></link>
  <title><![CDATA[Visiting Scientist - Computational Genomics]]></title>
  <description><![CDATA[
<p>ICRISAT is a non-profit, non-political organization that conducts agricultural research for development in Asia and sub-Saharan Africa with a wide array of partners throughout the world. ICRISAT and its partners help empower those living in the semi-arid tropics, especially smallholder farmers, to overcome poverty, hunger, malnutrition and a degraded environment through more efficient and profitable agriculture. </p>

<p>ICRISAT is headquartered in Patancheru near Hyderabad, India, with two regional hubs and five country offices in sub-Saharan Africa. ICRISAT, established in 1972, is a member of the CGIAR Consortium. For more details, see www.icrisat.org.</p>

<p>Job Responsibilities:<br />Planning and execution of different NGS/genomics data analysis<br />Apply, maintain, and support cutting-edge pipelines for the analysis and interpretation of NGS data<br />Analyze large-scale genomic datasets generated internally and through collaboration with others<br />Genome wide analysis- LD analysis, hapmap, genetic map construction and qtl mapping<br />Expression analysis based on RNA-seq, gene ontology and metabolic pathway data<br />Sequence level analysis like gene family analysis, orthology/paralogy etc.<br />Familiarity with genomic and biological information databases<br />Compilation and interpretation of results and writing reports<br />Experience working independently and in a team environment<br />Requirements:</p>

<p>PhD or M.Sc with 2-3 years experience from reputed institute in the area of life science or similar Knowledge in Next Generation Sequencing (NGS) data analysis. Should be familiar with various sequencing platforms. Sound knowledge of genomics and molecular biology is must. Proficient in any one of the programming/scripting in languages: Python, Perl, PHP, R, Shell Scripting. Must be experienced in working on Linux and CLI environment. Ability to work as team as well as independently with minimal support. Fluency in spoken and written English is essential. </p>

<p>NGS techniques like sequence alignment, variant calling based on whole genome re-sequencing and genotyping-by-sequencing (GBS), RNA-Seq/transcriptome analysis<br />Knowledge of various standard NGS related tool<br />Ability to solve complex problems in advanced genomics research areas<br />Ease and interest in working with people from diverse backgrounds<br />Excellent oral/written communication and interpersonal/networking skills<br />General: <br />This position is contract for a period of two years.</p>

<p>How to apply:<br />Applicants should apply on or before 27-July-2017, with latest Curriculum Vitae, and the names and contact information of three references that are knowledgeable about your professional qualifications and work experience. All applications will be acknowledged, however only short listed candidates will be contacted<br />Please CLICK HERE to submit your application. <br />ICRISAT is an equal opportunity employer</p>

<p>http://icrisat.careersitemanager.com/job-listings-Visiting-Scientist-Computational-Genomics-ICRISAT-Hyderabad-Secunderabad-2-to-4-years-060717000278</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/34929/shendurelab</guid>
  <pubDate>Thu, 28 Dec 2017 09:57:50 -0600</pubDate>
  <link></link>
  <title><![CDATA[ShendureLab]]></title>
  <description><![CDATA[
<p>The mission of our lab is to develop and apply new technologies and methods for genetics, genomics and molecular biology. Most of our work exploits next-generation DNA sequencing which is effectively emerging as a broadly enabling microscope for the measurement of biological phenomena. Our ongoing work generally falls into six areas. These are listed below as links to representative publications in each area.</p>

<p>Developing New Molecular Methods</p>

<p>Genomic Approaches to Developmental Biology</p>

<p>Massively Parallel Functional Genomics</p>

<p>Translating Genomics to the Clinic</p>

<p>Genetic Basis of Human Disease</p>

<p>Genome Sequencing Technologies</p>

<p>http://krishna.gs.washington.edu/index.html<br />http://www.gs.washington.edu/faculty/shendure.htm</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/14904/bioinformatics-jrfsrf-position-at-iari</guid>
  <pubDate>Thu, 04 Sep 2014 04:14:01 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at IARI]]></title>
  <description><![CDATA[
<p>DIVISION OF NEMATOLOGY<br />INDIAN AGRICULTURAL RESEARCH INSTITUTE<br />NEW DELHI 110012<br />Applications are invited for the posts of one Junior<br />Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics - insilico resource development”. The project is for a period of three years. </p>

<p>Essential qualifications for JRF<br />: M. Sc. in Bioinformatics with experience in Proteomics, genomics and structural biology. Knowledge of programming language, pearl and database – HTML, CSS,php and Java script.<br />Essential qualifications for Research Associate:<br />MSc/MTech in Bioinformatics with three years experience or Ph.D in Bioinformatics with experience in proteomics, genomics and structural biology. Knowledge of programming language, perl and database<br />– HTML, CSS, Java script. NGS sequence assembly and analysis and algorithm designing.<br />Age limit : 35 years maximum (5 year relaxation for SC/ST and women candidates)<br />Emoluments:<br />JRF: 16,000 + 30% HRA<br />.<br />Res Assoc: Rs22,000 + 30% HRA<br />The post is purely temporary in nature and is co-terminus with the project. The appointment would be initially for one year and may be extended further upon satisfactory performance.<br />Interested candidates<br />should send the duly filled application forms (format in the following page ) so as to reach on or before 20.9.2014 along with all the relevant documents.</p>

<p>More at http://www.iari.res.in/files/JRF_RA-03092014-20140903-135319.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37579/cbs-comparative-microbial-genomics-group-biotools-download-page</guid>
	<pubDate>Wed, 22 Aug 2018 21:59:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37579/cbs-comparative-microbial-genomics-group-biotools-download-page</link>
	<title><![CDATA[CBS Comparative Microbial Genomics group - BioTools download page]]></title>
	<description><![CDATA[<div id="section2">
<p>he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a customized operating system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system can be installed on a virtual computer, allowing the user to run the system alongside any other operating system. Source codes for all programs are provided under GNU license, which makes it possible to transfer the programs to other systems if so desired. We here demonstrate the package by comparing and analyzing the diversity within the class&nbsp;<em>Negativicutes</em>, represented by 31 genomes including 10 genera. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST and graphical analyses of DNA structures.</p>
<p>&nbsp;Paper:&nbsp;http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060120</p>
</div>
<div id="section3"><a name="" title="Conclusion"></a><span></span></div><p>Address of the bookmark: <a href="http://www.cbs.dtu.dk/biotools/CMGtools/" rel="nofollow">http://www.cbs.dtu.dk/biotools/CMGtools/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/15000/which-mathstatistics-programming-languageapplication-do-you-most-frequently-use-in-bioinformatics</guid>
	<pubDate>Thu, 04 Sep 2014 17:46:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/15000/which-mathstatistics-programming-languageapplication-do-you-most-frequently-use-in-bioinformatics</link>
	<title><![CDATA[Which math/statistics programming language/application do you most frequently use in bioinformatics?]]></title>
	<description><![CDATA[<p>I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?</p>]]></description>
	<dc:creator>John Parker</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17186/urdip-pune-bioinformatics-srfpa-openings</guid>
  <pubDate>Sat, 20 Sep 2014 20:48:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[URDIP Pune Bioinformatics SRF/PA Openings]]></title>
  <description><![CDATA[
<p>CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS<br />NCL Campus, S.No.113,114, Pashan, Pune 411 008</p>

<p>ADVERTISEMENT NO. - URDIP/ 5/2014</p>

<p>Learning opportunity for young Science and Engineering professionals to make a career in Information Science Industry CSIR has set up a Unit for Research and Development of Information Products (CSIR-URDIP) at Pune to work in the area of Scientific Informatics (ChemBioinformatics/Patent Informatics/Phytoinformatics/Toxinformatics) and related<br />software development projects.</p>

<p>Applications are invited from CSIR - UGC NET Qualified Candidates for consideration as Project Fellow (PF) and/or Senior Project Fellow (SPF) based on the experience to work on existing and new projects at CSIRURDIP.</p>

<p>Project Fellow</p>

<p>    Remuneration - (Rs. 16,000.00 + 20% HRA)</p>

<p>    M. Sc. In Biochemistry/Microbiology/Bioinformatics [Post-code A02] only with minimum of 55% marks</p>

<p>Senior Project Fellow</p>

<p>    Remuneration - (Rs. 18,000.00 + 20% HRA)</p>

<p>    M. Sc. in Biochemistry/Microbiology/Bioinformatics [Post-code A05] only with minimum of 55% marks plus two years research or relevant informatics experience</p>

<p>Please visit www.urdip.res.in/career.htm to apply online by 30th September, 2014.</p>

<p>Successful candidates who have appeared for NET exam in 2012 and 2013 are only eligible to apply.</p>

<p>Advertisement: http://115.112.95.114/urhr/download/Advt5_2014.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42588/postdoc-in-genomics-of-pipefishes-and-seahorses-at-nsf-funded-postdoctoral-project-in-adam-jones-lab</guid>
  <pubDate>Thu, 07 Jan 2021 21:22:24 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoc in Genomics of Pipefishes and Seahorses at NSF-funded postdoctoral project in Adam Jones' Lab]]></title>
  <description><![CDATA[
<p>An NSF-funded postdoctoral position is available in Adam Jones' Lab<br />at the University of Idaho to study the evolution and development of<br />the male's brood pouch in syngnathid fishes (seahorses, pipefishes<br />and seadragons). The project is being conducted in collaboration<br />with Dr. William Cresko's group at the University of Oregon. The<br />postdoc will be involved in studies of comparative genomics across<br />the family Syngnathidae, investigations of brood pouch morphology, and<br />characterization of the brood pouch microbiome. The position will be<br />funded for two years, with the possibility of a third year. The postdoc<br />will be based at the University of Idaho and will interact extensively<br />with the Cresko Lab at the University of Oregon.</p>

<p>The University of Idaho is in Moscow, a small college town located in<br />Northern Idaho on the Washington border. Moscow is widely considered to<br />be a great place to live, and it's known for a pleasant downtown, active<br />farmer's market, and nearby recreational opportunities. All of Moscow<br />is within biking or walking distance of the University of Idaho. For<br />more information about Moscow, see https://visitmoscowid.com/.</p>

<p>The University of Idaho has very strong faculty in evolution and<br />genomics in multiple departments and interdisciplinary programs. Of<br />particular note are the Bioinformatics and Computational Biology<br />Program (BCB: https://www.uidaho.edu/sci/bcb/people/faculty) and<br />the Institute for Bioinformatics and Evolutionary Studies (IBEST:<br />https://www.ibest.uidaho.edu/index.php). In addition, the University of<br />Idaho is only eight miles from Washington State University in Pullman, and<br />faculty from the two institutions interact and collaborate extensively.</p>

<p>Minimum qualifications include: a Ph.D. in biological sciences,<br />bioinformatics, or a related discipline; experience conducting research<br />in genomics or evolutionary biology, as evidenced by publications<br />in peer-reviewed journals; and evidence of strong written and oral<br />communication skills.  Experience analyzing next-generation sequence<br />data and familiarity with the genomics of marine fishes are desirable<br />but not required.</p>

<p>Apply at: https://uidaho.peopleadmin.com/postings/30003</p>

<p>Review of applications will begin January 15, 2021. The start date<br />is flexible.</p>

<p>The University of Idaho is an equal opportunity/Affirmative Action/equal<br />access employer.</p>

<p>Informal inquiries are encouraged and can be directed to Adam Jones<br />(adamjones@uidaho.edu).</p>

<p>"adamjones@uidaho.edu"</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17189/bioinformatics-svims-project-assistant-walk-in</guid>
  <pubDate>Sat, 20 Sep 2014 21:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SVIMS Project Assistant Walk IN]]></title>
  <description><![CDATA[
<p>SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES<br />TIRUPATI, ANDHRA PRADESH, INDIA- 517 507<br />BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS</p>

<p>Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS Bioinformatics centre under the BTISnet Project entitled “Creation of Bioinformatics Infrastructure Facility for promotion of Biology teaching through Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement will be made purely on temporary basis for a period of one year and it can be terminated at any time without notice or without assigning any reason thereof by the Coordinator of the Project. The person engaged shall not be entitled for any claim implicit or explicit for absorption in the University.</p>

<p>1. Name of the post : Project Assistant</p>

<p>2. Qualification :<br />i) Essential : MSc Bioinformatics/MTech (Biotechnology/Bioinformatics)</p>

<p>ii) Desirable : Experience in Bioinformatics research work (Preference will be given to candidates  qualified in BINC/UGC/CSIR/NET/GATE)</p>

<p>3. Remuneration : 16000 + 10% HRA for NET/GATE candidates 14000 + 10% HRA for M. Tech / M.Sc. Candidates</p>

<p>4. Place of posting : Tirupati</p>

<p>5. Duration of the Project : One year</p>

<p>Terms and conditions:</p>

<p>1. Candidates are required to submit the Biodata relevant certificates in support of their age and educational qualification etc., before the interview committee, SVIMS University, Tirupati.</p>

<p>2. Candidates called for interview will attend the interview at their own cost.<br />3. Interim enquiries will not be entertained.<br />4. The maximum age limit for Project Assistant is 28 years for general category and 33 years for SC and ST category candidates as on 25th September, 2014.</p>

<p>Advertisement:</p>

<p>http://svr98.ehostpros.com/~svimsb98/Project%20Assistant_notification.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/44395/genomics-india-conference-2024</guid>
  <pubDate>Fri, 27 Oct 2023 05:48:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[Genomics India Conference 2024 !]]></title>
  <description><![CDATA[
<p>Genomics India Conference is back and this time we are coming to Shiv<br />Nadar Intitution of Eminenece, Delhi NCR. GIC 2024 will be held from 1st<br />to 3rd of February 2024 and we are happy to send you an early invitation<br />for India's premier genomics conference.</p>

<p>GIC2024 focuses on "Advances In Genomics From AI-ML To Targeted<br />Therapies". GIC2024 encourages researchers to present original<br />contributions for poster presentations.</p>

<p>Note: Early bird registration closes on 1st December 2023.</p>

<p>Kindly, register at GIC 2024 Earlybird registartion</p>

<p>https://genomicsindia.co.in/</p>
]]></description>
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