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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29679?offset=880</link>
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	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19248/bioinformatics-jrfrasrf-position-at-institute-of-cytology-and-preventive-oncology-icpo</guid>
  <pubDate>Wed, 19 Nov 2014 20:16:32 -0600</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/RA/SRF position at Institute of Cytology and Preventive Oncology (ICPO)]]></title>
  <description><![CDATA[
<p>Institute of Cytology and Preventive Oncology (ICPO) I-7, Sector-39, Noida-201301</p>

<p>Candidates having the below mentioned qualifications may appear for walk in interview at ICPO on 2nd December 2014 between 10.00 AM and 12:00 PM under the below time bound projects under Dr. Subhash M. Agarwal, Scientist C. The post is purely temporary and co-terminus with the project.</p>

<p>Research Assistant (One)<br />25650/- consolidated<br />Discovery of EGFR secondary mutant inhibitors using structure based screening approach (ICMR)<br />Duration: 7 months</p>

<p>Essential: M.Sc./ M.Tech in Bioinformatics or any other related subject with good academic record.</p>

<p>Desirable: Experience in scripting and molecular docking.<br />	<br />Below 30 years</p>

<p>Junior Research Fellow (One)</p>

<p>16,000 + 30% HRA = Rs. 20800/-</p>

<p>Identification of novel inhibitors targeting EGFR using an integrated ligand and structure based approach (DBT)</p>

<p>Duration: 9 months</p>

<p>Essential: M.Sc./ M.Tech in Bioinformatics or any other related subject with good academic record. Candidates with CSIR-UGC / ICMR, NET qualification will be preferred</p>

<p>Desirable: Experience in scripting, QSAR and molecular docking.<br />	<br />Below 28 years</p>

<p>Interested eligible candidates may send their applications with Bio-data by email at (smagarwal@gmail.com) or by post addressed to Dr. Subhash M Agarwal, Scientist C, Institute of Cytology and Preventive Oncology (ICPO) I-7, Sector-39, Noida-201301 so as to reach latest by 1st December, 2014. The candidates may appear for interview at ICPO along with 3 copies of CV, photo and relevant certificates of qualifications in original and reprints of publications at the time of interview. It should be noted that No TA/DA will be paid for the walk in Interview.</p>

<p>Advertisement: www.icpo.org.in/advt-walk-in-interview.docx</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34594/synima-synteny-imaging-tool</guid>
	<pubDate>Sun, 10 Dec 2017 17:03:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34594/synima-synteny-imaging-tool</link>
	<title><![CDATA[Synima: Synteny Imaging tool]]></title>
	<description><![CDATA[<p><span>Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for their use. Synima has a range of graphical parameters including size, colours, order, and labels, which are specified in a config file generated by the first run of Synima &ndash; and can be subsequently edited. Synima runs quickly on a command line to generate informative and publication quality figures. Synima is open source and freely available from&nbsp;</span><span><a href="https://github.com/rhysf/Synima"><span>https://github.com/rhysf/Synima</span></a></span><span>&nbsp;under the MIT License.</span></p><p>Address of the bookmark: <a href="https://github.com/rhysf/Synima" rel="nofollow">https://github.com/rhysf/Synima</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19556/genome-origami</guid>
	<pubDate>Fri, 12 Dec 2014 22:48:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19556/genome-origami</link>
	<title><![CDATA[Genome Origami]]></title>
	<description><![CDATA[<p>There are several interesting factoid about our genomes, one of them is their folding. If we stretched out the DNA in a single cell, which is only a few millionths of an inch wide, it would span more than six feet. In other word, the size of six feet DNA fold themself to fit in a few millionths of an inch wide space. These DNA folding is a dynamic process that changes over time (!!). Researchers around the world have been trying to understand how DNA folds itself up so efficiently, and a recent post on the NIH Director&rsquo;s Blog highlights new research illustrating how the human genome folds inside the cell&rsquo;s nucleus, as well as how DNA folding affects gene regulation. The research team created this delightful video that demonstrates the principles involved using origami art.</p><p>http://bioinformaticsonline.com/videolist/watch/19555/a-3d-map-of-the-human-genome<br /><br />Researchers have been working to determine how cells regulate gene expression for nearly as long as we&rsquo;ve known about DNA. How, for example, do nerve cells know to turn off only nerve cell genes and turn off bone cell genes? DNA folding loops are part of the answer. This research team, which published their findings in a paper in Cell http://www.cell.com/cell/abstract/S0092-8674%2814%2901497-4 , found that the number of loops is much lower than expected. There are only 10,000 loops instead of the predicted millions, and they form on/off switches in DNA.<br /><br /></p><p>More at http://www.eurekalert.org/pub_releases/2014-12/ru-3mr121114.php</p><p>Reference http://www.cell.com/cell/abstract/S0092-8674%2814%2901497-4</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41736/synvisio-an-interactive-multiscale-synteny-visualization-tool-for-mcscanx</guid>
	<pubDate>Sun, 31 May 2020 02:01:14 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41736/synvisio-an-interactive-multiscale-synteny-visualization-tool-for-mcscanx</link>
	<title><![CDATA[SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.]]></title>
	<description><![CDATA[<p>SynVisio lets you explore the results of&nbsp;<a href="http://chibba.pgml.uga.edu/mcscan2/">McScanX</a>&nbsp;a popular synteny and collinearity detection toolkit and generate publication ready images.</p>
<p>SynVisio requires two files to run:</p>
<ul>
<li>The&nbsp;<strong>simplified gff file</strong>&nbsp;that was used as an input for a McScanX query.</li>
<li>The&nbsp;<strong>collinearity file</strong>&nbsp;generated as an output by McScanX for the same input query.</li>
<li>Optional&nbsp;<strong>track file</strong>&nbsp;in bedgraph format to annotate the generated charts.</li>
</ul>
<p>SynVisio offers different types of visualizations such as&nbsp;<strong>Linear Parallel plots</strong>,&nbsp;<strong>Hive plots</strong>,&nbsp;<strong>Stacked Parallel Plots&nbsp;</strong>and&nbsp;<strong>Dot plots</strong>. Users can configure the type of plots required and then choose the source and the target chromosomes that need to be mapped. Users also have option to download the generated visualizations in publication ready SVG or PNG formats.</p><p>Address of the bookmark: <a href="https://synvisio.github.io/#/" rel="nofollow">https://synvisio.github.io/#/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19545/walk-%E2%80%93-in-%E2%80%93-interview-agricultural-knowledge-management-unit-indian-agricultural-research-institute-new-delhi-110012</guid>
  <pubDate>Fri, 12 Dec 2014 21:33:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[WALK – IN – INTERVIEW @ Agricultural Knowledge Management Unit Indian Agricultural Research Institute, New Delhi-110012]]></title>
  <description><![CDATA[
<p>Walk-in-interview for the following temporary positions will be conducted on 20th December 2014 (between 10:00 AM to 01:00 PM) at Agricultural Knowledge Management Unit, A0 block (Ground Floor), LBS Building, Indian Agricultural Research Institute, New Delhi-110012:</p>

<p>1 Dr. A.K.Mishra Coordinator &amp; PI (BTISnet)</p>

<p>Traineeship (two) for one year</p>

<p>Rs. 5000/- (consolidated)</p>

<p>M.Sc. (Bioinformatics) with 60 % marks from a recognized University</p>

<p>20-12-2014 (10:00 AM -11:00 AM)</p>

<p>Studentship (four) for one year</p>

<p>Rs. 2500/- (consolidated)</p>

<p>Final year M.Sc./ M.Tech (Bioinformatics) Students from a recognized University</p>

<p>20-12-2014 (11:00 AM- 1:00 PM)</p>

<p>The positions are purely temporary and co-terminus with the DBT Programme. Eligible candidates are requested to submit the application form in the prescribed format along with original certificates/ documents (Degree, Marks sheets, Work experience, if any) at the time of interview. No TA/DA will be paid. Maximum age limit is 28 years for all positions. Age relaxation of 5 yrs for SC/ST and woman candidates and 3 years for OBC candidates will be given. Canvassing in any form invites disqualification.</p>

<p>Advertisement: http://www.iari.res.in/files/BIC-08122014-20141208-172344.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41125/chromonomer-a-tool-set-for-repairing-and-enhancing-assembled-genomes-through-integration-of-genetic-maps-and-conserved-synteny</guid>
	<pubDate>Mon, 17 Feb 2020 05:38:46 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41125/chromonomer-a-tool-set-for-repairing-and-enhancing-assembled-genomes-through-integration-of-genetic-maps-and-conserved-synteny</link>
	<title><![CDATA[Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny]]></title>
	<description><![CDATA[<p>Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic map, when considered against their local assembly order; and to identify scaffolds that have been incorrectly assembled according to the genetic map, and split those scaffolds.</p><p>Address of the bookmark: <a href="http://catchenlab.life.illinois.edu/chromonomer/" rel="nofollow">http://catchenlab.life.illinois.edu/chromonomer/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43888/syri-compares-alignments-between-two-chromosome-level-assemblies-and-identifies-synteny-and-structural-rearrangements</guid>
	<pubDate>Wed, 01 Jun 2022 02:01:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43888/syri-compares-alignments-between-two-chromosome-level-assemblies-and-identifies-synteny-and-structural-rearrangements</link>
	<title><![CDATA[Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.]]></title>
	<description><![CDATA[<p><span>Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.</span></p>
<p><span><img src="https://github.com/schneebergerlab/syri/raw/master/example/ampril_col0_chr3_6600000_10000000.png" alt="image" style="border: 0px;"></span></p><p>Address of the bookmark: <a href="https://github.com/schneebergerlab/syri" rel="nofollow">https://github.com/schneebergerlab/syri</a></p>]]></description>
	<dc:creator>Shruti Paniwala</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19600/studentship-at-nagaland-university</guid>
  <pubDate>Tue, 16 Dec 2014 01:35:00 -0600</pubDate>
  <link></link>
  <title><![CDATA[Studentship at Nagaland University]]></title>
  <description><![CDATA[
<p>Nagaland University<br />(A Central University Estd. By the Act of Parliament No. 35 of 1989)<br />Lumami 798 627, Nagaland<br />DBT Sponsored ‘Bioinformatics Infrastructure Facility’ Centre</p>

<p>Applications in plain paper are invited for the posts of (1) Traineeship (2 Nos.) and (2) Studentship – (2 Nos.) in the DBT funded-Bioinformatics Infrastructure Facility (BIF), Nagaland University, Lumami-798627, Nagaland. Details are given below. Interested candidates may submit the application along with self attested copies of certificates in support of the candidature to Prof. Chitta Ranjan Deb, Coordinator or Dr. L. N. Kakati, Deputy Coordinator, BIF Centre, Nagaland University, Lumami-798627, Nagaland on or before 15th January 2015.</p>

<p>The scanned application with relevant documents may be sent by email attachment to bifnulumami@gmail.com. Shortlisted candidates will be informed by email if called for interview. No TA/DA is admissible for attending the interview.</p>

<p>Traineeship (Two nos.)</p>

<p>    Post Graduate degree in any branch of Life Sciences from UGC recognized Universities</p>

<p>    Knowledge of computers and bioinformatics</p>

<p>    Rs.8000/- p.m. fixed.</p>

<p>    6 months</p>

<p>Studentship (Two nos.)</p>

<p>    Pursuing Post Graduate degree in any branch of Life Sciences from UGC recognized Universities</p>

<p>    Knowledge of computers and bioinformatics</p>

<p>    Rs.8000/- p.m. fixed.</p>

<p>    6 months</p>

<p>Terms and Conditions:</p>

<p>i) Applicants need to produce all original documents if call for interview.<br />ii) The posts are purely temporary and the appointment does not confer any entitlement or right over the job and will not be considered as formal service.<br />iii) No TA &amp; DA will be paid for appearing in the walk-in-interview.<br />iv) The stipend/salary amount is subject to the sanction of DBT, New Delhi.</p>

<p>Advertisement: http://www.nagauniv.org.in/files/BIF%20Advt.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/19729/senior-scientist-agricultural-bio-informatics-one-post</guid>
  <pubDate>Wed, 24 Dec 2014 05:01:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[Senior Scientist (Agricultural Bio-informatics) (One post)]]></title>
  <description><![CDATA[
<p>Agricultural Scientists Recruitment Board</p>

<p>Qualifications Essential:<br />Doctoral degree in Bio-informatics/ Biotechnology/Molecular Biology and Biotechnology/Life Sciences/ Computer Sciences with specialization in Bio-informatics including relevant basic sciences with 8 years’ experience in the relevant subject as Scientist/Lecturer or in an equivalent position in the Pay Band- 3 of 15600-39100 with Grade Pay of 5400/6000/7000/8000 having made contribution to research/teachin/extension education as evidenced by published work/innovations and impact. </p>

<p>OR </p>

<p>Doctoral degree in the above subject(s) including relevant basic sciences with minimum 8 years’ experience of high quality post-doctoral research in an institution/organization as evidenced by at least 6 publications in journals with NAAS rating of 7.5 or above.</p>

<p>Desirable:<br />(i) Specialization and experience: Knowledge of software development and its application in crop bioinformatics, experience in handling ‘omies’data. <br />(ii) Teaching experience in relevant subject</p>

<p>The Secretary, Agricultural Scientists Recruitment Board, Indian Council of Agricultural Research Krishi Anusandhan Bhavan-I, Pusa New Delhi –110 012, India</p>

<p>Detailed eligibility criteria with how to apply information can be had at:<br />http://www.indiastudychannel.com/jobs/333467-Indian-Council-of-Agricultural-Research-looking-for-Assistant-Director-General.aspx</p>

<p>More at http://asrb.org.in/administrator/uploads_dir/1418978057english.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19820/rstudio</guid>
	<pubDate>Sat, 27 Dec 2014 06:50:58 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19820/rstudio</link>
	<title><![CDATA[RStudio]]></title>
	<description><![CDATA[<p>RStudio IDE is a powerful and productive user interface for R. It&rsquo;s free and open source, and works great on Windows, Mac, and Linux.</p>
<p>The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr, lubridate, and others.</p>
<p>More at http://www.rstudio.com/</p>
<p>http://www.rstudio.com/products/RStudio/</p><p>Address of the bookmark: <a href="http://www.rstudio.com/" rel="nofollow">http://www.rstudio.com/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

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