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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29912?offset=1240</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25095/jrf-bioinformatics</guid>
  <pubDate>Mon, 02 Nov 2015 03:24:50 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics]]></title>
  <description><![CDATA[
<p>JRF Bioinformatics</p>

<p>Eligibility : ME/M.Tech, MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech, Microbiology), BE/B.Tech</p>

<p>Location : Gandhinagar</p>

<p>Last Date : 05 Nov 2015</p>

<p>Hiring Process : Face to Face Interview</p>

<p>Junior Research Fellow (JRF) Job vacancies in Gujarat State Biotechnology Mission (GSBTM)</p>

<p>Project : “Establishing a network in computational and system biology”</p>

<p>No. of Post : 01</p>

<p>Qualification : MSc. /M.Tech. /B.E. /B.Tech. in Biotechnology/Bioinformatics /Life Sciences /Microbiology /Biochemistry /Genetics from recognized University. Preference would be given to the candidates having NET/GATE.</p>

<p>Fellowship : Rs. 12,000 + 20% HRA<br />How to apply</p>

<p>Applications should be filled Online. The last date for submission of application is 5th November, 2015.</p>

<p>More at http://btm.gujarat.gov.in/btm/recruitment2.htm</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37759/pandaseq-is-a-program-to-align-illumina-reads-optionally-with-pcr-primers-embedded-in-the-sequence-and-reconstruct-an-overlapping-sequence</guid>
	<pubDate>Fri, 21 Sep 2018 10:19:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37759/pandaseq-is-a-program-to-align-illumina-reads-optionally-with-pcr-primers-embedded-in-the-sequence-and-reconstruct-an-overlapping-sequence</link>
	<title><![CDATA[PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.]]></title>
	<description><![CDATA[<p>Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via:</p>
<pre><code>sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config
</code></pre>
<p>On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must be installed, then:</p>
<pre><code>sudo fink install bzip2-dev pkgconfig</code></pre><p>Address of the bookmark: <a href="https://github.com/neufeld/pandaseq" rel="nofollow">https://github.com/neufeld/pandaseq</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25149/project-assistant-ii-job-vacancies-in-national-institute-of-oceanography-nio-goa</guid>
  <pubDate>Fri, 06 Nov 2015 01:33:22 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant-II job vacancies in National Institute of Oceanography (NIO Goa)]]></title>
  <description><![CDATA[
<p>Vacancy no : GAP0423/1509-15</p>

<p>Project Assistant-II job vacancies in National Institute of Oceanography (NIO Goa)</p>

<p>Project Title and Code : Biotechnology Information System. -- GAP0423</p>

<p>Qualification : M.Sc Bioinformatics / Zoology / Botany / Environmental Science. Desirable : Basic understanding of biodiversity concept is desirable</p>

<p>No. of Post : 01</p>

<p>Age : 28 Years</p>

<p>Place of Posting : Goa</p>

<p>Consolidated Stipend Per Month : Rs.16000/-</p>

<p>Job Requirement : Collection and handling of biodiversity data as assigned by the scientists and working with in-house biodiversity data management applications and software<br />How to apply</p>

<p>Candidates satisfying requirements may attend the Walk-in-interview on 12.11.2015, 10.00 AM at NIO Dona Paula, Goa-403004 along with their bio-data, attested copies of certificates &amp; mark lists in proof of qualification (SSC onwards), age, experience and testimonials. Candidates should bring a photo identity proof at the time of registration</p>

<p>More at http://www.nio.org/index/option/com_vacgoa/task/show/title/Goa/tid/6/sid/28/thid/64</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38892/wtdbg2-a-fuzzy-bruijn-graph-approach-to-long-noisy-reads-assembly</guid>
	<pubDate>Mon, 04 Feb 2019 04:53:47 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38892/wtdbg2-a-fuzzy-bruijn-graph-approach-to-long-noisy-reads-assembly</link>
	<title><![CDATA[wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly]]></title>
	<description><![CDATA[<p><span>Wtdbg2 is a&nbsp;</span><em>de novo</em><span>&nbsp;sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output.&nbsp;</span></p>
<pre>./wtdbg2 -x rs -g 4.6m -t 16 -i reads.fa.gz -fo prefix
./wtpoa-cns -t 16 -i prefix.ctg.lay.gz -fo prefix.ctg.fa</pre><p>Address of the bookmark: <a href="https://github.com/ruanjue/wtdbg2" rel="nofollow">https://github.com/ruanjue/wtdbg2</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40701/fastgt-an-alignment-free-method-for-calling-common-snvs-directly-from-raw-sequencing-reads</guid>
	<pubDate>Tue, 28 Jan 2020 03:27:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40701/fastgt-an-alignment-free-method-for-calling-common-snvs-directly-from-raw-sequencing-reads</link>
	<title><![CDATA[FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads]]></title>
	<description><![CDATA[<p>FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in sequencing data and predicts the genotype. All this takes less than 1 hour on average low-cost Linux server.</p>
<p><a href="http://bioinfo.ut.ee/FastGT/">http://bioinfo.ut.ee/FastGT/</a></p>
<p><strong><a href="https://github.com/bioinfo-ut/GenomeTester4/">https://github.com/bioinfo-ut/GenomeTester4/</a></strong></p><p>Address of the bookmark: <a href="http://bioinfo.ut.ee/FastGT/" rel="nofollow">http://bioinfo.ut.ee/FastGT/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25293/srfjrf-bioinformatics-at-national-bureau-of-animal-genetic-resources</guid>
  <pubDate>Thu, 26 Nov 2015 01:54:07 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF/JRF Bioinformatics at National Bureau of Animal Genetic Resources]]></title>
  <description><![CDATA[
<p>National Bureau of Animal Genetic Resources </p>

<p>SRF Job vacancies in National Bureau of Animal Genetic Resources (NBAGR) on contractual basis</p>

<p>No. of Posts : 03</p>

<p>Qualifications : Master degree in any one of discipline/ Subjects Biotechnology/Bioinformatics/Life Sciences/ Computer Applications with 4 years/5 years of Bachelor’s degree. Candidates having post graduate degree in above mentioned subjects with 3 years Bachelor’s degree should be NET qualified.</p>

<p>Note : i. The Ph.D. Degree holders are eligible for the posts. ii. The Master’s degree holders with the integrated degrees like B.Tech. &amp; M. Tech. (5 years) are eligible. iii. Graduates with three years Bachelor’s degree, who have acquired professional Master’s degree (3 years) like M.Sc. (Ag.), Masters in Computer Applications, M. Tech., etc., are eligible.</p>

<p>Desirable : The candidates should have zeal to work in R environment and NGS data analysis</p>

<p>Emolument : Rs. 28,000/- </p>

<p>Age Limit : 35 year for Men and 40 years for Women in case of SRF on the date of Interview.<br />How to apply</p>

<p>Walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132 001 at 10:30 AM on 02.12.2015. Interested candidates may attend Walk-in-Interview at 10:30 AM on 02.12.2015 alongwith original certificates and typed bio-data with one set of attested copies of each their certificates with passport size photograph.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41030/slr-superscaffolder-a-scaffold-assemble-pipeline-for-stlfr-reads</guid>
	<pubDate>Fri, 14 Feb 2020 14:23:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41030/slr-superscaffolder-a-scaffold-assemble-pipeline-for-stlfr-reads</link>
	<title><![CDATA[SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.]]></title>
	<description><![CDATA[<p>This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds.</p>
<p>Here is an illustration of this pipeline:</p>
<p>&nbsp;<img src="https://github.com/BGI-Qingdao/SLR-superscaffolder/raw/master/image.png" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://github.com/BGI-Qingdao/SLR-superscaffolder" rel="nofollow">https://github.com/BGI-Qingdao/SLR-superscaffolder</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25303/ciab-recruits-scientist-engineer-informatics-officer</guid>
  <pubDate>Sat, 28 Nov 2015 03:40:28 -0600</pubDate>
  <link></link>
  <title><![CDATA[CIAB Recruits Scientist, Engineer, Informatics Officer]]></title>
  <description><![CDATA[
<p>Center of Innovative and Applied Bioprocessing (CIAB) - Punjab</p>

<p>Center of Innovative and Applied Bioprocessing (CIAB) invites applications to recruit on vacant posts of Scientist, Associate Plant Manager/ Plant Engineer, Informatics Officer. Applications against these Government Jobs can be submitted on or before 7th January 2016.<br />CIAB Vacancy 2015 Details</p>

<p>9. Research &amp; Development – Informatics Officer<br />Qualification: M. Tech or M.E. in computer science or information technology or bioinformatics with 4 years of R&amp;D experience (after Master’s Degree) in an R&amp;D organization with work profile of large data assembly, analysis.<br />Age Limit: 45 years<br />How to Apply : Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Chief Exec</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42139/mixtures-a-novel-tool-for-bacterial-strain-reconstruction-from-reads</guid>
	<pubDate>Fri, 21 Aug 2020 08:23:19 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42139/mixtures-a-novel-tool-for-bacterial-strain-reconstruction-from-reads</link>
	<title><![CDATA[mixtureS: a novel tool for bacterial strain reconstruction from reads]]></title>
	<description><![CDATA[<div>
<p>mixtureS that can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated datasets and 195 experimental datasets, mixtureS reliably identified the strains, their numbers and their abundance. Compared with three tools, mixtureS showed better performance in almost all simulated datasets and the vast majority of experimental datasets.</p>
</div>
<div>
<div>Availability</div>
<p>The source code and tool mixtureS is available at&nbsp;<a href="http://www.cs.ucf.edu/~xiaoman/mixtureS/" target="_blank">http://www.cs.ucf.edu/&tilde;xiaoman/mixtureS/</a>.</p>
</div><p>Address of the bookmark: <a href="http://www.cs.ucf.edu/~xiaoman/mixtureS/" rel="nofollow">http://www.cs.ucf.edu/~xiaoman/mixtureS/</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/26827/kamaleshwar-singh-lab</guid>
  <pubDate>Fri, 25 Mar 2016 10:46:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Kamaleshwar Singh Lab]]></title>
  <description><![CDATA[
<p>The focus of Dr. Singh’s research and teaching is on the molecular mechanistic basis for environmental carcinogen-induced genetic (DNA damage) and epigenetic changes, and susceptibility to human cancer development</p>

<p>More at http://www.tiehh.ttu.edu/dr.-kamaleshwar-singh.html</p>
]]></description>
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