<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29912?offset=1340</link>
	<atom:link href="https://bioinformaticsonline.com/related/29912?offset=1340" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25249/research-associatesresearch-fellow-school-of-agricultural-biotechnology-last-date-17-11-2015-and-interview-on-26-11-2015-at-1100-am</guid>
  <pubDate>Fri, 13 Nov 2015 02:46:59 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research Associates/Research Fellow - School of Agricultural Biotechnology (Last Date 17-11-2015 and Interview on 26-11-2015 at 11.00 AM)]]></title>
  <description><![CDATA[
<p>PAU Recruitment November 2015, Punjab</p>

<p>Job notification in Punjab Agricultural University (PAU) for research Associate/ Research Fellow posts for different projects. Eligible candidates may apply in prescribed application format on or before 17-11-2015 from 09:00 am to 05:00 pm.</p>

<p>Vacancies:<br />Research Associate/ Research Fellow-03<br />Qualification:<br />Candidates should possess B.Sc. with minimum 50% marks, M.Sc. in Bioinformatics/ Biotechnology/ Genetics/ Plant Breeding/ Plant Breeding &amp; Genetics/ Plant Breeding, Genetics &amp; Biotechnology/ Microbiology/ Biochemistry/ Botany with 65% marks.<br />Selection Process:<br />Selection will be based on interview.<br />How to Apply:<br />Eligible candidates may send their applications along with attested copies of certificates, fee to the Director, School of Agricultural Biotechnology, PAU, Ludhiana on or before 17-11-2015 from 09:00 am to 05:00 pm<br />Last Date:<br />17-11-2015 </p>

<p>More at http://web.pau.edu/content/banner/1349.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37574/simlord-a-read-simulator-for-third-generation-sequencing-reads</guid>
	<pubDate>Wed, 22 Aug 2018 10:40:27 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37574/simlord-a-read-simulator-for-third-generation-sequencing-reads</link>
	<title><![CDATA[SimLoRD: A read simulator for third generation sequencing reads]]></title>
	<description><![CDATA[<p>SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model.</p>
<p>Reads are simulated from both strands of a provided or randomly generated reference sequence.</p>
<div id="rst-header-features">
<ul>
<li>The reference can be read from a FASTA file or randomly generated with a given GC content. It can consist of several chromosomes, whose structure is respected when drawing reads. (Simulation of genome rearrangements may be incorporated at a later stage.)</li>
<li>The read lengths can be determined in four ways: drawing from a log-normal distribution (typical for genomic DNA), sampling from an existing FASTQ file (typical for RNA), sampling from a a text file with integers (RNA), or using a fixed length</li>
<li>Quality values and number of passes depend on fragment length.</li>
<li>Provided subread error probabilities are modified according to number of passes</li>
<li>Outputs reads in FASTQ format and alignments in SAM format</li>
</ul>
</div><p>Address of the bookmark: <a href="https://bitbucket.org/genomeinformatics/simlord/" rel="nofollow">https://bitbucket.org/genomeinformatics/simlord/</a></p>]]></description>
	<dc:creator>Aaryan Lokwani</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25095/jrf-bioinformatics</guid>
  <pubDate>Mon, 02 Nov 2015 03:24:50 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics]]></title>
  <description><![CDATA[
<p>JRF Bioinformatics</p>

<p>Eligibility : ME/M.Tech, MSc(Bio-Chemistry, Bio-Informatics, Bio-Tech, Microbiology), BE/B.Tech</p>

<p>Location : Gandhinagar</p>

<p>Last Date : 05 Nov 2015</p>

<p>Hiring Process : Face to Face Interview</p>

<p>Junior Research Fellow (JRF) Job vacancies in Gujarat State Biotechnology Mission (GSBTM)</p>

<p>Project : “Establishing a network in computational and system biology”</p>

<p>No. of Post : 01</p>

<p>Qualification : MSc. /M.Tech. /B.E. /B.Tech. in Biotechnology/Bioinformatics /Life Sciences /Microbiology /Biochemistry /Genetics from recognized University. Preference would be given to the candidates having NET/GATE.</p>

<p>Fellowship : Rs. 12,000 + 20% HRA<br />How to apply</p>

<p>Applications should be filled Online. The last date for submission of application is 5th November, 2015.</p>

<p>More at http://btm.gujarat.gov.in/btm/recruitment2.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37759/pandaseq-is-a-program-to-align-illumina-reads-optionally-with-pcr-primers-embedded-in-the-sequence-and-reconstruct-an-overlapping-sequence</guid>
	<pubDate>Fri, 21 Sep 2018 10:19:52 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37759/pandaseq-is-a-program-to-align-illumina-reads-optionally-with-pcr-primers-embedded-in-the-sequence-and-reconstruct-an-overlapping-sequence</link>
	<title><![CDATA[PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.]]></title>
	<description><![CDATA[<p>Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via:</p>
<pre><code>sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config
</code></pre>
<p>On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must be installed, then:</p>
<pre><code>sudo fink install bzip2-dev pkgconfig</code></pre><p>Address of the bookmark: <a href="https://github.com/neufeld/pandaseq" rel="nofollow">https://github.com/neufeld/pandaseq</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25149/project-assistant-ii-job-vacancies-in-national-institute-of-oceanography-nio-goa</guid>
  <pubDate>Fri, 06 Nov 2015 01:33:22 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant-II job vacancies in National Institute of Oceanography (NIO Goa)]]></title>
  <description><![CDATA[
<p>Vacancy no : GAP0423/1509-15</p>

<p>Project Assistant-II job vacancies in National Institute of Oceanography (NIO Goa)</p>

<p>Project Title and Code : Biotechnology Information System. -- GAP0423</p>

<p>Qualification : M.Sc Bioinformatics / Zoology / Botany / Environmental Science. Desirable : Basic understanding of biodiversity concept is desirable</p>

<p>No. of Post : 01</p>

<p>Age : 28 Years</p>

<p>Place of Posting : Goa</p>

<p>Consolidated Stipend Per Month : Rs.16000/-</p>

<p>Job Requirement : Collection and handling of biodiversity data as assigned by the scientists and working with in-house biodiversity data management applications and software<br />How to apply</p>

<p>Candidates satisfying requirements may attend the Walk-in-interview on 12.11.2015, 10.00 AM at NIO Dona Paula, Goa-403004 along with their bio-data, attested copies of certificates &amp; mark lists in proof of qualification (SSC onwards), age, experience and testimonials. Candidates should bring a photo identity proof at the time of registration</p>

<p>More at http://www.nio.org/index/option/com_vacgoa/task/show/title/Goa/tid/6/sid/28/thid/64</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38892/wtdbg2-a-fuzzy-bruijn-graph-approach-to-long-noisy-reads-assembly</guid>
	<pubDate>Mon, 04 Feb 2019 04:53:47 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38892/wtdbg2-a-fuzzy-bruijn-graph-approach-to-long-noisy-reads-assembly</link>
	<title><![CDATA[wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly]]></title>
	<description><![CDATA[<p><span>Wtdbg2 is a&nbsp;</span><em>de novo</em><span>&nbsp;sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output.&nbsp;</span></p>
<pre>./wtdbg2 -x rs -g 4.6m -t 16 -i reads.fa.gz -fo prefix
./wtpoa-cns -t 16 -i prefix.ctg.lay.gz -fo prefix.ctg.fa</pre><p>Address of the bookmark: <a href="https://github.com/ruanjue/wtdbg2" rel="nofollow">https://github.com/ruanjue/wtdbg2</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40701/fastgt-an-alignment-free-method-for-calling-common-snvs-directly-from-raw-sequencing-reads</guid>
	<pubDate>Tue, 28 Jan 2020 03:27:33 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40701/fastgt-an-alignment-free-method-for-calling-common-snvs-directly-from-raw-sequencing-reads</link>
	<title><![CDATA[FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads]]></title>
	<description><![CDATA[<p>FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the frequency of k-mers in sequencing data and predicts the genotype. All this takes less than 1 hour on average low-cost Linux server.</p>
<p><a href="http://bioinfo.ut.ee/FastGT/">http://bioinfo.ut.ee/FastGT/</a></p>
<p><strong><a href="https://github.com/bioinfo-ut/GenomeTester4/">https://github.com/bioinfo-ut/GenomeTester4/</a></strong></p><p>Address of the bookmark: <a href="http://bioinfo.ut.ee/FastGT/" rel="nofollow">http://bioinfo.ut.ee/FastGT/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25293/srfjrf-bioinformatics-at-national-bureau-of-animal-genetic-resources</guid>
  <pubDate>Thu, 26 Nov 2015 01:54:07 -0600</pubDate>
  <link></link>
  <title><![CDATA[SRF/JRF Bioinformatics at National Bureau of Animal Genetic Resources]]></title>
  <description><![CDATA[
<p>National Bureau of Animal Genetic Resources </p>

<p>SRF Job vacancies in National Bureau of Animal Genetic Resources (NBAGR) on contractual basis</p>

<p>No. of Posts : 03</p>

<p>Qualifications : Master degree in any one of discipline/ Subjects Biotechnology/Bioinformatics/Life Sciences/ Computer Applications with 4 years/5 years of Bachelor’s degree. Candidates having post graduate degree in above mentioned subjects with 3 years Bachelor’s degree should be NET qualified.</p>

<p>Note : i. The Ph.D. Degree holders are eligible for the posts. ii. The Master’s degree holders with the integrated degrees like B.Tech. &amp; M. Tech. (5 years) are eligible. iii. Graduates with three years Bachelor’s degree, who have acquired professional Master’s degree (3 years) like M.Sc. (Ag.), Masters in Computer Applications, M. Tech., etc., are eligible.</p>

<p>Desirable : The candidates should have zeal to work in R environment and NGS data analysis</p>

<p>Emolument : Rs. 28,000/- </p>

<p>Age Limit : 35 year for Men and 40 years for Women in case of SRF on the date of Interview.<br />How to apply</p>

<p>Walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132 001 at 10:30 AM on 02.12.2015. Interested candidates may attend Walk-in-Interview at 10:30 AM on 02.12.2015 alongwith original certificates and typed bio-data with one set of attested copies of each their certificates with passport size photograph.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41030/slr-superscaffolder-a-scaffold-assemble-pipeline-for-stlfr-reads</guid>
	<pubDate>Fri, 14 Feb 2020 14:23:30 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41030/slr-superscaffolder-a-scaffold-assemble-pipeline-for-stlfr-reads</link>
	<title><![CDATA[SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.]]></title>
	<description><![CDATA[<p>This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds.</p>
<p>Here is an illustration of this pipeline:</p>
<p>&nbsp;<img src="https://github.com/BGI-Qingdao/SLR-superscaffolder/raw/master/image.png" alt="image" style="border: 0px;"></p><p>Address of the bookmark: <a href="https://github.com/BGI-Qingdao/SLR-superscaffolder" rel="nofollow">https://github.com/BGI-Qingdao/SLR-superscaffolder</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25303/ciab-recruits-scientist-engineer-informatics-officer</guid>
  <pubDate>Sat, 28 Nov 2015 03:40:28 -0600</pubDate>
  <link></link>
  <title><![CDATA[CIAB Recruits Scientist, Engineer, Informatics Officer]]></title>
  <description><![CDATA[
<p>Center of Innovative and Applied Bioprocessing (CIAB) - Punjab</p>

<p>Center of Innovative and Applied Bioprocessing (CIAB) invites applications to recruit on vacant posts of Scientist, Associate Plant Manager/ Plant Engineer, Informatics Officer. Applications against these Government Jobs can be submitted on or before 7th January 2016.<br />CIAB Vacancy 2015 Details</p>

<p>9. Research &amp; Development – Informatics Officer<br />Qualification: M. Tech or M.E. in computer science or information technology or bioinformatics with 4 years of R&amp;D experience (after Master’s Degree) in an R&amp;D organization with work profile of large data assembly, analysis.<br />Age Limit: 45 years<br />How to Apply : Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Chief Exec</p>
]]></description>
</item>

</channel>
</rss>