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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29912?offset=1560</link>
	<atom:link href="https://bioinformaticsonline.com/related/29912?offset=1560" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/38815/research-opening-ibab-bengaluru</guid>
  <pubDate>Mon, 28 Jan 2019 17:45:54 -0600</pubDate>
  <link></link>
  <title><![CDATA[Research opening @ IBAB, Bengaluru]]></title>
  <description><![CDATA[
<p>Applications are invited for the position of Project Assistant in Bio-IT centre at IBAB, Electronic city, Bengaluru. The successful candidate will work in the next-generation sequencing (NGS) facility to perform nucleic acid isolations, quality and quantity analyses, NGS library preparations, and maintenance of sequencing related instruments and other related lab equipment. In addition, the candidate is expected to assist in various administrative matters including procurement, maintaining inventory of laboratory consumables etc. The person will have opportunity to get expertise in entire pipeline of NGS. After sufficient training, the person will act as a demonstrator in the workshops conducted by Bio-IT centre.<br />Essential Qualifications, Experiences, and Skills:</p>

<p>1. MSc. or B. Tech. or equivalent degree in Biotechnology or related life sciences discipline.<br />2. Strong aptitude for laboratory work and should be detail-oriented person.<br />3. Hands-on experience in basic molecular biology techniques.<br />4. Prior experience in working in a research laboratory or industry.<br />5. Basic IT skills that include familiarity with Microsoft Office packages.<br />6. Ability to carry out basic maintenance of general lab equipments and laboratory resources.<br />7. Ability to maintain accurate records of laboratory work.<br />8. Willingness to learn, and should be a team player.<br />Desirable Experience and Skills:<br />1. Familiarity with NGS technology.<br />2. Experience in preparation of NGS libraries.<br />3. Familiarity with Sanger sequencing technology (capillary electrophoresis based)</p>

<p>Remuneration: Remuneration will commensurate with expertise and experience.</p>

<p>How to Apply: Interested applicants fulfilling the criteria may send their detailed CV and a cover letter that explains their suitability for this position, in a single PDF, to Dr. Sreekanth Reddy at careers_bioit@ibab.ac.in. Last date for submission of application is 23rd February 2019. Please mention the position applying for in the subject line of the email.</p>

<p>About IBAB: The Bio-IT Centre at IBAB has state-of-art sequencing facility with the HiSeq 2500 and accessories such as Qubit, Covaris, Agilent 2200 TapeStation, Stratagene Mx 3000 for next generation sequencing, 3500 Dx Genetic Analyzer for capillary electrophoresis based sequencing, and HiScan for microarray imaging. The facility is fully operational and providing services to the scientific community. The Institute of Bioinformatics and Applied Biotechnology (IBAB) is a unique institute engaged in education, research and entrepreneur support programs and is based at Electronic City, Bangalore. IBAB’s mission is to catalyze the growth of the biotechnology and bioinformatics industries in India. To know more please visit: http://www.ibab.ac.in/index.php/bioit/</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23496/bioinformatics-scientist-at-nin</guid>
  <pubDate>Sat, 25 Jul 2015 22:07:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Scientist at NIN]]></title>
  <description><![CDATA[
<p>No.NIN/PERS/Sch-88/2015-16/</p>

<p>WALK-IN-INTERVIEW (EMPLOYMENT NOTIFICATION)</p>

<p>Eligible candidates are invited to apply for the following post on the ad hoc research project entitled “Biomedical Informatics Centre’s of ICMR” - funded by ICMR at this Institute. The Applications will be received from the individuals on 31st July, 2015 between 9:30 A.M. and 10:30 A.M. at Conference Hall, NIN, Tarnaka, Hyderabad.</p>

<p>Late applications will not be entertained after 10:30 A.M. at any circumstances.</p>

<p>The Candidates may download the Application Form from NIN website: www.ninindia.org</p>

<p>Selection Procedure: Written test and Interview will be conducted to the eligible candidates, if the large numbers of candidates are found to be eligible in the screening. If the lesser number of candidates are found to be eligible in the screening, interview will be conducted only to the short listed candidates for final selection. The names of the shortlisted candidates will be displayed on the Notice Board, which is kept in front of the Conference Hall by 11:30 A.M.</p>

<p>Date of Written Test / Interview: 31st July, 2015. The essential qualification, experience, consolidated Pay and service tenure are as under:</p>

<p>1. Scientist-II (no. of vacancies -1 No.) (UR)</p>

<p>Essential Qualifications :</p>

<p>(i) First Class Master’s Degree in Bio-informatics/ Life Sciences form a recognized University with 4 years R&amp;D experience in the biomedical informatics subject. (or)</p>

<p>(ii) 2nd Class M.Sc./ M.Tech. in Bio-informatics + Ph.D. in the relevant subject from recognized University with 4 years research experience in the biomedical informatics subject. </p>

<p>Age limit : Not exceeding 40 years. Cons.</p>

<p>Pay : Rs.45,954/- p.m. plus 30% HRA p.m. (fixed) without any other allowances.</p>

<p>Tenure : Initially upto 29th February, 2016 and extendable for three more years based on the performance of the candidate and funds position.</p>

<p>Note: Age relaxation will be given to the deserving Candidates. The short listed candidates should bring all original certificates of educational qualification (from SSC onwards), experience, SC/ST/OBC Community Certificate / PH Certificates along with a pass port size photograph and set of Photo copies duly attested for attending the Written Test/Interview. The persons belonging to Other Backward Category should bring the latest O.B.C. (Non-creamy layer) Certificate issued by the respective Tahsildar/ MRO specifically issued for the purpose of applying for Central Government Post. No TA/DA will be paid for attending the Written Test /Interview.</p>

<p>GENERAL CONDITIONS: The conditions of employment will be the same as are for the project staff on contract basis. The candidates have no right to claim for any regular employment at this Institute. The Director In-charge &amp; Appointing Authority has the right to accept / reject any application without assigning any reason/s and no correspondence in this matter will be entertained. </p>

<p>More at http://ninindia.org/31July2015.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42418/scientist-b-bioinformatics-at-aiims-delhi</guid>
  <pubDate>Sun, 20 Dec 2020 04:34:55 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist-B (Bioinformatics) at AIIMS, Delhi]]></title>
  <description><![CDATA[
<p>Name of the Project: “Artificial intelligence in Oncology, Harnessing big data and advanced computing to provide personalized diagnosis and treatment for Cancer patients”</p>

<p>Age Limit: 35</p>

<p>How to Apply for the AIIMS Life Science Job:</p>

<p>Interested applicants are asked to send out a detailed CV to Dr Ashok Sharma (aioncoaiims@gmail.com). Laboratory of Chromatin and also Cancer Epigenetics, Department of Biochemistry with the subject line “Application for Scientist-B position for MeitY project” latest by January 01st, 2021.<br />Complete Information of the year of passing, experience, marks, etc. ought to be mentioned in the CV Incomplete. applications will certainly be rejected Just shortlisted applicants will be called for interview. Chosen candidates will certainly be intimated by email/phone.<br />No TA/DA will certainly be paid for appearing in the interview.<br />Note, The institute reserved the right to fill up or not to fill up the post advertised.</p>

<p>Emoluments: Rs. 56,000/- plus 24 percent HRA</p>

<p>Eligibility:<br />2nd class Master’s Degree with a PhD in a pertinent subject (Bioinformatics) from.a recognized University<br />1st class Master’s degree in Life Sciences (Bioinformatics) from a recognized university OR.<br />Bachelor’s Degree in Engineering or-Technology with minimal 60% marks from a recognized University or equivalent.</p>

<p>Desirable Qualifications:<br />Experience in Bioinformatics/NGS data. Analysis/System Biology/Computer Science/ statistics with experience in Machine learning/Al project.<br />Experience of Deep learning applications in biological data ( image/text).<br />Proficient in Rf Python machine learning libraries.<br />Prior experience in the cancer-related project (ML-based) will be advantageous.<br />Experience with PyTorch/TensorFlow will certainly be very desirable.<br />Applicant should have strong scientific writing as well as. verbal abilities.<br />Papers in sci-indexed journals demonstrating ML skill sets.<br />Database handling will certainly be plus yet not required.</p>

<p>More detail at https://www.aiims.edu/images/pdf/recruitment/advertisement/biochem-16-12-20.pdf</p>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/23680/five-key-traits-to-seek-out-in-potential-bioinformatics-candidates</guid>
	<pubDate>Mon, 10 Aug 2015 12:53:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/23680/five-key-traits-to-seek-out-in-potential-bioinformatics-candidates</link>
	<title><![CDATA[Five key traits to seek out in potential bioinformatics candidates !!!]]></title>
	<description><![CDATA[<p>Genomics and proteomics data are being collected in bulk, but mostly, traditional biologist don&rsquo;t know what to do with it. Perhaps this is the reason why (not only this!!! ) computational biologist/bioinformatics scientists are hot commodities in the research world.</p><p>In fact, there are huge demands for expert biological data analyst. It&rsquo;s a fairly new &nbsp;(not exactly) hot area, these bioinformatician are invaluable because they know and understand the significance of biological data for your research and how you can use it for better understanding of biological problems.</p><p>The bioinformatics can discover biological patterns and stories in genomic and proteomics data. They can develop the pipeline needed to properly collect, store and analyse it.</p><p><img src="http://bioinformaticsonline.com/mod/photo/hire.gif" alt="image" style="border: 0px;"></p><p>Once your research group is ready to make a larger investment and hire a bioinformatician to gain a competitive edge, there are several key traits to seek out in potential candidates. The best bioinformatician are:</p><p>1. Highly Skilled - programming skills, experience with the biological software and tools.</p><p>The biological data won&rsquo;t illuminate much if the scientist analysing it doesn&rsquo;t possess practical programming skills, experience with the biological software and tools and a thorough understanding of basic biological stuff. A solid background in mathematics and statistics is also an indispensable trait.</p><p>2. Insight - Real vision, robust understanding and deep insight.</p><p>In order to hire the best bioinformatics and computational biologist scientist for your needs, it is always recommended and mostly practiced by the recruiters, to ask each contender to write and develop a sample script/presentation based on a specific set of data you provide. Then, explore the approaches used to deal with data provided and pick up those candidates who convey real vision, robust understanding and deep insight.</p><p>3. Energetic &ndash; Curiosity to explore</p><p>Mostly natural curiosity and enthusiasm for solving big biological problems coupled with an ability to transform data into a scientific stories may place one candidate above the rest. In addition to achieve that, the bioinformatician should be agile enough to quickly modify their methods to suit changes within a particular research.</p><p>4. Researcher &ndash; Publications</p><p>Look for someone who has a keen sense and understanding of concern biological problems. You can judge it by looking at previously published papers and data. It is always recommended to have a look at GitHub and other repository for codes written by her/him.</p><p>5. Impressive communicator - Insight that can&rsquo;t be expressed is worthless.</p><p>Good bioinformatics scientists are able to uncover biological patterns and are willing to explain those patterns in clear and helpful ways through thoughtful and open communication. In other words, they should must have good scientific writing skills. A computational biologis/bioinformatician&nbsp; should know how to present the data and tell a scientific story through numbers/images.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/41043/postdoctoral-scientist-genome-analytics-genome-bioinformatics-mf</guid>
  <pubDate>Sun, 16 Feb 2020 02:57:40 -0600</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral scientist genome analytics/ genome bioinformatics (m/f/*)]]></title>
  <description><![CDATA[
<p>https://www.uksh.de/jobs/Stellenangebote-nr-20190570-p-8.html<br />Your profile:<br />Degree in bioinformatics, biostatistics, or equivalent<br />Experience in the processing and analysis of large-scale genomics data using compute clusters / high-performance computing<br />Strong competence in working in Unix/Linux environments (shell)<br />Strong programming skills (in particular: Python, R, Perl)<br />Experience with using git and snakemake<br />Fluent English language skills, both spoken and written<br />Strong communication skills and motivation to work in a young, interdisciplinary, dynamic team</p>

<p>Additional Information:</p>

<p>If you have any questions about scientific aspects of this position, please contact Prof. Lars Bertram, head of LIGA (lars.bertram@uni-luebeck.de).</p>

<p>Please contact Ms. Anna Wolbert for further questions about administrative details (recruiting@uksh.de).</p>

<p>Weitere Informationen erhalten Sie auch unter www.uksh.de/karriere.</p>

<p>Wir freuen uns auf Ihre Bewerbung bis zum 15.03.2020 unter Angabe unserer Ausschreibungsnummer 20190570.119.CL.</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23912/jrf-in-bioinformatics-central-university-of-rajasthan</guid>
  <pubDate>Thu, 20 Aug 2015 05:28:21 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ Central University of Rajasthan]]></title>
  <description><![CDATA[
<p>Central University of Rajasthan<br />Department of Biotechnology<br />School of Life Sciences<br />Bandarsindri, Distt. Ajmer</p>

<p>Applications are invited for one JRF position supported by DST sponsored project in Bioinformatics with Dr. Tarun Kumar Bhatt.</p>

<p>Title of the project: Molecular Modeling of malaria parasite ‘secretome’: A potential drug target</p>

<p>Fellowship: Rs. 14000 consolidated</p>

<p>Duration of project: 36 months.</p>

<p>Essential Qualification: Master’s degree in Biotechnology/Bioinformatics with minimum 55% marks. Age limit as per government rule.</p>

<p>Candidates with good experience of molecular modeling, In-silico screening, MD simulation and database formation will be preferred. Good knowledge of Linux operating system is desirable.</p>

<p>How to apply: Interested candidate can send soft copy of application in format given below to tarun@curaj.ac.in on or before 29/08/2015.</p>

<p>1. Name<br />2. Fathers name<br />3. Date of Birth<br />5. Age<br />6. Sex<br />7. Address<br />8. Telephone / mobile no.<br />9. Email:<br />10. Academic qualifications starting from 10th class.<br />11. Summary of experience in molecular modeling, In-silico screening and database formation.</p>

<p>General Conditions:</p>

<p>1.Selected candidate would be informed for date and time of the interview via email .<br />2. No TA/DA will be paid for attending the interview.</p>

<p>More at http://www.curaj.ac.in/2015/Rec/aug/Advertisement%20for%20post%20of%20JRF%20under%20DST%20project%28BioTech%29.pdf</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43892/choosing-the-right-ngs-sequencing-instrument-for-your-study</guid>
	<pubDate>Wed, 15 Jun 2022 00:37:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43892/choosing-the-right-ngs-sequencing-instrument-for-your-study</link>
	<title><![CDATA[Choosing the Right NGS Sequencing Instrument for Your Study]]></title>
	<description><![CDATA[<p>The right sequencing instrument for your study depends on your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment. Below, we've described and compared metrics for each of the instruments available. If you&rsquo;re new to high-throughput sequencing and have questions about how you should design your sequencing run, fill out our&nbsp;<a href="https://genohub.com/ngs-consultation/"><span>free consultation form</span></a>&nbsp;and we'll get in touch with you to help.</p>
<p>More at&nbsp;https://genohub.com/ngs-instrument-guide/</p><p>Address of the bookmark: <a href="https://genohub.com/ngs-instrument-guide/" rel="nofollow">https://genohub.com/ngs-instrument-guide/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24074/bioinformatics-training-fellowship</guid>
  <pubDate>Fri, 28 Aug 2015 16:02:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Training Fellowship !!]]></title>
  <description><![CDATA[
<p>Applications are invited from suitable candidates for six months ‘Training Fellowship’ in Bioinformatics under the BTISNET program of DBT in the Distributed Information Sub center (DISC) facility at NIPGR, New Delhi, under the supervision of Dr. Gitanjali Yadav, Scientist, NIPGR.</p>

<p>Project Title 	No. of post(s) 	Designation 	Stipend in  	Tenure 	Start 	End<br />Establishment of Distributed Information Sub-Centre (DISC) 	02 	Trainee Fellow / Student Fellow 	5,000/- p.m 	Six months 	01/01/2016 	30/06/2016</p>

<p>Essential Qualification: </p>

<p>Traineeship: Candidate having B.Tech or Master Degree or equivalent in Bioinformatics/ Biotechnology with strong interest in Computational Biology and First class/ division throughout academic career may apply. </p>

<p>Studentship: Students currently pursuing the final year of B.Tech or Masters Degree or equivalent in Bioinformatics/ Biotechnology, requiring a thesis as a necessary pre-requisite for completion of respective degree and First class/ division throughout academic career may apply.</p>

<p>Desirable Qualification: Proficiency in Coding Algorithms and Bioinformatics Applications, evidenced by short trainings or computing courses.</p>

<p>The positions are purely temporary and co-terminus with the tenure of the training period as mentioned above. NIPGR reserves the right to select the candidate against the above fellowship depending upon the qualification and experience of the candidate. Reservations shall be as per Govt. of India norms. The applicants will have no claim implicit or explicit for consideration against any regular position of DISC/NIPGR.</p>

<p>Eligible candidates may apply online application form available</p>

<p>at http://www.nipgr.res.in/discform.html within 15 days from the date of</p>

<p>advertisement.Applications received through any other mode will be disqualified outright. </p>

<p>More at http://www.nipgr.res.in/discform.html</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/44672/libraries-or-management-tools-for-high-throughput-sequencing-data</guid>
	<pubDate>Fri, 04 Oct 2024 02:45:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/44672/libraries-or-management-tools-for-high-throughput-sequencing-data</link>
	<title><![CDATA[Libraries or management tools for high throughput sequencing data]]></title>
	<description><![CDATA[<ul>
<li><a href="http://gatb.inria.fr/"><span>GATB</span></a>&nbsp;Library.&nbsp;The&nbsp;<span>Genome Analysis Toolbox with de-Bruijn graph.&nbsp;</span>A large part of tools developed by the GenScale team are based on this library.<br />These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (<em>e.g.</em>&nbsp;metagenomes). Among them are (the full is available here:&nbsp;<a href="https://gatb.inria.fr/software/">https://gatb.inria.fr/software/</a>):</li>
<li><a href="https://github.com/morispi/LRez"><span>LRez</span></a>: C++ Library and toolkit for the barcode-based management and indexation of linked-read datasets.</li>
</ul><h2>Variant calling and/or genotyping</h2><ul>
<li><a href="https://gatb.inria.fr/software/discosnp/" title="DiscoSNP">DiscoSNP++ and&nbsp;discoSnpRAD</a>: Reference-free small variant discovery (SNPs and indels)</li>
<li><a href="https://gatb.inria.fr/software/mind-the-gap/" title="MindTheGap">MindTheGap</a>: Detection and assembly of large insertion variants</li>
<li><a href="https://gatb.inria.fr/software/takeabreak/" title="TakeABreak">TakeABreak</a>:&nbsp;reference-free inversion discovery tool</li>
<li><a href="https://github.com/llecompte/SVJedi">SVJedi</a>: Structural Variant genotyper with long read data</li>
<li><a href="https://github.com/SandraLouise/SVJedi-graph">SVJedi-graph</a>: Structural Variant genotyper with long read data using a variation graph</li>
</ul><h2>Sequence assembly</h2><ul>
<li><a href="https://github.com/cguyomar/MinYS">MinYS</a>: reference-guided genome assembly in metagenomics data</li>
<li><a href="https://github.com/anne-gcd/MTG-Link">MTG-link</a>: local assembly tool for linked-read data</li>
<li><a href="https://gatb.inria.fr/software/minia/" title="Minia">Minia</a>: De novo short read assembler</li>
<li><a href="https://gatb.inria.fr/de-novo-genome-assembly/">de-novo pipeline</a>:&nbsp;<em>de-novo</em>&nbsp;assembly pipeline (error correction / contigs / scaffolding) for genomes and meta-genomes</li>
<li><a href="https://gatb.inria.fr/software/mapsembler/" title="Mapsembler2">Mapsembler2</a>: Targeted assembly (not maintained)</li>
</ul><h2>Managing k-mers &amp; indexation</h2><ul>
<li><a href="https://github.com/lrobidou/findere">findere</a>:&nbsp;simple strategy for speeding up queries and for reducing false positive calls from any Approximate Membership Query data structure.
<ul>
<li><a href="https://github.com/lrobidou/fimpera">fimpera</a>&nbsp;extends findere adding the abundance information.</li>
</ul>
</li>
<li><a href="https://github.com/tlemane/kmtricks">kmtricks</a>:&nbsp;modular tool suite for counting kmers, and constructing Bloom filters or kmer matrices, for large collections of sequencing data.</li>
<li><a href="https://github.com/tlemane/kmindex">kmindex&nbsp;</a>is a tool for indexing and querying sequencing samples. It is built on top of kmtricks.</li>
<li><a href="https://github.com/pierrepeterlongo/back_to_sequences">back to sequences</a>: Find sequences (reads, unitigs, genes) related to a set of kmers in large datasets, in a matter of seconds.</li>
<li><a href="https://github.com/vicLeva/bqf">Backpack Quotient Filter</a>:&nbsp;k-mer indexing data structure with abundance</li>
<li><a href="http://github.com/GATB/rconnector">short read connector</a>:&nbsp;Detect similar reads from potentially large read set</li>
<li><a href="https://gatb.inria.fr/software/dsk/" title="DSK">DSK</a>:&nbsp;Count K-mer in sequences</li>
</ul><h2>Pangenome graph manipulation</h2><ul>
<li><a href="https://github.com/Tharos-ux/pancat">Pancat</a>: Pangenome Comparison and Analysis Toolkit</li>
<li><a href="https://pypi.org/project/gfagraphs/">GFAGraphs</a>: a Python library to handle pangenome graph files in GFA format.</li>
</ul><h2>Comparative metagenomics with k-mers</h2><ul>
<li><a href="https://github.com/GATB/simka">Simka and SimkaMin</a>:&nbsp;Comparative metagenomics for large-scale datasets</li>
<li><a href="https://team.inria.fr/genscale/high-throughput-sequence-analysis/compreads-metagenomic-data-analysis/">Comparead &amp; Commet</a>:&nbsp;comparison of metagenomic datasets</li>
</ul><h2>Species and bacterial strains identification</h2><ul>
<li><a href="https://github.com/gsiekaniec/ORI">ORI</a>: software using long nanopore reads to identify bacteria present in a sample at the strain level</li>
<li><a href="https://github.com/kevsilva/StrainFLAIR">StrainFLAIR</a>:&nbsp;STRAIN-level proFiLing using vArIation gRaph</li>
</ul><h2>General-purpose sequencing data manipulation</h2><ul>
<li><a href="https://team.inria.fr/genscale/ngs-software/gassst/">GASSST</a>:&nbsp;long read mapper</li>
<li><a href="https://gatb.inria.fr/software/leon/" title="Leon">Leon</a>: short read compressor (now included in GATB-core)</li>
<li><a href="https://gatb.inria.fr/software/bloocoo/" title="Bloocoo">Bloocoo</a>:&nbsp;short read corrector</li>
<li><a href="https://github.com/GATB/bcalm">BCALM</a>:&nbsp;Construct compacted de Bruijn graphs (unitigs)</li>
</ul><h2>&nbsp;Protein Structure</h2><ul>
<li><a href="https://team.inria.fr/genscale/protein-structure/a-purva-contact-map-overlap-solver/">A_Purva</a>:&nbsp;Contact Map Overlap solver</li>
<li><a href="https://team.inria.fr/genscale/protein-structure/md-jeep-distance-geomtry-solver/">MD-Jeep</a>:&nbsp;Distance Geometry solver</li>
<li><a href="https://team.inria.fr/genscale/csa-comparative-structural-alignment/">CSA</a>:&nbsp;Comparative Structural Alignment</li>
</ul><h2>Workflow</h2><ul>
<li><a href="https://team.inria.fr/genscale/workflows/slicee/">SLICEE</a>:&nbsp;parallel execution of bioinformatics workflows</li>
</ul><h3>Comparative Genomics</h3><ul>
<li><a href="https://team.inria.fr/genscale/comparative-genomics/cassis/">CASSIS</a>:&nbsp;detection of rearrangement breakpoints</li>
<li><a href="https://team.inria.fr/genscale/high-throughput-sequence-analysis/plast-intensive-sequence-comparison/">PLAST</a>:&nbsp;intensive bank-to-bank sequence comparison</li>
<li><a href="https://github.com/stephanierobin/DrjBreakpointFinder">DRJBreakpointFinder</a>: detection and precise localization of excision sites in proviral segments</li>
</ul>]]></description>
	<dc:creator>LEGE</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</guid>
	<pubDate>Tue, 19 Dec 2017 18:49:28 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/34711/1mb-long-dna-with-nanopore-technology</link>
	<title><![CDATA[1mb long DNA with Nanopore technology]]></title>
	<description><![CDATA[<p>The first continuous DNA read of more than a million bases (&gt;1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO</p>]]></description>
	<dc:creator>Jit</dc:creator>
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