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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/29992?offset=260</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37230/navigator-network-analysis-visualization-and-graphing-toronto</guid>
	<pubDate>Tue, 03 Jul 2018 05:05:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37230/navigator-network-analysis-visualization-and-graphing-toronto</link>
	<title><![CDATA[NAViGaTOR: Network Analysis, Visualization and Graphing Toronto]]></title>
	<description><![CDATA[NAViGaTOR –  Network Analysis, Visualization, &amp; Graphing TORonto is a software system for scaleable visualizing and analyzing networks.

The current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output options, brings new network views and analysis algorithms.

http://142.150.188.236/navigatorwp/<p>Address of the bookmark: <a href="http://142.150.188.236/navigatorwp/" rel="nofollow">http://142.150.188.236/navigatorwp/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/39603/tenure-track-position-in-bioinformatics-at-institute-of-neurobiology-unam-queretaro-mexico</guid>
  <pubDate>Mon, 10 Jun 2019 00:48:54 -0500</pubDate>
  <link></link>
  <title><![CDATA[Tenure Track position in Bioinformatics at Institute of Neurobiology, UNAM, Querétaro, México]]></title>
  <description><![CDATA[
<p>The Institute of Neurobiology UNAM (www.inb.unam.mx) offers a tenure-track position at the level of Assistant Professor (Investigador Asociado C) to develop an original research program in Bioinformatics with applications to neuroscience and to establish multidisciplinary collaboration with other members of the Institute. Applicants are expected to have a doctorate degree, postdoctoral experience related to bioinformatics or genome biology, and a strong track record of peer-reviewed publications. No previous experience in neuroscience is required.</p>

<p>Interested applicants must submit CV and addresses of three references to ataulfo@unam.mx.</p>

<p>Tenure Track position in Genomic Sciences  </p>

<p>Laboratorio Internacional de Investigación sobre el Genoma Humano, UNAM Juriquilla, Querétaro, México </p>

<p>The International Laboratory for Human Genome Research, LIIGH-UNAM (www.liigh.unam.mx) offers a tenure-track position at the level of Assistant Professor (Investigador Asociado C) to perform research, teaching and formation of human resources in the area of: “Genomics of Mendelian Diseases” </p>

<p>Applicants are expected to have a doctorate degree, postdoctoral experience related to the above mentioned area and a strong track record of peer-reviewed publications. Interested applicants must submit CV, email addresses of three references, and a three-page project to Dr. Rafael Palacios, Coordinator of LIIGH-UNAM (palacios@liigh.unam.mx) before June 21, 2019 ………………………………………………………………</p>

<p>Tenure Track position in Genomic Sciences </p>

<p>Laboratorio Internacional de Investigación sobre el Genoma Humano, UNAM Juriquilla, Querétaro, México </p>

<p>The International Laboratory for Human Genome Research, LIIGH-UNAM (www.liigh.unam.mx) offers a tenure-track position at the level of Assistant Professor (Investigador Asociado C) to perform research, teaching and formation of human resources in the area of: “Statistic Population Genomics and its Impact in Complex Diseases” </p>

<p>Applicants are expected to have a doctorate degree, postdoctoral experience related to the above mentioned area and a strong track record of peer-reviewed publications. Interested applicants must submit CV, email addresses of three references, and a three-page statement of research interests to Dr. Rafael Palacios, Coordinator of LIIGH-UNAM (palacios@liigh.unam.mx) before June 21, 2019</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</guid>
	<pubDate>Wed, 24 Oct 2018 22:38:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models</link>
	<title><![CDATA[RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models]]></title>
	<description><![CDATA[<p><span>The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling and quality control features. The software suite also contains methods for visualizing simulation results and omics data, as well as a range of methods for performing simulations and analyzing the results. The software is a useful tool for system-wide data analysis in a metabolic context and for streamlined reconstruction of metabolic networks based on protein homology.</span></p><p>Address of the bookmark: <a href="https://github.com/SysBioChalmers/RAVEN" rel="nofollow">https://github.com/SysBioChalmers/RAVEN</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/40248/industrial-training-in-computer-aided-drug-designing-cadd</guid>
	<pubDate>Wed, 13 Nov 2019 05:00:44 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/40248/industrial-training-in-computer-aided-drug-designing-cadd</link>
	<title><![CDATA[Industrial Training in Computer Aided Drug Designing (CADD)]]></title>
	<description><![CDATA[<p>Learn More about&nbsp; Computer Aided Drug Designing (CADD)!!!</p><p>#rasalsi #rasa In our Industrial program you will get Knowledge on RNA Seq, CHIP Seq,</p><h2 style="text-align: center;"><strong>Batch Starts From 18<sup>th</sup> November 2019</strong></h2><p>#hurryup #registernow #enquirenow The primary goal of the industrial training program is to provide students with necessary skills making with employable. RASA LSI trains students with the enhanced skills required for them to excel in jobs in biotechnology, pharmaceuticals, BioIT and related industry sectors. At Rasa you will&nbsp; learn from industry leaders&nbsp;how to apply these skills in life science &amp; have a command over software developing process &nbsp;by using various methodologies. For Registration visit us on: https://www.rasalsi.com/index.php/front-page/industrial-training/</p>]]></description>
	<dc:creator>RASA Life Sciences</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</guid>
	<pubDate>Wed, 03 Jun 2020 08:00:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41820/shinygo-v061-gene-ontology-enrichment-analysis-more</link>
	<title><![CDATA[ShinyGO v0.61: Gene Ontology Enrichment Analysis + more]]></title>
	<description><![CDATA[<p>2/3/2020: Now published by&nbsp;<a href="https://doi.org/10.1093/bioinformatics/btz931" target="_blank">Bioinformatics.</a></p>
<p>11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more.</p>
<p>5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms and othe pathways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), Ensembl plants (R. 43) and Ensembl Metazoa (R. 43). An additional 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also produces KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene characterristics plots, and enriched promoter motifs.&nbsp;</p><p>Address of the bookmark: <a href="http://bioinformatics.sdstate.edu/go/" rel="nofollow">http://bioinformatics.sdstate.edu/go/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/41041/post-doc-computational-biology-bioinformatics-network-biology-data-science-ngs-mfd</guid>
  <pubDate>Sat, 15 Feb 2020 06:13:35 -0600</pubDate>
  <link></link>
  <title><![CDATA[Post Doc Computational Biology, Bioinformatics - Network Biology &amp; Data Science, NGS (m/f/d)]]></title>
  <description><![CDATA[
<p>https://www.jobvector.de/jobs-stellenangebote/biologie-life-sciences/forschung-entwicklung/post-doc-computational-biology-bioinformatics-network-biology-data-science-ngs-129867.html?suid=e522e9793b41817e52ac58d6963b94e2519920df</p>

<p>Requirements<br />Doctoral degree in Bioinformatics, Computational Biology, (Bio)physics/-mathematics, Biochemistry/Biology or similar with strong quantitative and numeric focus<br />Ability to numerically process complex and large data sets<br />Good programming skills (R/Bioconductor and/or Python preferred, Linux is a plus)<br />Experience in analyzing next-generation sequencing data sets using network biology<br />Scientific publication record in applied bioinformatics<br />Familiarity with single cell NGS analyses and other –omics techniques is a plus, but not essential</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</guid>
	<pubDate>Wed, 08 Feb 2023 04:22:01 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44188/understanding-go-analysis</link>
	<title><![CDATA[Understanding GO analysis]]></title>
	<description><![CDATA[<p>The confusion about gene ontology and gene ontology analysis can start right from the term itself. There are actually two different entities that are commonly referred to as gene ontology or &ldquo;GO&rdquo;:</p>
<ol>
<li>the&nbsp;<span>ontology itself</span>, which is a set of terms with their precise definitions and defined relationships between them, and</li>
<li>the&nbsp;<span>associations between gene products and GO terms</span>, which are used to capture the existing knowledge about what each gene is known to do.</li>
</ol>
<p>But the term gene ontology, or GO, is commonly used to refer to both, which is sometimes a source of potential confusion. In order to avoid this, here we will use the term &ldquo;GO ontology&rdquo; to describe the set of terms and their hierarchical structure and &ldquo;GO annotations&rdquo; to describe the set of associations between genes and GO terms.</p>
<p>There are 3 types of terms, or domains if you wish, in the gene ontology:</p>
<ul>
<li>Biological Processes (BP)</li>
<li>Molecular Functions (MF)</li>
<li>Cellular Components (CC)</li>
</ul><p>Address of the bookmark: <a href="https://advaitabio.com/faq-items/understanding-gene-ontology/" rel="nofollow">https://advaitabio.com/faq-items/understanding-gene-ontology/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/41924/senior-scientist-bioinformatics-it-at-regional-centre-for-biotechnology</guid>
  <pubDate>Tue, 30 Jun 2020 22:04:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Scientist (Bioinformatics/ IT) at Regional Centre for Biotechnology]]></title>
  <description><![CDATA[
<p>Regional Centre for Biotechnology</p>

<p>An Institution of National Importance established by Dept. of<br />Biotechnology, Govt. of India Under the auspices of UNESCO</p>

<p>Advertisement No. RCB/IBDC/01/2020/Recruitment/HR</p>

<p>Recruitment For Contractual Positions Under The Project<br />Indian Biological Data Centre (IBDC) Phase-1</p>

<p>Regional Centre for Biotechnology (RCB) invites online applications from suitably qualified, dynamic, result-oriented and dedicated candidates for the following positions under the project Indian Biological Data Centre (BIDC) Phase-1 on contract basis:</p>

<p>Industry: Biotechnology</p>

<p>Location: Faridabad (Haryana, India)</p>

<p>Project Head - 1</p>

<p>Senior Scientist (Bioinformatics/ IT) - 1</p>

<p>For other details, visit: www.rcb.res.in. Last date for receipt of online application is 18th July 2020.</p>

<p>Registrar</p>

<p>Regional Centre for Biotechnology<br />Faridabad-Gurgaon Expressway,<br />Faridabad - 121001</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44620/diy-transcriptomics</guid>
	<pubDate>Wed, 31 Jul 2024 01:19:26 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44620/diy-transcriptomics</link>
	<title><![CDATA[DIY Transcriptomics]]></title>
	<description><![CDATA[<p><span>A semester-long course covering best practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies, with a primary focus on empowering students to be independent in the use of lightweight and open-source software using the R programming language and the Bioconductor suite of packages. This course follows a hybrid format in which online lectures are paired with in-person labs where students participate in hands-on, live coding exercises using real &lsquo;omic datasets. The course is focused on datasets and topics central to infectious disease research, immunology, and One-Health, but the concepts and approaches covered are applicable to any genomic study.</span></p>
<p>https://diytranscriptomics.com</p><p>Address of the bookmark: <a href="https://diytranscriptomics.com" rel="nofollow">https://diytranscriptomics.com</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42172/sr-scientist-bioinformatics-vacancies-at-indian-institute-of-toxicology-research-india</guid>
  <pubDate>Tue, 01 Sep 2020 07:21:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[Sr. Scientist Bioinformatics Vacancies at Indian Institute of Toxicology Research, India]]></title>
  <description><![CDATA[
<p>Start date of online Registration: Wednesday August 19, 2020 11:00 Hrs IST<br />Last date for Registration: Monday September 21, 2020 17:30 Hrs IST<br />Last date for submission of online application: Monday September 21, 2020 17:30 Hrs IST<br />Last date of Receipt of physical copy of application at CSIR-IITR: Tuesday October 05, 2020 17:30 Hrs IST</p>

<p>Pay Matrix Level-12<br />No. of Post-01<br />(UR)<br />Post – Sr. Scientist<br />Area Bioinformatics<br />Age limit : 37 years<br />PhD in Computational Biology/Bioinformatics with 2 years experience in desired area<br />Or<br />ME/M.Tech in Bioinformatics or Genome Informatics or Genetic Engineering with 3 years experience in desired area<br />Experience of understanding fundamental science behind Artificial Intelligence, machine learning, novel Artificial Intelligence algorithms and architectures, software engineering principles for Artificial Intelligence, natural language processing with proficiency in programming as evident by publications in SCI journals with high impact factor. To be part a group of scientists working in the area of genomics, running the central<br />bioinformatics facility, developing independent projects and providing bioinformatics support to the user scientists of the Institute.</p>

<p>More at </p>

<p>http://14.139.62.50/CSIR-IITR%20Scientist%20Recruitment%20Adv%202020.pdf</p>
]]></description>
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