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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30090?offset=340</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/19090/deeptools</guid>
	<pubDate>Sat, 08 Nov 2014 15:02:08 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/19090/deeptools</link>
	<title><![CDATA[deepTools]]></title>
	<description><![CDATA[<p>deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. To do so, deepTools contains useful modules to process the mapped reads data to create coverage files in standard bedGraph and bigWig file formats. By doing so, deepTools allows the creation of normalized coverage files or the comparison between two files (for example, treatment and control). Finally, using such normalized and standardized files, multiple visualizations can be created to identify enrichments with functional annotations of the genome.<br /><br />Publicaton: http://nar.oxfordjournals.org/content/early/2014/05/05/nar.gku365.full<br /><br />Source Code and Wiki: https://github.com/fidelram/deepTools/wiki<br /><br />Galaxy Tool Shed repository: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools<br /><br />and example Galaxy workflows: http://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_workflows</p>]]></description>
	<dc:creator>Martin Jones</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/19631/rosalind-bioinformatics-problems</guid>
	<pubDate>Thu, 18 Dec 2014 10:32:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/19631/rosalind-bioinformatics-problems</link>
	<title><![CDATA[Rosalind Bioinformatics problems !!!]]></title>
	<description><![CDATA[<p>Rosalind is a platform for learning bioinformatics and programming through problem solving. <a href="http://rosalind.info/problems/list-view/">Take a tour</a> to get the hang of how Rosalind works.</p>
<p>http://rosalind.info/problems/list-view/</p><p>Address of the bookmark: <a href="http://rosalind.info/problems/list-view/" rel="nofollow">http://rosalind.info/problems/list-view/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26993/lastz</guid>
	<pubDate>Mon, 18 Apr 2016 04:41:55 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26993/lastz</link>
	<title><![CDATA[LASTZ]]></title>
	<description><![CDATA[<p>LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.</p>
<p>More at http://www.bx.psu.edu/~rsharris/lastz/</p>
<p>Thesis: http://www.bx.psu.edu/~rsharris/rsharris_phd_thesis_2007.pdf</p><p>Address of the bookmark: <a href="http://www.bx.psu.edu/~rsharris/lastz/" rel="nofollow">http://www.bx.psu.edu/~rsharris/lastz/</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/22567/rosalind-problem-solution-with-perl</guid>
	<pubDate>Tue, 09 Jun 2015 23:35:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/22567/rosalind-problem-solution-with-perl</link>
	<title><![CDATA[Rosalind Problem Solution with Perl]]></title>
	<description><![CDATA[<p>Rosalind is a platform for learning bioinformatics and programming through problem solving. <a href="http://rosalind.info/problems/list-view/?location=bioinformatics-textbook-track">Take a tour</a> to get the hang of how Rosalind works.</p><p>Bioinformatics Textbook Track</p><p>Find more about Rosalind puzzle at http://rosalind.info/problems/list-view/?location=bioinformatics-textbook-track</p><p>I will provide solution of all the Rosalind problem with Perl for community.</p><p>Check out the right sidebar for more links ...</p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22616/research-associate-manit-allahabad-uttar-pradesh</guid>
  <pubDate>Fri, 12 Jun 2015 05:44:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate MANIT - Allahabad, Uttar Pradesh]]></title>
  <description><![CDATA[
<p>Applications are invited from Indian nationals for the post of Research Assistant (on contract) in research project entitled “Identification of novel drug targets in Aspergillus fumigatus genome prioritized by essentiality based screening and rational designing of new antifungal compounds” sanction order no. CST/238 dated 12/05/2015 sponsored by Council of Science and Technology U.P. </p>

<p>The duly completed application on prescribed format along with copies of supporting documents must reach to: Office of the Dean (Research &amp; Consultancy), Motilal Nehru National Institute of Technology, Allahabad-211004 on or before 03/07/2015. </p>

<p>The position is purely temporary and will be governed by the funding agency rules &amp; service conditions of Office of the Dean (Research &amp; Consultancy), MNNIT Allahabad. </p>

<p>For detail advertisement see: www.mnnit.ac.in/images/newstories/Advertisement_for_the_post_of_Research_Assistant_in_UPCST_Project_of_Biotechnology_Department.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22779/research-associate-at-international-centre-for-genetic-engineering-and-biotechnology-icgeb</guid>
  <pubDate>Wed, 17 Jun 2015 18:49:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate at International Centre for Genetic Engineering and Biotechnology (ICGEB)]]></title>
  <description><![CDATA[
<p>Research Associate<br />International Centre for Genetic Engineering and Biotechnology (ICGEB)<br />Address: Aruna Asaf Ali Marg, Jawaharlal Nehru University, New Delhi<br />Postal Code: 110067<br />City: New Delhi<br />State: Delhi<br />Qualifications: Experience in many docking softwares and operating systems is essential. Additional experience in bioinformatics and computational biology tools will be useful.<br />Details will be available at: http://www.icgeb.org/vacancies.html<br /> <br />How To Apply: Submit curriculum vitae to: sb.icgeb@gmail.com<br />Last Date: 5 July 2015</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22788/research-associate-bioinformatics-job-position-in-indian-agricultural-statistics-research-institute-iasri-pusa-new-delhi</guid>
  <pubDate>Wed, 17 Jun 2015 20:48:40 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatics job position in Indian Agricultural Statistics Research Institute (IASRI), Pusa, New Delhi]]></title>
  <description><![CDATA[
<p>Research Associate Statistics</p>

<p>Eligibility : M Phil / Phd, MSc</p>

<p>Location : Delhi</p>

<p>Last Date : 27 Jun 2015</p>

<p>Hiring Process : Walk - In<br />Indian Agricultural Statistics Research Institute (IASRI) - Job DetailsDate of posting:03 Jun 15</p>

<p>Research Associate Statisticsjob position in Indian Agricultural Statistics Research Institute (IASRI)<br />on purely contractual temporary basis</p>

<p>Project : “ICAR-Network Project of Transgenic in Crops”</p>

<p>Qualification : Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent OR Post-Graduation in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application/ Life Science/ Biotechnology/ Agricultural Science or equivalent with 1st Division or 60% marks or equivalent with at least two years of research experience.</p>

<p>No.of Post: 01</p>

<p>Emoluments for RA: Consolidated Rs. 24000/- per month + 30% HRA for Ph.D holders and consolidated Rs. 23000/- per month + 30% HRA for Master Degree.</p>

<p>Age Limit : 40 years<br />How to apply</p>

<p>Walk-in-interview will be held on 27th June 2015, 10.30 A.M at IASRI, Pusa, New Delhi</p>

<p>More at http://iasri.res.in/employment/employment.htm</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22944/icgeb-bioinformatics-research-associate-vacancy</guid>
  <pubDate>Thu, 25 Jun 2015 20:41:00 -0500</pubDate>
  <link></link>
  <title><![CDATA[ICGEB Bioinformatics Research Associate Vacancy]]></title>
  <description><![CDATA[
<p>Research Associate Position at ICGEB, New Delhi with Dr. Amit Sharma</p>

<p>Starting 15th July 2015, the position relates to a project specifically for in silico drug docking, screening, design, optimisation and linkage with active chemists. </p>

<p>Experience in many docking softwares and operating systems is essential. </p>

<p>Additional experience in bioinformatics and computational biology tools will be useful. </p>

<p>Submit curriculum vitae to: sb.icgeb@gmail.com</p>

<p>Closing date: 5 July 2015</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23384/research-scientist-at-dupont</guid>
  <pubDate>Fri, 17 Jul 2015 20:36:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Scientist at DuPONT]]></title>
  <description><![CDATA[
<p>Research Scientist<br />Hyderabad, Telangana<br />Job Description</p>

<p>Job Description</p>

<p>The Global Trait Discovery Informatics (GTDI) group located at the DuPont Knowledge Centre (DKC), Hyderabad, India is currently seeking applications for a highly motivated computational biologist. The GTDI group contributes to research programs in plant biotechnology at the DKC as well as across research centers located in DuPont Pioneer, Johnston, Iowa and at the DuPont Experimental Station in Wilmington, Delaware.</p>

<p>We are looking for candidates who have experience in analysis of high-throughput -omics datasets. The researcher will be primarily responsible for analyzing diverse -omics datatypes, such as transcriptomics, proteomics and metabolomics and actively contribute towards building streamlined solutions.</p>

<p>The candidate will be part of a diverse team of experimental biologists, computational biologists and software developers. A critical aspect of this position involves working with global teams across multiple locations and will require effective project coordination and communication skills. This is an exciting opportunity for candidates with strong data driven skills, who want to work at the interface of computational and experimental biology and contribute towards scientific discovery.</p>

<p>Responsibilities</p>

<p>·Integrate and analyze multiple datatypes in the context of experimental observations with a goal towards formulating testable hypothesis.</p>

<p>·Understanding the research questions from experimental biologists and formulate relevant in silico analyses.</p>

<p>·Establish and implement systematic analysis workflows starting from processing of raw data to biological interpretation.</p>

<p>·Critically analyze a wide variety of experimental data with a view to solving the underlying research questions.</p>

<p>·Identify and generate datasets for scientific testing and evaluation of algorithms.</p>

<p>Qualifications</p>

<p>PhD in computational biology, bioinformatics, population genetics, complex systems, computer sciences or any relevant physical or mathematical sciences, with experience in analyzing diverse -omics datasets.</p>

<p>Job Qualifications</p>

<p>Qualifications</p>

<p>PhD in computational biology, bioinformatics, population genetics, complex systems, computer sciences or any relevant physical or mathematical sciences, with experience in analyzing diverse -omics datasets.</p>

<p>More at http://careers.dupont.com/jobsearch/job-details/research-scientist/006077W-01/</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/23247/ra-at-csir-urdip</guid>
  <pubDate>Fri, 10 Jul 2015 18:34:03 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA at CSIR-URDIP]]></title>
  <description><![CDATA[
<p>CSIR - UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS (CSIR- URDIP)</p>

<p>Adv. No. URDIP/ 15/2015</p>

<p>Opportunity for young Bioinformatics Professionals to make a career in the area of Intellectual Property</p>

<p>CSIR has set up a Unit for Research and Development of Information Products (CSIRURDIP) at Pune to work in the area of scientific informatics. One of the major focus areas of research work at CSIR-URDIP is PATENT INFORMATICS. With the increasing applications of Bioinformatics in the areas of life sciences industry such as Agriculture and Health Care (Diagnostics and Drugs), the output of research in these area is being protected by different forms of Intellectual Property rights. Realizing the importance of IP in the Bioinformatics field, Department of Biotechnology (DBT) has sanctioned a project on “Development, Facilitation and Harvesting of Bioinformatics related Intellectual Property” at CSIR-URDIP.</p>

<p>The project will involve application of Patent Informatics tools and techniques to Bioinformatics (including creation of patent landscapes, preparation of techno-legal reports of patentability, freedom to operate studies) to help protect IPRs and develop and conduct training programmes on IPRs related to Bioinformatics.</p>

<p>CSIR-URDIP invites applications from young Bioinformatics professionals to work on this emerging area which offers challenging opportunities and attractive career possibilities in future.</p>

<p>Position I: Research Associate</p>

<p>No of Positions: One</p>

<p>Consolidated amount Payable: = Rs 26,400.00</p>

<p>Qualification: PhD in Bioinformatics. In exceptional cases, candidature of M. Tech. candidates with First class in Bioinformatics with three years of relevant work experience will also be considered.</p>

<p>Job requirement: The prospective candidate will be expected to identify patents/scientific literature in field of Bioinformatics, evaluate them Vis a Vis other patents in fields and come up landscape / FTO / Patentability reports.</p>

<p>Age Limit: 35 years. </p>

<p>The candidates meeting the above criteria may appear for walk in interview at their cost on Monday 13th July 2015 at 02:00 p.m. with the CV and supporting documents (original plus copies) at the following address: CSIR Unit or Research and Development of Information Products (URDIP), "Tapovan" S.No. 113 &amp; 114, Near NCL Colony Baner Side Gate, NCL Estate, Pashan Road, Pune-411008, Maharashtra, India</p>

<p>Advertisement: www.urdip.res.in/download/DBT_RA_Advt_July%202015.pdf</p>
]]></description>
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