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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30104?offset=1190</link>
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	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/21367/a-guide-for-complete-r-beginners-r-syntax</guid>
	<pubDate>Fri, 20 Feb 2015 23:41:03 -0600</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/21367/a-guide-for-complete-r-beginners-r-syntax</link>
	<title><![CDATA[A guide for complete R beginners :- R Syntax]]></title>
	<description><![CDATA[<p>R is a functional based language, the inputs to a function, including options, are in brackets. Note that all dat and options are separated by a comma</p><ul>
<li>Function(data, options)</li>
</ul><p>Even quit is a function</p><ul>
<li>q()</li>
</ul><p>So is help</p><blockquote><p><strong>help(read.table)</strong></p></blockquote><p>Provides the help page for the FUNCTION &lsquo;read.table&rsquo;</p><blockquote><p><strong>help.search(&ldquo;t test&rdquo;)</strong></p></blockquote><p>Searches for help pages that might relate to the phrase &lsquo;t test&rsquo;</p><p><strong>NOTE</strong>: quotes are needed for search strings, they are not needed when referring to data objects or function names.</p><p>There is a short cut for help,</p><p>? shows the help page on a function name, same as <em>help(function)</em></p><blockquote><p><strong>?read.table</strong></p></blockquote><p>?? searches for help pages on functions, same as <em>help.search(&lsquo;phrase&rsquo;)</em></p><blockquote><p><strong>??&ldquo;t test&rdquo;</strong></p></blockquote><p>Information is usually returned from a function, by default this is printed to screen</p><blockquote><p><strong>read.table(&lsquo;data.tsv&rsquo;)</strong></p></blockquote><p>This can always be stored, we call what it is stored in an &lsquo;object&rsquo;</p><p><strong>mydata </strong></p><p>here <strong>mydata</strong> is an object of type <span style="text-decoration: underline;">dataframe</span></p><p><strong>Reminder:</strong></p><ul>
<li>Vector: a list of numbers, equivalent to a column in a table</li>
<li>Data Frame = a collection of vectors. Equivalent to a table</li>
</ul><p><strong>Hint</strong>:</p><ul>
<li>Up/Down arrow keys can be use to cycle through previous commands</li>
</ul>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21472/asst-professor-at-central-university-of-jharkhand-cuj</guid>
  <pubDate>Sun, 01 Mar 2015 01:17:52 -0600</pubDate>
  <link></link>
  <title><![CDATA[Asst. Professor at Central University of Jharkhand (CUJ)]]></title>
  <description><![CDATA[
<p>Central University of Jharkhand (CUJ) has issued a recruitment notification for the recruitment of Assistant Professor through recruitment notification – Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015. Candidates who have completed M.Sc, Ph.D can apply for the new recruitment notification from Central University of Jharkhand (CUJ)</p>

<p>Central University of Jharkhand has been granted funds by the Department of Biotechnology (DBT), Govt. of India to establish “DBT-Boost to CUJ Interdisciplinary Life Sciences Departments for Education and Research” Applications are invited for the Assistant Professor on purely temporary basis. The appointments shall be initially for a period of one year, renewable every year depending on the satisfactory performance, till the end of project.</p>

<p>Position: ASSISTANT PROFESSOR (Total 03)<br />Salary: 45,000/- (fixed) per month<br />Essential Qualifications: i. Good academic record with at least 55% marks (or an equivalent grade in a point scale wherever grading system is followed) at the master’s degree level with specialization in Biodiversity and Systematic/ Systems Biology/ Biophysics/ Bioinformatics from an Indian  University, or an equivalent degree from an accredited foreign university. ii. Besides fulfilling the above qualifications, the candidates must have cleared the National Eligibility Test (NET) conducted by the UGC, CSIR or similar test accredited by the UGC like SLET/SET. iii. Notwithstanding anything contained in i. and ii. candidates, who are or have been awarded Ph.D Degree in accordance with the University Grants Commission (Minimum Standards and Procedure for Award of Ph.D. Degree) Regulation, 2009, shall be exempted from therequirement of the minimum eligibility condition of NET/SLET/SET for recruitment and appointment of Assistant Professor. iv. NET/SLET/SET shall also not be required for such disciplines for which NET/SLET/SET in not conducted.<br />Desirable: Preference will be given to candidates having Ph.D in any of the above mentioned areas with NET</p>

<p>IMPORTANT DATES TO REMEMBER  :</p>

<p>Last Date to Apply for this job 24/3/2015</p>

<p>REFERENCE:</p>

<p>Central University of Jharkhand (CUJ) Recruitment 2015 –  Advt. No.: CUJ/Advt./14-15/15 Date: 26th Feb. 2015.</p>

<p>More at http://cuj.ac.in/careers.php</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37984/baum-%E2%80%93-improving-genome-assembly-by-adaptive-unique-mapping-and-local-overlap-layout-consensus</guid>
	<pubDate>Wed, 24 Oct 2018 23:35:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37984/baum-%E2%80%93-improving-genome-assembly-by-adaptive-unique-mapping-and-local-overlap-layout-consensus</link>
	<title><![CDATA[BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus]]></title>
	<description><![CDATA[<p><span>BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the results of existing assemblies that are obtained based on short or long sequencing reads.&nbsp;</span></p><p>Address of the bookmark: <a href="http://www.zhanyuwang.xin/wordpress/index.php/2017/07/21/baum-improving-genome-assembly-by-adaptive-unique-mapping-and-local-overlap-layout-consensus/" rel="nofollow">http://www.zhanyuwang.xin/wordpress/index.php/2017/07/21/baum-improving-genome-assembly-by-adaptive-unique-mapping-and-local-overlap-layout-consensus/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21624/ra-bioinformatics-at-ch-charan-singh-university-meerut</guid>
  <pubDate>Wed, 11 Mar 2015 09:07:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Ch. Charan Singh University, Meerut]]></title>
  <description><![CDATA[
<p>Ch. Charan Singh University, Meerut</p>

<p>http://molbiolabccsumrt.webs.com/</p>

<p>Applications are invited for one post of RA in a DBT funded research project “Creation of Bioinformatics Infrastructure Facility (BIF) for the promotion of Biology Teaching through Bioinformatics (BTBI) Scheme of BTISet”.</p>

<p>Candidate should have a Ph.D. degree in Bioinformatics/Biotechnology/Genetics and Plant Breeding with adequate experience in the area of Bioinformatics. If a suitable candidate for the post of RA is not available, a JRF/SRF may be appointed.</p>

<p>Candidate for the post of JRF/SRF should have Master’s degree in relevant subject with adequate experience in the area of Bioinformatics and should be NET/DBT-BINC qualified</p>

<p>Interested candidates may send their bio-data to Prof. H. S. Balyan (hsbalyan@gmail.com) (in exceptional case, bio-data may also be submitted at the time of interview) and attend the interview on Monday, March 30, 2015 at 11:00 AM in the Department of Genetics &amp; Plant Breeding, Ch. Charan Singh University, Meerut. Candidates shall bring their original documents at the time of interview for verification. No interview letters will be issued and no TA/DA will be paid.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38316/simba-a-genome-assembly-project-management-system</guid>
	<pubDate>Thu, 29 Nov 2018 08:52:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38316/simba-a-genome-assembly-project-management-system</link>
	<title><![CDATA[SIMBA: a Genome Assembly Project Management System]]></title>
	<description><![CDATA[<p><span>SIMBA</span><span>, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely downloaded, shared and modified.</span></p><p>Address of the bookmark: <a href="http://ufmg-simba.sourceforge.net/" rel="nofollow">http://ufmg-simba.sourceforge.net/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</guid>
	<pubDate>Tue, 17 Mar 2015 00:47:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/21703/coding-ground</link>
	<title><![CDATA[Coding Ground]]></title>
	<description><![CDATA[<p>Online coding group for most of the programming languages.</p>
<p>Code in almost all popular languages using Coding Ground.&nbsp;Edit, compile, execute and share your projects, 100% cloud.</p>
<p>http://www.tutorialspoint.com/codingground.htm</p><p>Address of the bookmark: <a href="http://www.tutorialspoint.com/codingground.htm" rel="nofollow">http://www.tutorialspoint.com/codingground.htm</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38668/gvolante-completeness-assessment-of-genometranscriptome-sequences</guid>
	<pubDate>Sun, 13 Jan 2019 07:03:25 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38668/gvolante-completeness-assessment-of-genometranscriptome-sequences</link>
	<title><![CDATA[gVolante: Completeness Assessment of Genome/Transcriptome Sequences]]></title>
	<description><![CDATA[<p><span>A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section</span></p><p>Address of the bookmark: <a href="https://gvolante.riken.jp/analysis.html" rel="nofollow">https://gvolante.riken.jp/analysis.html</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21851/bioinformatics-project-assistant-at-nitw</guid>
  <pubDate>Wed, 01 Apr 2015 01:43:27 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Project Assistant at NITW]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF TECHNOLOGY WARANGAL – 506 004</p>

<p>DEPARTMENT OF BIOTECHNOLOGY</p>

<p>No. NITW/Bio/ Date: 30th March 2015</p>

<p>ADVERTISEMENT FOR PROJECT FELLOW (Research Staff)</p>

<p>Applications are invited for the post of Project Fellow (Research Staff) for the project entitled ‘Metagenome derived nitroreductases for degradation of nitro compounds’ sponsored by the Department of Science and Technology (DST-INSPIRE), Govt. of India.</p>

<p>Position: Project Fellow (1 No.)</p>

<p>Project Duration: 5 years</p>

<p>Note: The post is purely on temporary basis for a period one year and may be extendable till the end of the project based on the progress of the candidate.</p>

<p>Emoluments: Rs. 14,000/- per month (Consolidated) for first two years and Rs. 16,000/- per month (Consolidated) for next three years.</p>

<p>Essential Qualifications:</p>

<p>i) First class in M.Tech/M.S (Biotechnology/Industrial Biotechnology/Bioinformatics) or equivalent. Or</p>

<p>ii) First class in M.Sc. (Biotechnology/Bioinformatics/Biochemistry/ Microbiology/Molecular biology).</p>

<p>Desirable Qualification: Preference will be given to candidates who have cleared NET/GATE or having prior work experience in Molecular biology/Bioinformatics sequence analysis.</p>

<p>Interested candidates may submit their application in plain paper along with Curriculum Vitae and photocopies of certificates in support of educational/professional qualifications. Application should be sent in a closed cover with a superscription on the cover “Application for the post of project fellow (DST-INSPIRE)” on or before 20.04.2015 (Monday) via Post to the Principal Investigator. Eligible candidates will be intimated through e-mail and called for interview at the Department of Biotechnology, NIT, Warangal. No TA/DA will be paid for attending the interview. Dr. K. Divakar (Principal Investigator) DST-INSPIRE Faculty Department of Biotechnology National Institute of Technology Warangal – 506 004. Telangana, India. E-mail: divakar@nitw.ac.in; kdivak@gmail.com</p>

<p>Advertisement: http://www.nitw.ac.in/nitw/announcements/2015/Notification_Project_Fellow_DST_INSPIRE_Biotechnology_NITW.pdf</p>
]]></description>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39217/caulobacter-ethensis-20-computer-generated-genome-of-a-living-organism</guid>
	<pubDate>Wed, 03 Apr 2019 08:45:22 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39217/caulobacter-ethensis-20-computer-generated-genome-of-a-living-organism</link>
	<title><![CDATA[Caulobacter ethensis - 2.0 : Computer-generated Genome of a Living Organism]]></title>
	<description><![CDATA[<div><span>All the genome sequences of organisms known throughout the world are stored in a database belonging to the National Center for Biotechnology Information in the United States. As of today, the database has an additional entry:&nbsp;<em><strong><span>Caulobacter ethensis</span></strong></em><span><strong><span>-2.0</span></strong>.&nbsp;</span></span></div><div><span><span>&nbsp;</span></span></div><div><span><span>It is the&nbsp;<strong>world's first fully computer-generated genome of a living organism</strong>, developed by scientists at ETH Zurich.&nbsp;</span></span></div><div><span><span>&nbsp;</span></span></div><div><span><span>However, it must be emphasised that although the genome for&nbsp;</span><em>C. ethensis</em>-2.0 was physically produced in the form of a very large DNA molecule, a corresponding organism does not yet exist.</span></div><div><span>&nbsp;</span></div><div><span><strong>Source</strong>:&nbsp;<a href="https://www.sciencedaily.com/releases/2019/04/190401171343.htm?utm_source=feedburner&amp;utm_medium=email&amp;utm_campaign=Feed%3A+sciencedaily%2Fmost_popular+%28Most+Popular+News+--+ScienceDaily%29">https://www.sciencedaily.com/releases/2019/04/190401171343.htm</a></span></div>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21930/bioinformatics-ra-at-ivri</guid>
  <pubDate>Tue, 07 Apr 2015 03:10:53 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics RA at IVRI]]></title>
  <description><![CDATA[
<p>A walk in interview is scheduled in the seminar hall of Veterinary Biotechnology Division of the institute on 9.04.15 at 10.30 am for the engagement of one Research associate (RA) in ICAR funded time bound project entitled “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>The engagement is purely temporary on contractual basis and co-terminus with the project. There will be no provision of absorption of absorption/reemployment in IVRI/DBT on termination of the project.</p>

<p>No TA/DA will be provided for appearing in the interview and no separate letter will be issued.</p>

<p>A. Name tile of the project: “Centre for Agricultural bioinformatics (CABin)”.</p>

<p>B. Position/post to be filled: Research Associate (one)</p>

<p>C. Essential/Desirable qualifications:</p>

<p>•Essential: M.V.Sc./M.Tech./MSc Degree in Biotechnology/ Biochemistry/ Microbiology/Immunology/Bioinformatics/Genetics/Life Sciences or</p>

<p>Masters in Computer Application/ Masters in Computer science with first division.</p>

<p>• Desirable: Experience in cell culture, next generation sequencing, C++ and perl programming. NET/GATE qualified will be preferred.</p>

<p>• Experience : At least 2 years</p>

<p>D. Emoluments: Rs. 23000/- per month + 20% HRA</p>

<p>E. Age Limit: Maximum 40 years for men and 45 years for women</p>

<p>F. Duration of the project: Up to March 2017</p>

<p>G. Name of PI/Contact person: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Division of Veterinary Biotechnology.</p>

<p>H. Address for correspondence: Dr. G.V.P.P.S. Ravi Kumar, Sr. Scientist, Computational Biology and Genomics facility,Division of Veterinary Biotechnology, I.V.R.I., Izatnagar – 243122</p>

<p>Advertisement: www.ivri.nic.in/jobs/WalkIn_interview_01042015.pdf</p>
]]></description>
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