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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30149?offset=850</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/22068/binc-examination-2015</guid>
	<pubDate>Fri, 17 Apr 2015 03:34:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/22068/binc-examination-2015</link>
	<title><![CDATA[BINC examination 2015 !!!]]></title>
	<description><![CDATA[<p>BioInformatics National Certification (BINC) Examination 2015 organized by Department of Biotechnology, Government of India, New Delhi Pondicherry University, Puducherry</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/22068" length="281577" type="application/pdf" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40604/gapfinisher-a-reliable-gap-filling-pipeline-for-sspace-longread-scaffolder-output</guid>
	<pubDate>Fri, 24 Jan 2020 06:04:40 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40604/gapfinisher-a-reliable-gap-filling-pipeline-for-sspace-longread-scaffolder-output</link>
	<title><![CDATA[gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output]]></title>
	<description><![CDATA[<p><span>gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and GMcloser. </span></p>
<p><span>gapFinisher can fill gaps in draft genomes quickly and reliably.</span></p><p>Address of the bookmark: <a href="https://github.com/kammoji/gapFinisher" rel="nofollow">https://github.com/kammoji/gapFinisher</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22234/national-institute-of-biologicals-recruitment-2015</guid>
  <pubDate>Mon, 27 Apr 2015 19:44:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[National Institute of Biologicals Recruitment 2015]]></title>
  <description><![CDATA[
<p>National Institute of Biologicals (NIB), Noida<br />Job Code: 260415(04)Y</p>

<p>National Institute of Biologicals (NIB), Noida invites applications to recruit on vacant posts of Scientist, Training Officer, Administrative Assistant, Stenographer, Junior Engineer, Computer Operator etc. Applications against these Government Jobs can be submitted on or before 01 July 2015.</p>

<p>NIB Vacancy 2015 Details<br />1. Scientist Grade III – 06<br />Qualification: PG degree in the concern field.<br />Age Limit: 35 Years</p>

<p>2. Junior Scientist – 07<br />Qualification: M.Sc. in Microbiology / Clinical Microbiology / Biotechnology/ Bioinformatics/ Biochemistry/Bacteriology/Pharmacology/ Serology / Molecular Biology/Physiology from any recognized University with at least 60% marks.<br />Age Limit: 30 Years</p>

<p>How to Apply: Duly filled-in applications in prescribed application format along with copies of required documents should be reach to: Administrative Officer, National Institute of Biologicals (Ministry of Health &amp; Family Welfare), A-32, Sector-62, Institutional Area, Noida-201309. Click here to obtain application form.</p>

<p>The Last Date to apply to NIB Job is 01 July 2015.</p>

<p>Click here to view details http://nib.gov.in/Advt%20%20%2824.04.2015%29.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41675/gapfinisher-a-reliable-gap-filling-pipeline-for-sspace-longread-scaffolder-output</guid>
	<pubDate>Thu, 14 May 2020 15:13:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41675/gapfinisher-a-reliable-gap-filling-pipeline-for-sspace-longread-scaffolder-output</link>
	<title><![CDATA[gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output]]></title>
	<description><![CDATA[<p>gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines.</p>
<p>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/</p><p>Address of the bookmark: <a href="https://github.com/kammoji/gapFinisher" rel="nofollow">https://github.com/kammoji/gapFinisher</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22429/walk-ins-for-jrf-ans-srf-post-in-nirrh-mumbai</guid>
  <pubDate>Thu, 28 May 2015 19:04:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-ins for JRF ans SRF post in NIRRH, Mumbai]]></title>
  <description><![CDATA[
<p>Title of project- "EXPLORING THE HINGE AND TRANSMEMBRANE REGION OF HUMAN FSHR FOR DESIGN OF SMALL MOLECULE AND PEPTIDOMIMETIC MODULATORS"<br />Name of the Post- Junior Research Fellow<br />No. of vacancy- One<br />Stipend- Rs. 25000/ +30% HRA<br />Essential qualification- Candidate should be Post Graduate Degree in Life Sciences / Bioinformatics /Pharmacology/ Chemistry or any other relevant area of Biology or Graduate Degree in Professional Course with NET qualification or Post Graduate Degree in Professional Course.<br />Desirable- Candidate with Good knowledge of protein structures, docking, MD simulations will be preferred.<br />Age Limit- Not exceeding 28 Years<br />Duration of project- Upto May 2018</p>

<p>Title of project- "Analysis of the structures of known antimicrobial peptides using machine learning algorithms and molecular dynamics simulations".<br />Name of the Post- Senior Research Fellow<br />No. of vacancy- One<br />Stipend- Rs. 14000/ +30% HRA<br />Essential qualification- Candidate should be having M.Sc. degree in Life Sciences / Bioinformatics / Pharmacology/ Chemistry or any other relevant area of Biology and 2 years of research experience.<br />Desirable- Candidate with Good knowledge of protein structures, docking, MD simulations will be preferred.<br />Age Limit- Not exceeding 35 Years<br />Duration of project- Upto April 2016<br />How to Apply- Interested candidates can download the application form from below mentioned link- http://www.nirrh.res.in/links/BiodataForm.pdf<br />Candidate must bring the filled up application form along with all the relevant documents in original and one set of attested photocopies of the same and one passport size recent colour photograph.</p>

<p>Ref. - http://www.nirrh.res.in/links/job_jrf-srf.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42132/squeezemeta-a-fully-automated-metagenomics-pipeline-from-reads-to-bins</guid>
	<pubDate>Mon, 17 Aug 2020 05:25:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42132/squeezemeta-a-fully-automated-metagenomics-pipeline-from-reads-to-bins</link>
	<title><![CDATA[SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins]]></title>
	<description><![CDATA[<p>SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta features several unique characteristics:</p>
<ol>
<li>Co-assembly procedure with read mapping for estimation of the abundances of genes in each metagenome</li>
<li>Co-assembly of a large number of metagenomes via merging of individual metagenomes</li>
<li>Includes binning and bin checking, for retrieving individual genomes</li>
<li>The results are stored in a database, where they can be easily exported and shared, and can be inspected anywhere using a web interface.</li>
<li>Internal checks for the assembly and binning steps inform about the consistency of contigs and bins, allowing to spot potential chimeras.</li>
<li>Metatranscriptomic support via mapping of cDNA reads against reference metagenomes</li>
</ol><p>Address of the bookmark: <a href="https://github.com/jtamames/SqueezeMeta" rel="nofollow">https://github.com/jtamames/SqueezeMeta</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22286/jrf-bioinformatics-pune-university</guid>
  <pubDate>Wed, 06 May 2015 06:21:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics @ Pune University]]></title>
  <description><![CDATA[
<p>Pune University is inviting applications from indian citizens for recruiting following posts:</p>

<p>Vacancies:<br />Junior Research Fellow-04<br />Age Limits:<br />Candidates age should be not more than 28 years.<br />Qualification:<br />Candidates should possess M.Sc in Microbiology/ Marine microbiology/Marine Biotechnology/ Bioinformatics/Zoology or equivalent degree with minimum 60% marks.<br />Selection Process:<br />Shortlisted candidates will be called for interview.<br />How to Apply:<br />Eligible candidates may send their applications in the prescribed format along with CV in an envelope should be superscribed as the "Application for the post of JRF" to Head Department of Zoology, Savitribai Phule Pune University on or before 10-05-2015.<br />Last Date:<br />10-05-2015</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43353/judi-just-do-it</guid>
	<pubDate>Mon, 06 Sep 2021 02:44:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43353/judi-just-do-it</link>
	<title><![CDATA[JUDI: Just Do It]]></title>
	<description><![CDATA[<p><em>judi</em><span>&nbsp;comes from the idea of bringing the power and efficiency of&nbsp;</span><em>doit</em><span>&nbsp;to execute any kind of task under many combinations of parameter settings.</span></p>
<p><span>https://github.com/ncbi/JUDI</span></p><p>Address of the bookmark: <a href="https://github.com/ncbi/JUDI" rel="nofollow">https://github.com/ncbi/JUDI</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/22352/affy-has-acquired-eureka-genomics-for-15m</guid>
	<pubDate>Wed, 20 May 2015 15:11:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/22352/affy-has-acquired-eureka-genomics-for-15m</link>
	<title><![CDATA[Affy has acquired Eureka Genomics for 15M $]]></title>
	<description><![CDATA[<p>Affymetrix Acquires Assets Of Eureka Genomics Corporation To Provide High Throughput And Economical Crop And Animal Genotyping</p><p>http://www.thestreet.com/story/13151062/1/affymetrix-acquires-assets-of-eureka-genomics-corporation-to-provide-high-throughput-and-economical-crop-and-animal-genotyping.html</p>]]></description>
	<dc:creator>Martin Jones</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44597/imagine-in-silico-metagenomics-pipeline</guid>
	<pubDate>Sat, 06 Jul 2024 04:32:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44597/imagine-in-silico-metagenomics-pipeline</link>
	<title><![CDATA[iMAGine - in silico MetAGenomics pipeline]]></title>
	<description><![CDATA[<p dir="auto"><span>iMAGine</span>&nbsp;is a metagenomic workflow which includes filtering, assembling, and binning.</p>
<p dir="auto">This workflow includes the following tools which are needed to be installed in the system.</p>
<ol dir="auto">
<li><a href="https://github.com/OpenGene/fastp">fastp</a></li>
<li><a href="https://github.com/ablab/spades">spades assembler</a></li>
<li><a href="https://github.com/ablab/quast">QUAST</a></li>
<li><a href="https://github.com/lh3/bwa">bwa</a></li>
<li><a href="https://github.com/samtools/samtools">samtools</a></li>
<li><a href="https://bitbucket.org/berkeleylab/metabat/src/master/">metabat2</a></li>
<li><a href="https://github.com/Ecogenomics/CheckM">CheckM</a></li>
</ol><p>Address of the bookmark: <a href="https://github.com/avishekdutta14/iMAGine" rel="nofollow">https://github.com/avishekdutta14/iMAGine</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
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