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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30168?offset=620</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33976/goldgenomes-online-database</guid>
	<pubDate>Wed, 26 Jul 2017 07:49:29 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33976/goldgenomes-online-database</link>
	<title><![CDATA[GOLD:Genomes Online Database]]></title>
	<description><![CDATA[<p><span>GOLD</span><span>:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.</span></p>
<p>https://gold.jgi.doe.gov/</p><p>Address of the bookmark: <a href="https://gold.jgi.doe.gov/" rel="nofollow">https://gold.jgi.doe.gov/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/5187/bioinformatics-algorithms-part-1-with-pavel-pevzner-phillip-e-c-compeau</guid>
	<pubDate>Mon, 30 Sep 2013 11:34:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/5187/bioinformatics-algorithms-part-1-with-pavel-pevzner-phillip-e-c-compeau</link>
	<title><![CDATA[Bioinformatics Algorithms (Part 1)  with Pavel  Pevzner, Phillip E. C. Compeau,]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/t5t_nfzdzEg" frameborder="0" allowfullscreen></iframe><p>The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.</p>]]></description>
	
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43714/hiv-genome-database</guid>
	<pubDate>Fri, 21 Jan 2022 05:40:15 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43714/hiv-genome-database</link>
	<title><![CDATA[HIV genome database !]]></title>
	<description><![CDATA[<p>HIV resources</p>
<p>https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html</p><p>Address of the bookmark: <a href="https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html" rel="nofollow">https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/5255/walk-in-interview-indian-agricultural-statistics-research-institute</guid>
  <pubDate>Wed, 02 Oct 2013 15:40:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-in-Interview @ Indian Agricultural Statistics Research Institute]]></title>
  <description><![CDATA[
<p>Indian Agricultural Statistics Research Institute<br />Library Avenue, Pusa, New Delhi – 110012</p>

<p>Walk-in-Interview</p>

<p>Walk-in-interview will be held on October 5, 2013 at 10:00 A.M. at IASRI, New Delhi for a project “A New Distributed Computing Framework for Data Mining” funded by Department of Electronics and Information Technology, Government of India for the following posts. The appointment will be on contractual basis upto 14th October, 2015 or till the termination of the project whichever is earlier and the incumbent shall not have any claim for regular appointment under ICAR.</p>

<p>Research Associate</p>

<p>    Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application or equivalent or</p>

<p>    Post-Graduation in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application or equivalent with 1st Division and at least two years of research experience</p>

<p>     Knowledge of Statistical Analysis /Bioinformatics tools for computational genomics.</p>

<p>     Knowledge of R/Perl programming language</p>

<p>Research Associate</p>

<p>    Ph.D. in Computer Science/ Computer Application / Bioinformatics/ Agricultural<br />    Statistics/ Statistics or equivalent or</p>

<p>    Post-Graduation in Computer Science/ Computer Application /Bioinformatics/ Agricultural Statistics/ Statistics or equivalent with 1st Division and at least two years of research experience</p>

<p>     Expertise in Java programming.<br />     Knowledge of system administration and networking under Linux environment.<br />     Knowledge of parallel programming and cluster computing.</p>

<p>Emoluments for Research Associate: Consolidated Rs:24000/- per month + HRA (for Ph.D. Degree holders) and Rs:23000/- per month + HRA (for Master’s Degree holders)</p>

<p>Age Limit: Age should be not more than 40 years (5 years relaxation for  SC/ST/women candidates and 3 years for OBC candidates as on date of interview).</p>

<p>Interested candidates are requested to appear for Walk-in-Interview on the date and time as specified above in Room No. 106, Training Cum Administrative Block of the Institute along with their application giving bio-data with attested copies of certificates, degrees, testimonials, etc. and one passport size photograph.</p>

<p>Original certificates/ Degrees are needed to be produced at the time of interview.</p>

<p>No T.A. /D.A. will be paid for appearing in the interview.</p>

<p>Advertisement: http://www.iasri.res.in/employment/employment.htm</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/39826/data-scientist-mwd</guid>
  <pubDate>Wed, 07 Aug 2019 03:19:46 -0500</pubDate>
  <link></link>
  <title><![CDATA[Data Scientist (m/w/d)]]></title>
  <description><![CDATA[
<p>https://uk-erlangen.concludis.de/prj/shw/b8b26f24186191c7af8a25e2cc6115ca_0/27008/Data_Scientist_m_w_d.htm?b=0</p>

<p>Deadline: 30.09.2019</p>

<p>Requirement:<br />Microsoft SQL Server: Administration, Transact-SQL<br />Machine Learning<br />Know Deutsch und Englisch langauge</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5422/shendure-lab</guid>
  <pubDate>Wed, 09 Oct 2013 14:21:58 -0500</pubDate>
  <link></link>
  <title><![CDATA[Shendure Lab]]></title>
  <description><![CDATA[
<p>The Shendure Lab is part of the Department of Genome Sciences at the University of Washington (Seattle, WA). The mission of the lab is to develop and apply new technologies in genomics and molecular biology. Most projects in the lab exploit new DNA sequencing technologies (Shendure et al., Nature Reviews Genetics 2004; Shendure &amp; Ji, Nature Biotechnology 2008; Shendure &amp; Lieberman Aiden, Nature Biotechnology 2012), and generally fall into one of six areas: 1) next-generation human genetics; 2) genome contiguity &amp; completeness; 3) massively parallel functional analysis; 4) molecular tagging; 5) synthetic biology; 6) translational genomics. Our interests in each of these areas are outlined briefly below, and a full list of publications is available via PubMed. http://www.ncbi.nlm.nih.gov/pubmed?cmd=search&amp;term=shendure<br />More http://krishna.gs.washington.edu/research.html</p>

<p>Lab page @ http://krishna.gs.washington.edu/index.html</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39865/blast-nr-version-5-database-nr-v5</guid>
	<pubDate>Fri, 23 Aug 2019 11:35:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39865/blast-nr-version-5-database-nr-v5</link>
	<title><![CDATA[BLAST nr version 5 database, (nr_v5)]]></title>
	<description><![CDATA[<p>NCBI have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the nr_v5 database used by webBLAST, which is also available for&nbsp;BLAST+ users.</p><p><span style="text-decoration: underline;"></span></p><p>The changes in nr preserve the taxonomic diversity of the entries in the database while reducing the number of titles for identical sequences. GenPept accessions are still accessible via&nbsp;<a href="http://www.ncbi.nlm.nih.gov/protein/$GENBANK_ACCESSION" target="_blank">www.ncbi.nlm.nih.gov/protein/$GENBANK_ACCESSION</a>&nbsp;or the IPG website&nbsp;<a href="https://www.ncbi.nlm.nih.gov/ipg/" target="_blank">https://www.ncbi.nlm.nih.gov/ipg/</a>.<span style="text-decoration: underline;"></span><span style="text-decoration: underline;"></span></p><p>The "Identical Proteins" link in the alignments section of the webBLAST results takes you to a full list of all accessions associated with a sequence.</p><p><span style="text-decoration: underline;"></span></p><p>For&nbsp;BLAST+ users downloading nr_v5: the database is now approximately 50% smaller, resulting in faster downloads and&nbsp;BLAST&nbsp;searches, and smaller disk space requirements. The database is downloadable at: &nbsp;<a href="ftp://ftp.ncbi.nlm.nih.gov/blast/db/v5/" target="_blank">ftp://ftp.ncbi.nlm.nih.gov/blast/db/v5/</a></p><p><span style="text-decoration: underline;"></span></p><p>For&nbsp;BLAST+ there is a cleanup script to help you manage the transition to this smaller database. The script removes unused database volumes:&nbsp;<a href="ftp://ftp.ncbi.nlm.nih.gov/blast/temp/cleanup-blastdb-volumes.py" target="_blank">ftp://ftp.ncbi.nlm.nih.gov/blast/temp/cleanup-blastdb-volumes.py</a></p><p><span style="text-decoration: underline;"></span></p><p>Here are the new rules on how we keep titles in nr_v5:</p><p><span style="text-decoration: underline;"></span></p><p>1.&nbsp;&nbsp;&nbsp; We keep all refseq, swissprot, pir and PDB titles.<span style="text-decoration: underline;"></span><span style="text-decoration: underline;"></span></p><p>2.&nbsp; &nbsp;&nbsp;We keep any GenPept titles with a TAXID that has not already been seen in the record.<span style="text-decoration: underline;"></span><span style="text-decoration: underline;"></span></p><p>3.&nbsp; &nbsp;&nbsp;We keep at least five GenPept titles regardless of whether the TAXIDS have been seen before or not in this record.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5661/shankar-lab</guid>
  <pubDate>Wed, 16 Oct 2013 07:02:22 -0500</pubDate>
  <link></link>
  <title><![CDATA[Shankar Lab]]></title>
  <description><![CDATA[
<p>Research Interest:</p>

<p>(A) Regulatory System Analysis with respect to microRNAs</p>

<p>(B) Computational Epigenomics &amp; Regulomics:</p>

<p>(C) Computational issues with Next Generation Sequencing:</p>

<p>Department of Biotechnology, <br />Institute of Himalyan Bioresources Technology<br />CSIR, Palampur(Himachal Pradesh), India.<br />Email: ravishihbt.res.in; ravish9gmail.com</p>

<p>More @ http://scbb.ihbt.res.in/SCBB_dept/Lab_Member.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/43011/deg-50-a-database-of-essential-genes-in-both-prokaryotes-and-eukaryotes</guid>
	<pubDate>Tue, 30 Mar 2021 11:47:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/43011/deg-50-a-database-of-essential-genes-in-both-prokaryotes-and-eukaryotes</link>
	<title><![CDATA[DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes]]></title>
	<description><![CDATA[<p><span>Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a key role in the emerging field, synthetic biology. </span></p>
<p><span></span><span>DEG is freely available at the website&nbsp;</span><a href="http://tubic.tju.edu.cn/deg" target="_blank">http://tubic.tju.edu.cn/deg</a><span>&nbsp;or&nbsp;</span><a href="http://www.essentialgene.org/" target="_blank">http://www.essentialgene.org</a><span>.</span></p><p>Address of the bookmark: <a href="http://www.essentialgene.org/" rel="nofollow">http://www.essentialgene.org/</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5747/dbbrowser-attwood-lab</guid>
  <pubDate>Fri, 18 Oct 2013 10:48:19 -0500</pubDate>
  <link></link>
  <title><![CDATA[DbBrowser: Attwood Lab]]></title>
  <description><![CDATA[
<p>DbBrowser: Attwood Lab research concerns protein sequence analysis, primarily using the method of protein 'fingerprinting'. DbBrowser: Attwood Lab maintain a diagnostic fingerprint database (PRINTS), one of the founding partner of InterPro. We also design software to display sequence and structural data in visually-striking ways (e.g., Ambrosia, CINEMA); DbBrowser: Attwood Lab are building re-usable software components to create semantically integrated bioinformatics applications through UTOPIA, including a 'smart' PDF reader that links bioinformatics databases and tools directly with scientific articles (Utopia Documents); and have developed a number of tools for automatic annotation and text mining (e.g., MINOTAUR, PRECIS, METIS). </p>

<p>More @ http://www.bioinf.manchester.ac.uk/dbbrowser/index.php</p>
]]></description>
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