BOL: Related items

Qualimap2: Evaluating next generation sequencing alignment data

Jit — Tue, 11 Sep 2018 04:44:29 -0500

Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

Supported types of experiments include:

Whole-genome sequencing
Whole-exome sequencing
RNA-seq (speical mode available)
ChIP-seq

Address of the bookmark: http://qualimap.bioinfo.cipf.es/

RA Bioinformatics at CIBA

Mon, 02 Feb 2015 22:52:50 -0600

The following posts are to be filled purely on temporary basis under CIBA Component of “Centre for Agricultural Bioinformatics (CABin)” project at this Institute.

Research Associate – one post

Date & Time of Interview 18th Feb 2015 at 10.00 a.m.

Essential Qualification Ph.d / M.Sc./ M.Phil (Bioinformatics) With 1st division or 60% marks or equivalent overall grade point average with at least two years of research experience in the relevant subject.

Desirable qualification: Experience in Java/ C++/ PHP/ PERL/ Python etc. based application development using Linux, Apache and MySQL/Oracle.

Emoluments Rs.24000/- p.m. + 30% HRA for Ph.D holders / Rs.23000/- p.m. + 30% HRA for Master Degree holders A consolidated pay Rs.25000/- per month.

Age Limit Maximum 40 years for men and 45 years for women as on date of interview. Age limits are relaxable for SC / ST / OBC candidates as per rules. Maximum 40 years for men and 45 years for women as on date of interview. Age limits are relaxable for SC / ST / OBC candidates as per rules.

Eligible Candidates may appear for the Walk-in-interview with original Certificate of Ph.D. / Master’s / relevant degree, passport size photograph and bio-data enclosing attested copies of educational qualification & experience certificates. TA / DA will not be paid for attending the interview.

Advertisement: www.ciba.res.in/attachments/jobs/CABin-3006.pdf

Flye: Fast and accurate de novo assembler for single molecule sequencing reads

BioJoker — Tue, 02 Apr 2019 21:54:55 -0500

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and outputs polished contigs. Flye also includes a special mode for metagenome assembly.

Address of the bookmark: https://github.com/fenderglass/Flye

JRF in Bioinformatics @ Tezpur University

Mon, 02 Feb 2015 22:50:14 -0600

Applications are invited for one temporary position of Junior Research Fellow (JRF) in the DBT Twinning Project entitled ‘In-Silico design and evaluation of sequences for γD crystalline protein’ under the Principal Investigator Dr. Anupam Nath Jha, Assistant Professor, Department of Molecular Biology and Biotechnology, Tezpur University.

Educational Qualification: Candidate must possess a M.Sc. in Bioinformatics/ Biotechnology/ Computer Science/ Physics/ Chemistry or B.Tech. or M.Tech. in Bioinformatics/ Biotechnology/ Computer Science from a recognized University/ Institute with minimum 60% marks or equivalent CGPA for general category and for SC/ST/OBC relaxation will be given as per Govt. of India rules.

Fellowship: Rs 16,000/- (Rupees sixteen thousand) only + 10% HRA per month for NET/GATE/BET/BINC qualified candidates. Rs. 12,000/- (Rupees twelve thousand) only + 10% HRA per month for other candidates.

Duration: Initially for a period of six (06) months which may be extended depending upon status of the project or until further order, whichever is earlier.

Age: Candidate should not be more than 28 years of age on the date of interview. Upper age limit may be relaxed up to 5 years in the case of candidate belonging to SC/ ST /OBC /Women / Physically Challenged.

Interested candidates may send their application on plain paper by post along with his/her educational qualifications, recent passport/stamp size photograph and contact phone number to Dr. Anupam Nath Jha, Principal Investigator, Department of Molecular Biology and Biotechnology, Tezpur University, Napaam – 784028 or mail it to anjha@tezu.ernet.in within 20 days of publication of this advertisement.

Only shortlisted candidates will be informed by e-mail or phone for an interview. N.B. No TA/DA will be paid for attending the interview. For further details contact: Dr. Anupam Nath Jha, Assistant Professor, Principal Investigator Department of Molecular Biology & Biotechnology Tezpur University, Napaam, Tezpur-784028 (Assam)

Advertisement: www.tezu.ernet.in/ProjectWalkin/Advt-ANJ-5323-A.pdf

Understanding your reads and mapping !

Neel — Wed, 29 Jan 2020 06:29:55 -0600

One of the best tutorial for beginners ...

https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html

Address of the bookmark: https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html