BOL: Related items

Data Steward / Research & Development Specialist at at the Luxembourg Centre for Systems Biomedicine (LCSB)

Sun, 25 Oct 2020 22:36:38 -0500

Applications should be addressed online to: Prof. Dr. Reinhard Schneider, Head of the Bioinformatics Core Facility

For further information, please contact: Dr. Pinar Alper (pinar.alper@uni.lu)

Applications should be submitted online and include:

A detailed curriculum vitae
Cover letter mentioning the reference number
List of publications/software projects
Description of past experience and future interests
Names and addresses of three referees
Early application is highly encouraged, as the applications will be processed upon reception. Please apply ONLINE formally through the HR system. Applications by email will not be considered.

*gn=gender neutral.

More at https://recruitment.uni.lu/en/details.html?nPostingId=54616&nPostingTargetId=74219&id=QMUFK026203F3VBQB7V7VV4S8&LG=UK&mask=karriereseiten&sType=Social%20Recruiting

Postdoctoral Researcher in Statistical Bioinformatics at Örebro University

Wed, 26 Aug 2020 10:20:11 -0500

The position is in Medical Sciences, with special focus on Statistical Bioinformatics.

The position is a full-time position for a fixed term of two years. The salary depends on the successful candidate’s qualifications and experience.

For more information, please contact Prof. Dirk Repsilber,This is an email address, Prof. Hugo Hesser, This is an email addressor Prof. Allan Sirsjö, allan.This is an email address, or Prof. Robert Brummer,This is an email address.

Örebro University actively pursues an equal work environment and values the qualities that diversity adds to our operations.

More detail at https://www.oru.se/english/working-at-orebro-university/jobs-and-vacancies/job/?jid=20200286/

ICMR Scientist Jobs For Biotech/Life Science/Biology & Bioinformatics

Tue, 10 Nov 2020 18:45:49 -0600

CMR welcomes on-line applications up to 5th December 2020 till 5:30 PM to fill out the vacancies of 42 Scientist’ E’ (Medical), 01 Scientist ‘E’ (Non-Medical), 16 Scientist ‘D’ (Medical) and also 06 Scientist ‘D’ (Non-Medical) from Indian Citizens for appointment on regular basis under Direct Recruitment with all India transfer liability under the Council.

Post I

Name of the Post: Scientist-E (Non-Medical)

Number of positions: One

Upper Age limit: 50 years

Post II

Name of the Post: Scientist-D (Non-Medical)

Number of positions: Six

Upper Age limit: 45 years

Fee:

Application Fee of Rs. 1500/- (Rupees one thousand five hundred only) is needed. SC / ST / Women/ PWD/ EWS applicants are exempted from application fee. Application Fee is to be paid by candidates through online web link given up the application. Application fees when paid will certainly not be reimbursed under any situations.

How to apply:

i) Candidates should apply online on https://recruit.icmr.org.in. A separate application needs to be submitted for every post, with the required application fee.

ii) Following self-attested documents are required to be uploaded together with the application:
a) Proof of Date of Birth.
b) Educational qualifications.
c) Experience.

More at https://recruit.icmr.org.in/assets/uploads/advertisement/ICMR_Advertisement_06112020.pdf

Galaxy Training Resources !

Jit — Sun, 27 Dec 2020 05:28:07 -0600

Welcome to Galaxy Training!

Collection of tutorials developed and maintained by the worldwide Galaxy community

Topic	Tutorials
Introduction to Galaxy Analyses	10
Assembly	6
Climate	3
Computational chemistry	6
Ecology	6
Epigenetics	6
Genome Annotation	3
Imaging	3
Metabolomics	4
Metagenomics	7
Proteomics	18
Sequence analysis	2
Statistics and machine learning	8
Transcriptomics	23
Variant Analysis	8
Visualisation	2

Address of the bookmark: https://training.galaxyproject.org/training-material/

Scientist position in Structural Bioinformatics at Lonza

Wed, 03 Feb 2021 21:38:06 -0600

Lonza (https://www.lonza.com/) are seeking a highly motivated and skilled (Senior) Scientist with experience in Structure-based Protein Engineering and Bioinformatics to join Lonza's Applied Protein Services (APS) Bioinformatics team based in Cambridge, UK.

More at https://instruct-eric.eu/jobs/scientist-position-in-structural-bioinformatics-at-lonza-cambridge-uk/

Bioinformatics in Africa: Part6 - Sudan

BioStar — Sat, 06 Feb 2021 21:20:59 -0600

Commission for Biotechnology & Genetic Engineering Khartoum: The Commission for Biotechnology and Genetic Engineering was established in 9/2/1993 as research unit. In addition to research activities it acts as focal point for the International Center for Biotechnology and Genetic Engineering. The commission conducts researches in order to play a part in solving economical, environmental, health and nutritional problems using modern research techniques with an emphasis on the applied researches in these areas. The laboratories were well furnished with the essential equipments and the catalyst infrastructure to facilitate emergence of a successful for research. The Commission equipped with a computer center and information to serve as informatics and Digital library.

Research Interest and Activities: 1. Plant Genetic Transformations
2. Molecular Population Genetics 3. Detection of human and Animals diseases 4. Breast Cancerspecific protein marker 5. Phytochemical 6. Genomic map 7. Bioremediation 8. Tissue Culture.

Web site and links: www.geocity.cbge.com

Bioinformatics Research Scientist @ Oklahoma State University (OSU)

Tue, 17 Aug 2021 13:24:39 -0500

This position is an early career research scientist in the area of Bioinformatics to support research projects involving faculty and staff, at Oklahoma State University (OSU). This is a highly technical position that requires a strong research background in biomedical or life sciences, including a high level of expertise with bioinformatics algorithms, databases, and analyses with a focus on next-generation sequence data. Although most of the projects will deal directly with the analysis of DNA and RNA sequence data the individual should be well versed in other types of data sources as well (i.e., microarrays) and handling of large datasets (using data analytics, machine learning, and deep learning techniques).

More at https://okstate.csod.com/ats/careersite/JobDetails.aspx?site=8&id=9874

Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.

Jit — Wed, 20 Dec 2017 18:59:42 -0600

Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an explicit error correction step which we argue to be redundant with the assembly process. Meraculous achieves high performance with large datasets by utilizing lightweight data structures and multi-threaded parallelization, allowing to assemble human-sized genomes on commodity clusters in under a day. The process pipeline implements a highly transparent and portable model of job control and monitoring where different assembly stages can be executed and re-executed separately or in unison on a wide variety of architectures.

https://jgi.doe.gov/data-and-tools/meraculous/

https://arxiv.org/ftp/arxiv/papers/1703/1703.09852.pdf

Address of the bookmark: https://sourceforge.net/projects/meraculous20/

Getting Started with Nextflow

LEGE — Sat, 18 Sep 2021 01:28:41 -0500

Introduction to Bioinformatics workflows with Nextflow and nf-core

Getting Started with Nextflow

Objectives Understand

What a workflow management system is.

Understand the benefits of using a workflow management system.

Explain the benefits of using Nextflow as part of your bioinformatics workflow.

Explain the components of a Nextflow script.

Run a Nextflow script.

Introduction to Bioinformatics workflows with Nextflow and nf-core

Getting Started with Nextflow

Address of the bookmark: https://carpentries-incubator.github.io/workflows-nextflow/aio/index.html

Flye: Fast and accurate de novo assembler for single molecule sequencing reads

Jit — Fri, 04 May 2018 19:16:22 -0500

Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structural accuracy of the resulting sequence. The package also includes a polisher module, which produces the final assembly of high nucleotide-level quality.

Address of the bookmark: https://github.com/fenderglass/Flye