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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30234?offset=350</link>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27549/ra-at-university-of-hyderabad</guid>
  <pubDate>Sun, 29 May 2016 11:50:37 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA at UNIVERSITY OF HYDERABAD]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF HYDERABAD</p>

<p>School of Life Sciences</p>

<p>Department of Animal Biology</p>

<p>Applications are invited on a plane paper (along with copies of educational qualifications and experience) from eligible candidates for the selection of following position to work under a collaborative research project entitled “Development and application of high resolution genome conformation capture technology to investigate genome architecture in space and time” between University of Hyderabad and CR Rao advanced Institute of Mathematics, Statistics and Computer Sciences, sponsored by Department of Biotechnology, Government of India, New Delhi</p>

<p>Name and No. of positions JRF‐ONE</p>

<p>Emoluments for the position Rs. 25,000/p.m. + Eligible HRA</p>

<p>Qualifications MSc or M.Tech in any branch of biology/bioinformatics/computational biology/computer sciences/Mathematics/Physics</p>

<p>Duration Appointments are made initially for ONE year and can be extended further TWO years or until the duration of project</p>

<p>Our laboratory is interested in understanding signalling and spatiotemporal dynamics of 3‐Dimensional genome architecture and gene expression during embryonic stem cell differentiation by utilizing a combination of cellular, molecular genetics, Biochemical and computational tools in combination with next generation sequencing based chromatin structure analysing methods. Successful candidates shall pursue project related to either experimental or computational analysis of genome and Epigenomics data derived from human and mouse cells. Experience in Computational biology, bioinformatics, statistics, machine learning and algorithmic development is required. Knowledge of programming languages (e.g. C, C++, Perl, Python, Ruby etc.) and statistical framework (e.g. R, matlab, etc.) is preferable. Basic understanding of molecular biology will be an added advantage.</p>

<p>Interested candidates with the above mentioned qualification can send their curriculum vitae to   Dr. K. Sreenivasulu, Department of Animal Biology, School of Life Sciences, South campus, University of Hyderabad or via email at positionssklab@gmail.com or svksl@uohyd.ernet.in.</p>

<p>Candidates with CSIR/UGC/ICMR/DBT/BINC qualifications if interested in above mentioned area of research are welcomed to approch principal investigator for a position leading to PhD. Last date for submission of applications is 17/06/2016. Eligible candidates will be called for an interview and they should carry all original certificates of the qualifying exam. No TA/ DA will be paid for attending the interview or at the time of joining the post.</p>

<p>Advertisement: http://www.uohyd.ac.in/images/recruitment/jrf_260516.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</guid>
	<pubDate>Fri, 03 Jun 2016 05:06:20 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27691/histonedb-20-%E2%80%93-with-variants</link>
	<title><![CDATA[HistoneDB 2.0 – with variants]]></title>
	<description><![CDATA[<p><span>This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To get started, select a histone type to explore its variants.</span></p>
<p><span>More at&nbsp;http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</span></p><p>Address of the bookmark: <a href="http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/" rel="nofollow">http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0/index.fcgi/browse/</a></p>]]></description>
	<dc:creator>Anjana</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27713/mutabind</guid>
	<pubDate>Mon, 06 Jun 2016 13:34:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27713/mutabind</link>
	<title><![CDATA[MutaBind]]></title>
	<description><![CDATA[<p><span>MutaBind is a new computational method and server created through NCBI research efforts that maps mutations on a protein structural complex, calculates changes in binding affinity, identifies deleterious mutations and produces a downloadable mutant structural model.&nbsp;</span><a href="http://www.ncbi.nlm.nih.gov/projects/mutabind/index.fcgi/" target="_blank">http://www.ncbi.nlm.nih.gov/projects/mutabind/index.fcgi/</a></p><p><img src="http://www.ncbi.nlm.nih.gov/projects/mutabind/prj-sunddg/static/myimgs/CirclesDiamondBlueThiner.png" width="471" height="258" alt="image" style="border: 0px;"></p><p><span>MutaBind guides you through this process, step by step, starting with selecting a protein complex and inputting PDB code or uploading PDB files. You can also retrieve results with a job ID number, view help documents, and review the MutaBind method and references.</span></p><p><span>More at&nbsp;http://www.ncbi.nlm.nih.gov/projects/mutabind/index.fcgi/</span></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27841/covcal-coverage-read-count-calculator</guid>
	<pubDate>Wed, 15 Jun 2016 18:08:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27841/covcal-coverage-read-count-calculator</link>
	<title><![CDATA[CovCal: Coverage / Read Count Calculator]]></title>
	<description><![CDATA[<h2>Coverage / Read Count Calculator</h2>
<h4>Calculate how much sequencing you need to hit a target depth of coverage (or vice versa).</h4>
<p><span>Instructions:</span> set the read length/configuration and genome size, then select what you want to calculate.</p>
<p>Written by <a href="http://stephenturner.us/" target="blank">Stephen Turner</a>, based on the <a href="http://www.ncbi.nlm.nih.gov/pubmed/3294162" target="_blank">Lander-Waterman formula</a>, inspired by <a href="http://core-genomics.blogspot.com/2016/05/how-many-reads-to-sequence-genome.html" target="_blank">a similar calculator</a> written by James Hadfield. Coverage is calculated as <em>C=LN/G</em> and reads as <em>N=CG/L</em> where <em>C</em> = Coverage (X),<em>L</em> = Read length (bp), <em>G</em> = Haploid genome size (bp), and <em>N</em> = Number of reads. Source code <a href="https://github.com/stephenturner/covcalc" target="_blank">on GitHub</a>.</p><p>Address of the bookmark: <a href="http://apps.bioconnector.virginia.edu/covcalc/" rel="nofollow">http://apps.bioconnector.virginia.edu/covcalc/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28879/projects-opening-at-nbagr</guid>
  <pubDate>Wed, 24 Aug 2016 04:13:13 -0500</pubDate>
  <link></link>
  <title><![CDATA[Projects opening at NBAGR]]></title>
  <description><![CDATA[
<p>ICAR - NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES</p>

<p>Karnal -132001 (Haryana)</p>

<p>A walk-in-Interview is proposed to be held at National Bureau of Animal Genetic Resources, Karnal (Haryana)-132001 at 10:30 AM on 05.09.2016 for the selection of Three Research Associate &amp; One Young Professional - II as per details given below:</p>

<p>Name of the Scheme / Project: Center for Agricultural Bioinformatics. The post duration is Upto 31.032017 or earlier &amp; Co-terminus with the project.</p>

<p>Research Associate (Three posts)</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential Qualifications: PhD degree in any one of discipline/Subject Biotechnology/ Animal Genetics and Breeding/ Biochemistry/ Bioinformatics/Molecular Genetics OR Master’s degree in any one of above mentioned discipline/Subject with 4 years/5 years of Bachelor’s degree having 1st division or 60% marks or equivalent overall grade point average, with at least two years of research experience as evidenced from Fellowship/Associateship</p>

<p>Desirable Qualifications: Experience in Database/Next Generation Sequencing Data analysis for 02 RA posts or working experience in molecular biology, gene expression data analysis, SNP genotyping and sequence data analysis, functional gene characterization for 01 RA post.</p>

<p>Young Professionals II One position</p>

<p>Date &amp; Time of Interview: 10.30 A.M. on 05.09.2016</p>

<p>Essential: B. Tech or M.Tech. in Bioinformatics / Computer Science / Computer Application.</p>

<p>Desirable: Experience in Linux, MySQL, Java, C++/ PHP/ PERL R based data analysis and application development in Bioinformatics.</p>

<p>More Info : http://14.139.252.116/ADvertisementforCabinScheme.pdf</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27927/research-assistant-bioinformatics-at-andhra-university</guid>
  <pubDate>Sat, 18 Jun 2016 18:39:09 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Assistant Bioinformatics at Andhra University]]></title>
  <description><![CDATA[
<p>Advt. No. AUMLR/BIF/ RA /6-2016 <br />Research Assistant Job Position in Andhra University on temporary basis <br />No. of Post : 01<br />Eligibility : Applicants who have completed their Post Graduate degree in Bioinformatics.<br />Desirable : Undergone traineeship in BIF; at least one publication in Bioinformatics. <br />Stipend : A monthly stipend of Rs. 22,000/- + HRA (HRA is applicable only for NET qualified candidates)<br />How to apply<br />Applications on plain paper, stating the name, address, date of birth, educational qualifications and experiences, and Institute, along with attested photocopies of mark sheets and certificates, should be submitted to K. UMADEVI, Coordinator, BIF Programme, Department of Marine Living Resources, Andhra University, Visakhapatnam-530 003, Andhra Pradesh, on or before 15th July, 2016. </p>

<p>Candidates are required to appear for an interview, with all the necessary certificates in original along with a set of attested copies in the office of the Principal, AU College of Science &amp; Technology, Andhra University, Visakhapatnam. Applications may be sent by Email to andhrauniv.btisnet@nic.in / katruumadevi@gmail.com.</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28272/bioinformatics-openings-at-icgeb-new-delhi-india</guid>
  <pubDate>Mon, 04 Jul 2016 01:04:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics openings at ICGEB NEW DELHI, INDIA]]></title>
  <description><![CDATA[
<p>Applications are invited for:</p>

<p>ICGEB NEW DELHI, INDIA</p>

<p>Biotechnology research positions</p>

<p>Projects include:</p>

<p>a) protein structure determination<br />b) malaria parasite biology<br />c) genomics and metagenomics<br />d) molecular and cellular biology<br />e) bioinformatics and computational biology</p>

<p>Minimum eligibility for students who have already obtained a MSc:</p>

<p>1) INSPIRE award for PhD<br />2) SPM award for PhD<br />3) CSIR/DBT/DST JRF for PhD</p>

<p>Applicants should submit their curriculum vitae by email to: sb.icgeb@gmail.com by 30 August 2016</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28449/aravind-j-shankar-gets-all-india-rank-1-in-binc-2016</guid>
	<pubDate>Tue, 19 Jul 2016 05:19:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28449/aravind-j-shankar-gets-all-india-rank-1-in-binc-2016</link>
	<title><![CDATA[Aravind J Shankar gets all India rank 1 in BINC, 2016]]></title>
	<description><![CDATA[<p>Aravind J Shankar, a bioinformatics graduate of SASTRA University, has secured the all India rank 1 in the Bioinformatics National Certification (BINC) 2016, organised by the Department of Biotechnology, Government of India.</p><p>The BINC is a nationwide examination aimed at certifying professionals in bioinformatics and tests their theoretical and practical knowledge across three phases of examination. He is entitled to receive a DBT research fellowship leading to a Ph.D. from any premier research institute in India.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/28563/find-predicted-crispr-sites-using-ensembl</guid>
	<pubDate>Wed, 27 Jul 2016 03:15:59 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/28563/find-predicted-crispr-sites-using-ensembl</link>
	<title><![CDATA[Find predicted CRISPR sites using Ensembl]]></title>
	<description><![CDATA[<p>Did you know that you can now use Ensembl to help design your CRISPR experiments? Just turn on the brand new track that shows you the CRISPR sites that have been predicted by the WGE group (<a href="http://www.sanger.ac.uk/science/tools/wge" target="_blank">http://www.sanger.ac.uk/science/tools/wge</a>)</p><p><img src="http://www.ensembl.info/wp-content/uploads/2016/07/Screen-Shot-2016-07-22-at-13.04.33.png" width="1400" height="544" alt="image" style="border: 0px;"></p><p>Find out more on our blog:<br /><a href="http://www.ensembl.info/blog/2016/07/26/find-predicted-crispr-sites-using-ensembl/" target="_blank">http://www.ensembl.info/&hellip;/find-predicted-crispr-sites-usin&hellip;/</a></p><p>&nbsp;</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/28818/senior-manager-bioinformatics-operations-at-rgcb-india</guid>
  <pubDate>Wed, 17 Aug 2016 03:19:05 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Manager (Bioinformatics Operations) at RGCB, India]]></title>
  <description><![CDATA[
<p>No. RGCB/ADVT/ADMN&amp;TECH/01/2016</p>

<p>August 17, 2016</p>

<p>RGCB invites applications for the following positions from Indian citizens with prescribed qualifications. Full details including job description, additional desirable qualifications, etc. are described below.</p>

<p>Code No. 1</p>

<p>Senior Manager (Bioinformatics Operations)</p>

<p>(To download application format, click here )</p>

<p>Scale of Pay</p>

<p>PB-3 Rs.15600-39100 + Grade Pay Rs.6600/-</p>

<p>Number of Positions</p>

<p>1 (General)</p>

<p>Minimum Qualifications</p>

<p>PhD in Bioinformatics, Biotechnology, Life Sciences or Computer Science applied to biological questions.<br />A minimum of 5 years documented experience in national or state government R&amp;D centers or state and central universities.<br />Track record of research funding and peer reviewed publications.<br />Proficiency using statistical analysis software or libraries such as R or Matlab.<br />Experience with a general scripting language such as Python, Ruby, or Pearl<br />Experience working with Next Generation Sequencing data<br />Proficiency with data visualization tools (Spotfire, Tableau, R, Python, etc.)<br />Experience with an object-oriented language such as Java, C++ or C# and familiarity with standard software development best practices: source code control, unit testing, in-code documentation and automated build environments.<br />Excellent listening, time management, organizational and interpersonal skills<br />Excellent communication skills, including the ability to illustrate problems and generate solutions<br />Management skills – demonstrated through the successful management of a team or large projects.<br />Broad and deep knowledge of computational methods for high-throughput sequence analysis and interpretation.<br />Extensive experience in delivering bioinformatics as a service and conducting training programs.<br />Experience of working with a production, customer-focused environment and business development projects.<br />Experience with management of funding and financial sustainability.<br />Demonstrated ability to work in a team environment and ability to lead and motivate an effective team, and also work as a good team player.<br />Good problem solver, able to logically identify solutions to technical problems.<br />Able to see the bigger picture and contribute towards strategic direction of Platforms and Pipelines teams.<br />Responsibilities</p>

<p>This position will involve cross-functional teamwork to build and develop bioinformatics tools and provide analysis for ongoing clinical trials.<br />Collaborate with biomarker scientists, clinical investigators and pipeline teams to build analytical tools.<br />Implement and evaluate new algorithms for R&amp;D.<br />Support Research and Development teams by analyzing NGS data to identify predictive response markers<br />Lead training programs in Computational Biology and Bioinformatics.</p>

<p>More at http://rgcb.res.in/positions.php</p>
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