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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/30242?offset=1330</link>
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	<description><![CDATA[]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/38745/osprey-network-visualization-system</guid>
	<pubDate>Sun, 20 Jan 2019 05:34:24 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/38745/osprey-network-visualization-system</link>
	<title><![CDATA[Osprey: Network Visualization System]]></title>
	<description><![CDATA[<p>Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from&nbsp;<a href="http://geneontology.org/" title="GENE ONTOLOGY CONSORTIUM">Gene Ontology (GO)</a>&nbsp;annotated interaction data maintained by the&nbsp;<a href="https://thebiogrid.org/" title="The BioGRID">BioGRID</a>.</p>
<p>Osprey is developed by the&nbsp;<a href="http://www.tyerslab.com/">TyersLab</a>&nbsp;and is a part of the&nbsp;<a href="https://thebiogrid.org/" title="The BioGRID">BioGRID</a>&nbsp;family of software. It utilizes both&nbsp;<a href="https://www.mysql.com/" title="MySQL Database">MySQL</a>&nbsp;and&nbsp;<a href="http://openjdk.java.net/" title="OpenJDK">Java</a>&nbsp;to operate and is compatible with&nbsp;<a href="https://www.microsoft.com/en-us/windows/" title="Microsoft Windows">Windows</a>,&nbsp;<a href="http://www.ubuntu.com/">Linux</a>, and&nbsp;<a href="http://www.apple.com/" title="Apple">Apple</a>&nbsp;operating systems.</p>
<p>These works were published in&nbsp;<strong>Breitkreutz, BJ., Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22</strong>&nbsp;<a href="http://genomebiology.com/2003/4/3/R22" title="Genome Biology">[Genome Biology]</a>&nbsp;<a href="http://genomebiology.com/content/pdf/gb-2003-4-3-r22.pdf" title="Osprey PDF">[PDF]</a>&nbsp;<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;list_uids=12620107&amp;dopt=Abstract" title="Pubmed">[PubMed]</a>&nbsp;and supported by the&nbsp;<a href="http://www.nih.gov/" title="NIH">National Institutes of Health</a>,&nbsp;<a href="http://www.cihr-irsc.gc.ca/" title="CIHR">Canadian Institutes of Health Research</a>, and&nbsp;<a href="http://www.genomecanada.ca/en/" title="Genome Canada">Genome Canada</a>.</p><p>Address of the bookmark: <a href="https://osprey.thebiogrid.org/" rel="nofollow">https://osprey.thebiogrid.org/</a></p>]]></description>
	<dc:creator>BioJoker</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/21934/ra-bioinformatics-at-bose-institute</guid>
  <pubDate>Tue, 07 Apr 2015 03:30:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at Bose Institute]]></title>
  <description><![CDATA[
<p>Bose Institute, Kolkata, invites online applications from Indian Citizens for recruitment of Research Associate (05 posts) under Institute Plan Programmes : Improvement of Plants : Biotechnological, Genomic and Proteomic Approaches (programme No. – I), Bioinformatics and Computational Biology (programme No. – III), Microbial Genomics and Infection Biology (programme No. – V) and Basic &amp; Applied Problems in Physical and Environmental Sciences (programme No. – VII). All the posts are tenable for one (01) year.</p>

<p>ESSENTIAL QUALIFICATION: PH.D. DEGREE IN LIFE SCIENCES / PHYSICAL SCIENCE.</p>

<p>Research Associate for Programme No. –I Specialization in the area of plant molecular biology or plant proteomic study or plant pathogen interaction.<br />Research Associate for Programme No. –I Specialization in the area of plant / fungal Biotechnology, tissue culture and molecular biology<br />Research Associate for Programme No. –III Specialization in the area of structural biology and protein crystallography.<br />Research Associate for Programme No. – V Specialization in the area of microbial physiology (metabolism) or environmental microbiology, with experience in microbial genomics and proteomics.<br />Research Associate for Programme No. – VII Specialization in the area of Theoretical High Energy Astrophysics or Astroparticle Physics. Proven record of independent research experience in Astrophysical<br />Radiation Magnetohydrodynamics or Cosmic Ray Astrophysics. Experience in numerical techniques and /or date analysis would be additional advantage.<br />Associateship : 22,000/- p.m., plus admissible H.R.A. and Medical benefit.<br />Age: Below 3 Age : Below 35 years (Relaxable in case of SC/ST/OBC/Women candidates only as per rule).<br />SELECTION PROCEDURE FOR BOSE INSTITUTE- RESEARCH ASSOCIATE POST:</p>

<p>Candidates can apply on or before 13/4/2015.<br />No detailed information about the selection procedure is mentioned in the recruitment notification.<br />HOW TO APPLY FOR RESEARCH ASSOCIATE VACANCY IN BOSE INSTITUTE:</p>

<p>Interested and eligible candidates may read the application procedures and instructions carefully before applying through online as well as submitting the hard copy of the same. Candidates those who has submitted their Ph.D. Thesis and can produce Provisional Ph.D. Certificate at the time of Interview may also apply </p>

<p>Ref<br />Bose Institute Recruitment 2015 –  ADVT. NO. : BI/IF/35/2014-15.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41209/juicebox-visualization-and-analysis-software-for-hi-c-data</guid>
	<pubDate>Fri, 21 Feb 2020 00:33:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41209/juicebox-visualization-and-analysis-software-for-hi-c-data</link>
	<title><![CDATA[Juicebox: Visualization and analysis software for Hi-C data]]></title>
	<description><![CDATA[<p>Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox,&nbsp;<a href="https://github.com/theaidenlab/juicer/wiki/Download">Juicer Tools</a>, and&nbsp;<a href="https://aidenlab.org/assembly/">Assembly Tools</a>.&nbsp;<a href="https://github.com/theaidenlab/juicebox/wiki/Download">Download Juicebox here</a>, or use&nbsp;<a href="https://aidenlab.org/juicebox">Juicebox on the web</a>. Detailed documentation is available&nbsp;<a href="https://github.com/theaidenlab/juicebox/wiki">on the wiki</a>. Instructions below pertain primarily to usage of command line tools and the Juicebox jar files.</p>
<p>Juicebox can now be used to visualize and interactively (re)assemble genomes. Check out the Juicebox Assembly Tools Module website&nbsp;<a href="https://aidenlab.org/assembly">https://aidenlab.org/assembly</a>&nbsp;for more details on how to use Juicebox for assembly.</p>
<p>GUI at&nbsp;<a href="https://aidenlab.org/juicebox/">https://aidenlab.org/juicebox/</a></p><p>Address of the bookmark: <a href="https://github.com/aidenlab/Juicebox" rel="nofollow">https://github.com/aidenlab/Juicebox</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/21982/which-bioinformatics-journals-do-you-follow</guid>
	<pubDate>Fri, 10 Apr 2015 12:10:21 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/21982/which-bioinformatics-journals-do-you-follow</link>
	<title><![CDATA[Which Bioinformatics Journals Do You Follow?]]></title>
	<description><![CDATA[<p><span><span>Which are your favorite bioinformatics journals? The ones that you check every month or so, or that you are subscribed to?</span></span></p>]]></description>
	<dc:creator>Tenzin Paul</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33942/mulan-multiple-sequence-local-alignment-and-conservation-visualization-tool</guid>
	<pubDate>Thu, 20 Jul 2017 08:02:32 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33942/mulan-multiple-sequence-local-alignment-and-conservation-visualization-tool</link>
	<title><![CDATA[Mulan: MUltiple sequence Local AligNment and conservation visualization tool]]></title>
	<description><![CDATA[<p><span>Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It combines&nbsp;</span><a href="http://www.bx.psu.edu/miller_lab/" target="_new"><em>refine</em>&nbsp;and&nbsp;<em>tba</em></a><span>&nbsp;tools to align either "draft" or "finished" quality sequences. Mulan provides a dynamic graphical interface to align and visualize conservation profiles for evolutionarily distant and closely related species.</span><br><span></span></p>
<p><span>Input formats, automated data upload from the&nbsp;</span><a href="http://genome.ucsc.edu/" target="_new">UCSC Genome Browser</a><span>, gene annotation, annotation of repetitive elements, and progress report were previously described in the&nbsp;</span><a href="https://zpicture.dcode.org/zpInstructions.html" target="_zp">zPicture instructions</a><span>&nbsp;and we refer the users to these materials for more details. This introduction is mainly focused on some novel features unique to the Mulan.</span><span><br></span></p><p>Address of the bookmark: <a href="https://mulan.dcode.org/mulanInstructions.php" rel="nofollow">https://mulan.dcode.org/mulanInstructions.php</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22028/walk-in-for-research-asst-programmer-enterovirus-research-centre-mumbai-india</guid>
  <pubDate>Tue, 14 Apr 2015 12:36:51 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk in for Research Asst &amp; Programmer Enterovirus Research Centre Mumbai - India]]></title>
  <description><![CDATA[
<p>Enterovirus Research Centre Mumbai Jobs 2015 –</p>

<p>Walk in for Research Asst &amp; Programmer Posts: Enterovirus Research Centre, Mumbai, Indian Council of Medical Research has issued notification for the recruitment of Research Asst &amp; Programmer vacancies on temporary basis for the project entitled “An Atlas of Non-Polio Enterovirus Types Isolated from Cases of Acute Flaccid Paralysis in India”. Eligible candidates may walk in on 20-04-2015 from 10:00 AM to 12:00 Noon. Other details like age limit, educational qualification, how to apply are given below…</p>

<p>Enterovirus Research Centre Mumbai Vacancy Details:<br />Total No. of Posts: 04<br />Name of the Posts:<br />1. Research Assistant: 03 Posts<br />2. Programmer: 01 Post</p>

<p>Age Limit: Candidates age should below 28 years. Age relaxations are applicable as per rules.</p>

<p>Educational Qualification: Candidates should have M.Sc (1st Class) in Microbiology/ Bioinformatics/ Biotechnology/ Life Science for post 1, BE/ B.Tech/ MCA for post 2.</p>

<p>Selection Process: Candidates are selected based on their performance in interview.</p>

<p>How to Apply: Eligible candidates may attend for interview along with original certificates, CV, attested copies of relevant certificates, one recent passport size photograph duly affixed on right side of application at Enterovirus Research Centre, Mumbai, Indian Council of Medical Research, Haffkine Institute Cmpound, Acharya Donde Marg, Parel, Mumbai-400012 on 20-04-2015 from 10:00 AM to 12:00 Noon.</p>

<p>Important Dates:<br />Date &amp; Time of Interview: 20-04-2015 from 10:00 AM to 12:00 Noon.<br />Registration Time: 12:00 Noon.</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/34920/xmatchview-smith-waterman-alignment-visualization</guid>
	<pubDate>Thu, 28 Dec 2017 09:00:58 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/34920/xmatchview-smith-waterman-alignment-visualization</link>
	<title><![CDATA[xmatchview: smith-waterman alignment visualization]]></title>
	<description><![CDATA[<p><span>xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and xmatchview-conifer are written in python and run on linux and windows. They serve as visual tools for analyzing cross_match alignments. Cross_match (Green, P. (1994)&nbsp;</span><a href="http://www.phrap.org/">http://www.phrap.org</a><span>) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive.</span></p>
<p><span>http://www.bcgsc.ca/platform/bioinfo/software/xmatchview</span></p><p>Address of the bookmark: <a href="https://github.com/warrenlr/xmatchview" rel="nofollow">https://github.com/warrenlr/xmatchview</a></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/22050/binc-sample-question-paper</guid>
	<pubDate>Thu, 16 Apr 2015 09:15:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/22050/binc-sample-question-paper</link>
	<title><![CDATA[BINC Sample Question Paper !!!]]></title>
	<description><![CDATA[<p>BINC sample question paper round THREE ...</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/22050" length="316" type="text/plain" />
</item>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37529/bokeh-an-interactive-visualization-library-that-targets-modern-web-browsers-for-presentation</guid>
	<pubDate>Fri, 10 Aug 2018 18:43:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37529/bokeh-an-interactive-visualization-library-that-targets-modern-web-browsers-for-presentation</link>
	<title><![CDATA[Bokeh: An interactive visualization library that targets modern web browsers for presentation]]></title>
	<description><![CDATA[<p id="about">Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to extend this capability with high-performance interactivity over very large or streaming datasets. Bokeh can help anyone who would like to quickly and easily create interactive plots, dashboards, and data applications.</p>
<p>To get started using Bokeh to make your visualizations, see the&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/user_guide.html#userguide">User Guide</a>.</p>
<p>To see examples of how you might use Bokeh with your own data, check out the&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/gallery.html#gallery">Gallery</a>.</p>
<p>A complete API reference of Bokeh is at&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/reference.html#refguide">Reference Guide</a>.</p>
<p>If you are interested in contributing to Bokeh, or extending the library, see the&nbsp;<a href="https://bokeh.pydata.org/en/latest/docs/dev_guide.html#devguide">Developer Guide</a>.</p><p>Address of the bookmark: <a href="https://bokeh.pydata.org/en/latest/" rel="nofollow">https://bokeh.pydata.org/en/latest/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/22130/senior-research-fellow-srf-bioinformatics-at-central-institute-for-research-on-buffaloes</guid>
  <pubDate>Sat, 18 Apr 2015 04:30:47 -0500</pubDate>
  <link></link>
  <title><![CDATA[Senior Research Fellow (SRF) Bioinformatics at Central Institute for Research on Buffaloes]]></title>
  <description><![CDATA[
<p>Senior Research Fellow (SRF) Bioinformatics at Central Institute for Research on Buffaloes<br />Address: Central Institute for Research on Buffaloes, Sirsa Road, Hisar<br />State: Haryana<br />Pay Scale: Post Graduate in subjects other than Veterinary Science Rs. 16000/- per month for 1st and 2nd year and Rs. 18000/- per month for 3rd year. Post Graduate in Veterinary Science Rs. 18000/- per month for 1st and 2nd Year and Rs. 20000/- per month for 3rd year.<br />Educational Requirements: Master’s degree in biotechnology/animal biotechnology, veterinary/animal biochemistry, veterinary microbiology or veterinary/animal physiology/Nano Technology/Bioinformatics or related area.<br />Qualifications: Ph.D in relevant field/experience of working in any research project<br />Details will be available at: http://www.cirb.res.in/attachments/195_Walk-in-Interview%20for%20Senior%20Research%20Fellow%20%28SRF%29%20%28On%20Dated%2020.4.2015%29.pdf<br />How To Apply: Interested candidates who fulfill the above conditions should report for interview with a copy of their bio-data, photocopy and original certificates and testimonials, other related material i.e. reports, documents, articles, etc., if any.<br />Date &amp; Time of Interview: 20.04.2015 at 11.00 hrs<br />Venue: CIRB, Hisar</p>
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