<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/3031?offset=60 https://bioinformaticsonline.com/bookmarks/view/26322/liftover Mon, 08 Feb 2016 15:45:03 -0600 https://bioinformaticsonline.com/bookmarks/view/26322/liftover <![CDATA[liftover]]> Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly.

More at https://github.com/aaronwolen/liftover

https://www.bioconductor.org/help/workflows/liftOver/

Address of the bookmark: https://github.com/aaronwolen/liftover

]]> Jitendra Narayan https://bioinformaticsonline.com/researchlabs/view/2002/ibl-laboratory Mon, 12 Aug 2013 02:02:29 -0500 <![CDATA[IBL laboratory]]> The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative agents, heavy metals, or drastic changes in nutrients availability. The genome-wide responses studied with the "omics" techniques (transcriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are processed, archived, integrated and represented as working models through bioinformatics and mathematics.

Link : http://www-dsv.cea.fr/en/instituts/institut-de-biologie-et-de-technologies-de-saclay-ibitec-s/unites-de-recherche/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-de-biologie-integrative-lbi/presentation__1

]]> https://bioinformaticsonline.com/researchlabs/view/5623/yau-group Tue, 15 Oct 2013 13:05:15 -0500 <![CDATA[Yau Group]]> Yau Group are a new research group based at the Wellcome Trust Centre for Human Genetics and the Department of Statistics at the University of Oxford.

Yau Group develops statistical and computational methods for the analysis of genomic datasets with a particular interest in cancer sequencing applications and the use of Bayesian Statistics.

Yau Group are currently have projects in somatic mutation analysis of heterogeneous cancers, data fusion or integration techniques and single cell genomics.

More @ http://www.well.ox.ac.uk/~cyau/index.html

]]> https://bioinformaticsonline.com/bookmarks/view/2728/statistics-of-current-sequencing-and-bioinformatics-market Wed, 21 Aug 2013 08:29:21 -0500 https://bioinformaticsonline.com/bookmarks/view/2728/statistics-of-current-sequencing-and-bioinformatics-market <![CDATA[Statistics of current Sequencing and Bioinformatics market]]> This survey conducted by Oxford Gene Technology, provider of innovative genetics research and biomarker solutions to advance molecular medicine, has released the results from a recent survey of researchers using next generation sequencing. (Source:http://www.news-medical.net/news/20130821/Oxford-Gene-Technology-releases-next-generation-sequencing-survey-results.aspx )

 

Address of the bookmark: http://www.ogt.com/assets/0000/3190/NGS_Survey_2013_Infographic_Web.pdf

]]> Rahul Agarwal https://bioinformaticsonline.com/researchlabs/view/7816/boku-lab Wed, 08 Jan 2014 19:33:12 -0600 <![CDATA[BOKU Lab]]> We are interested in the study of complex systems in living organisms. Novel views augmenting the classical gene by gene approaches are required to overcome the engineered redundancies and combinatorial effects prevalent in higher eukaryotes. We therefore combine work to establish improved quantitative experimental assays, such as microarrays or differential in-gel electrophoresis, and development of modern computational methods, such as hierarchical probabilistic models or integration of heterogeneous data sources, focussed by biological studies in our laboratory and collaborations.

Highlights of our research include:

Optimization of microarray design, probe signal interpretation
Advanced models and tools for expression profiling
State-of-the-art applications and integrated analyses

Lab page @ http://bioinf.boku.ac.at/

]]> https://bioinformaticsonline.com/opportunity/view/6132/computational-methods-for-the-analysis-of-the-diversity-and-dynamics-of-genomes Sat, 09 Nov 2013 20:19:02 -0600 <![CDATA[Computational Methods for the Analysis of the Diversity and Dynamics of Genomes]]> The German-Canadian international research training group

"Computational Methods for the Analysis of the Diversity and Dynamics of Genomes"

has currently open positions for graduate students, to study at Simon Fraser University (Vancouver, Canada) and
Bielefeld University (Germany), starting in the fall 2014.

This international graduate program is a close cooperation of:

Bielefeld University, Germany: Graduate progam "DiDy"
Simon Fraser University (SFU), Vancouver, Canada: Graduate program "MADD-Gen"

The available positions include six PhD positions at Bielefeld University, as well as PhD and MSc positions at SFU.

Application deadline: December 31st, 2013
Webpage: http://wiki.techfak.uni-bielefeld.de/didy/Announcement

]]> https://bioinformaticsonline.com/opportunity/view/9676/bioinformatics-job-in-genotypic-tech-india Mon, 07 Apr 2014 08:20:54 -0500 <![CDATA[Bioinformatics job in Genotypic Tech, India]]> Genotypic Technology, the first Genomics Company of India is poised to become the next generation life sciences company. We are hiring professionals for our high end Genomics Labs (Molecular Biology/ Microarray/NGS) and Bioinformatics groups.

Apply to Genotypic Technology if you are a PhD in Life Sciences/ Molecular Biology/ Biotechnology/ Human Genetics/ Bioinformatics with minimum 4-5 years post doctoral experience as well as publications in peer reviewed journals.

Source: http://www.genotypic.co.in/Careers/2/Current-Openings.aspx

]]> https://bioinformaticsonline.com/opportunity/view/8442/assistant-professor-king-saud-university-riyadh Fri, 21 Feb 2014 05:57:18 -0600 <![CDATA[Assistant Professor @ King Saud University Riyadh]]> Qualifications: Candidates must have a Ph.D. and a strong background in Molecular and Cellular Biology, protein expression, FACS, or computational biology, and ability to work collaboratively.

This position will have a significant focus on providing analytical support for next generation sequencing data analysis – Exome-sequencing, Targetted sequencing as well as high-throughput genotyping on Illumina platform.

Job location:

Genome Research Chair
King Saud University, Riyadh-11451
KSA

Interested candidate may forward their CV to grcksu@gmail.com

]]> https://bioinformaticsonline.com/researchlabs/view/8970/j-aires-de-sousa-research-group Wed, 12 Mar 2014 09:57:25 -0500 <![CDATA[J. Aires de Sousa Research Group]]> We are involved in the development of methods and software in chemoinformatics. Current main projects are:

1.automatic learning of chemical reactivity and metabolism,
2.simulation of NMR spectra,
3.modelling of properties of ionic liquids, and
4.representation of molecular chirality.

More at http://joao.airesdesousa.com/

]]> https://bioinformaticsonline.com/researchlabs/view/9341/gerstein-lab Wed, 19 Mar 2014 12:48:20 -0500 <![CDATA[Gerstein Lab]]> The focus of the Gerstein Lab is interpreting personal genomes, particularly in relation to disorders, such as cancer. This endeavor has a number of related aspects described below. Moreover, the approaches we take have broad connections to a variety of data-intensive fields, within the emerging discipline of data science.

Personal Genome Variation: SVs
Human Genome Annotation: Processing Next-Gen Sequencing Data
Comparative Genomics: Pseudogenes as Molecular Fossils
Protein Structure and Function: Macromolecular Motions
Analysis of Diverse Networks
Genomics at the Forefront of Data Science

Lab page: http://www.gersteinlab.org/

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