Neel
Bioinformatics Beginner
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Understanding kmer !
By BioStar 1193 days agobioinfologics.github.io - What is a k-mer anyway? A k-mer is just a sequence of k characters in a string (or nucleotides in a DNA sequence). Now, it is important to remember that to get all k-mers from a sequence you need to get...JAMIA HAMDARD Bioinformatics Faculty Jobs 2014
JAMIA HAMDARD (Deemed University) Hamdard Nagar, New Delhi – 110 062 R E C R U I T M E N T (Advertisement No. 5/2014) Applications on prescribed form are invited for filling up the following teaching positions in the Department of...MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
By Neel 1088 days agogithub.com - MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw...Joao Pedro de Magalhaes Lab
Ageing has a profound impact on human society and modern medicine, yet it remains a major puzzle of biology. The goal of my work is to help understand the genetic, cellular, and molecular mechanisms of ageing. In the long term, I would like my work...maftools
By Surabhi Chaudhary 1072 days agogithub.com - With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each cancer type...Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59)
The Department of Biotechnology, group “Genome Bioinformatics” is currently seeking a Postgraduate Research Associate Bioinformatics / Computational Biology (Reference code: 59) Extent of employment: 30 Hours per Week Duration of employment: 1st...
Short-read assembly using Spades !
Last updated 1027 days ago by Abhimanyu Singh Comments (2)If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina...Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
By Neel 1002 days agogithub.com - This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA +...Orange-Bioinformatics 2.5.34
By Robert M Willioms 3701 days agopypi.python.org - Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter...
